RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 GALP22466 123 aa15.2■□□□□ 0.02
USP28-208ENST00000540438 ERP29P30040 261 aaKnown RBP15.2■□□□□ 0.02
USP28-208ENST00000540438 FOXF1Q12946 379 aa15.2■□□□□ 0.02
USP28-208ENST00000540438 PAPD4Q6PIY7 484 aaKnown RBP15.2■□□□□ 0.02
USP28-208ENST00000540438 OVCH1Q7RTY7 1134 aa15.2■□□□□ 0.02
USP28-208ENST00000540438 DCXRQ7Z4W1 244 aa15.2■□□□□ 0.02
USP28-208ENST00000540438 BPHLQ86WA6 291 aaPredicted RBP15.2■□□□□ 0.02
USP28-208ENST00000540438 HAVCR2Q8TDQ0 301 aa15.2■□□□□ 0.02
USP28-208ENST00000540438 FCAMRQ8WWV6 532 aa15.2■□□□□ 0.02
USP28-208ENST00000540438 NXPE2Q96DL1 559 aa15.2■□□□□ 0.02
USP28-208ENST00000540438 JSRP1Q96MG2 331 aaPredicted RBP15.2■□□□□ 0.02
USP28-208ENST00000540438 COMMD4Q9H0A8 199 aa15.2■□□□□ 0.02
USP28-208ENST00000540438 P2RY10O00398 339 aa15.19■□□□□ 0.02
USP28-208ENST00000540438 SCRG1O75711 98 aa15.19■□□□□ 0.02
USP28-208ENST00000540438 AHSA1O95433 338 aa15.19■□□□□ 0.02
USP28-208ENST00000540438 GLB1P16278 677 aa15.19■□□□□ 0.02
USP28-208ENST00000540438 PRKXP51817 358 aa15.19■□□□□ 0.02
USP28-208ENST00000540438 ART1P52961 327 aa15.19■□□□□ 0.02
USP28-208ENST00000540438 RPL27P61353 136 aaKnown RBP15.19■□□□□ 0.02
USP28-208ENST00000540438 MFAP5Q13361 173 aa15.19■□□□□ 0.02
USP28-208ENST00000540438 SMAD4Q13485 552 aaKnown RBP15.19■□□□□ 0.02
USP28-208ENST00000540438 RIN1Q13671 783 aa15.19■□□□□ 0.02
USP28-208ENST00000540438 CBFBQ13951 182 aa15.19■□□□□ 0.02
USP28-208ENST00000540438 EID2Q8N6I1 236 aa15.19■□□□□ 0.02
USP28-208ENST00000540438 OTOSQ8NHW6 89 aa15.19■□□□□ 0.02
USP28-208ENST00000540438 SLITRK2Q9H156 845 aa15.19■□□□□ 0.02
USP28-208ENST00000540438 ATG5Q9H1Y0 275 aa15.19■□□□□ 0.02
USP28-208ENST00000540438 ZFP64Q9NPA5 681 aa15.19■□□□□ 0.02
USP28-208ENST00000540438 OCIAD1Q9NX40 245 aa15.19■□□□□ 0.02
USP28-208ENST00000540438 M0QYG6 137 aa15.19■□□□□ 0.02
USP28-208ENST00000540438 GPR171O14626 319 aa15.19■□□□□ 0.02
USP28-208ENST00000540438 KRT33AO76009 404 aa15.19■□□□□ 0.02
USP28-208ENST00000540438 NKAIN1Q4KMZ8 207 aa15.19■□□□□ 0.02
USP28-208ENST00000540438 SLC35D3Q5M8T2 416 aa15.19■□□□□ 0.02
USP28-208ENST00000540438 FAM69AQ5T7M9 428 aa15.19■□□□□ 0.02
USP28-208ENST00000540438 UNQ9370/PRO34162Q6UXP9 181 aa15.19■□□□□ 0.02
USP28-208ENST00000540438 ZNF440Q8IYI8 595 aa15.19■□□□□ 0.02
USP28-208ENST00000540438 TCTE3Q8IZS6 198 aa15.19■□□□□ 0.02
USP28-208ENST00000540438 D2HGDHQ8N465 521 aa15.19■□□□□ 0.02
USP28-208ENST00000540438 APCDD1LQ8NCL9 501 aa15.19■□□□□ 0.02
USP28-208ENST00000540438 SCMH1Q96GD3 660 aa15.19■□□□□ 0.02
USP28-208ENST00000540438 OR1F2PQ96R84 312 aa15.19■□□□□ 0.02
USP28-208ENST00000540438 CMKLR1Q99788 373 aa15.19■□□□□ 0.02
USP28-208ENST00000540438 CHST6Q9GZX3 395 aa15.19■□□□□ 0.02
USP28-208ENST00000540438 EMC7Q9NPA0 242 aa15.19■□□□□ 0.02
USP28-208ENST00000540438 GVINP1Q7Z2Y8 2422 aa15.19■□□□□ 0.02
USP28-208ENST00000540438 CNOT1A5YKK6 2376 aaKnown RBP15.19■□□□□ 0.02
USP28-208ENST00000540438 ALG1L2C9J202 215 aa15.19■□□□□ 0.02
USP28-208ENST00000540438 TRIM3O75382 744 aaPredicted RBP15.19■□□□□ 0.02
USP28-208ENST00000540438 C2orf68Q2NKX9 166 aa15.19■□□□□ 0.02
USP28-208ENST00000540438 GLYATL3Q5SZD4 288 aa15.19■□□□□ 0.02
USP28-208ENST00000540438 C17orf107Q6ZR85 190 aa15.19■□□□□ 0.02
USP28-208ENST00000540438 LRRTM1Q86UE6 522 aa15.19■□□□□ 0.02
USP28-208ENST00000540438 C17orf82Q86X59 251 aaPredicted RBP15.19■□□□□ 0.02
USP28-208ENST00000540438 B3GNT4Q9C0J1 378 aa15.19■□□□□ 0.02
USP28-208ENST00000540438 NOX3Q9HBY0 568 aa15.19■□□□□ 0.02
USP28-208ENST00000540438 KLHL9Q9P2J3 617 aa15.19■□□□□ 0.02
USP28-208ENST00000540438 MRTO4Q9UKD2 239 aaKnown RBP15.19■□□□□ 0.02
USP28-208ENST00000540438 CDV3Q9UKY7 258 aaKnown RBP15.19■□□□□ 0.02
USP28-208ENST00000540438 FARSAQ9Y285 508 aaKnown RBP15.19■□□□□ 0.02
USP28-208ENST00000540438 LRP12Q9Y561 859 aa15.19■□□□□ 0.02
USP28-208ENST00000540438 COL4A2P08572 1712 aa15.18■□□□□ 0.02
USP28-208ENST00000540438 EFNA2O43921 213 aa15.18■□□□□ 0.02
USP28-208ENST00000540438 SHBQ15464 509 aa15.18■□□□□ 0.02
USP28-208ENST00000540438 C2orf76Q3KRA6 126 aa15.18■□□□□ 0.02
USP28-208ENST00000540438 OGFOD3Q6PK18 319 aa15.18■□□□□ 0.02
USP28-208ENST00000540438 COMMD2Q86X83 199 aa15.18■□□□□ 0.02
USP28-208ENST00000540438 C9orf62Q8N4C0 152 aa15.18■□□□□ 0.02
USP28-208ENST00000540438 FBXL2Q9UKC9 423 aa15.18■□□□□ 0.02
USP28-208ENST00000540438 IGHV3-15A0A0B4J1V0 119 aa15.18■□□□□ 0.02
USP28-208ENST00000540438 SLC22A23A1A5C7 686 aa15.18■□□□□ 0.02
USP28-208ENST00000540438 SIGLEC6O43699 453 aa15.18■□□□□ 0.02
USP28-208ENST00000540438 NUDT21O43809 227 aaKnown RBP15.18■□□□□ 0.02
USP28-208ENST00000540438 S100A1P23297 94 aa15.18■□□□□ 0.02
USP28-208ENST00000540438 GNALP38405 381 aa15.18■□□□□ 0.02
USP28-208ENST00000540438 AP2S1P53680 142 aaPredicted RBP15.18■□□□□ 0.02
USP28-208ENST00000540438 PITPNAQ00169 270 aa15.18■□□□□ 0.02
USP28-208ENST00000540438 NKPD1Q17RQ9 610 aa15.18■□□□□ 0.02
USP28-208ENST00000540438 GPR148Q8TDV2 347 aa15.18■□□□□ 0.02
USP28-208ENST00000540438 C4orf45Q96LM5 186 aa15.18■□□□□ 0.02
USP28-208ENST00000540438 SLC19A3Q9BZV2 496 aa15.18■□□□□ 0.02
USP28-208ENST00000540438 CIB4A0PJX0 185 aa15.17■□□□□ 0.02
USP28-208ENST00000540438 POM121CA8CG34 1229 aa15.17■□□□□ 0.02
USP28-208ENST00000540438 PLPP3O14495 311 aa15.17■□□□□ 0.02
USP28-208ENST00000540438 ENPP1P22413 925 aa15.17■□□□□ 0.02
USP28-208ENST00000540438 CXCL12P48061 93 aa15.17■□□□□ 0.02
USP28-208ENST00000540438 TLE3Q04726 772 aa15.17■□□□□ 0.02
USP28-208ENST00000540438 MOGAT2Q3SYC2 334 aa15.17■□□□□ 0.02
USP28-208ENST00000540438 SLC22A6Q4U2R8 563 aa15.17■□□□□ 0.02
USP28-208ENST00000540438 TMED4Q7Z7H5 227 aa15.17■□□□□ 0.02
USP28-208ENST00000540438 ACBD4Q8NC06 268 aa15.17■□□□□ 0.02
USP28-208ENST00000540438 GPX7Q96SL4 187 aaPredicted RBP15.17■□□□□ 0.02
USP28-208ENST00000540438 MMACHCQ9Y4U1 282 aa15.17■□□□□ 0.02
USP28-208ENST00000540438 ZNF814B7Z6K7 855 aa15.17■□□□□ 0.02
USP28-208ENST00000540438 PYCARD-AS1I3L0S3 204 aa15.17■□□□□ 0.02
USP28-208ENST00000540438 GPRIN2O60269 458 aa15.17■□□□□ 0.02
USP28-208ENST00000540438 FADS1O60427 444 aa15.17■□□□□ 0.02
USP28-208ENST00000540438 SCO1O75880 301 aa15.17■□□□□ 0.02
USP28-208ENST00000540438 CFDP00746 253 aaPredicted RBP15.17■□□□□ 0.02
USP28-208ENST00000540438 DNASE1P24855 282 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms