RNA–Protein interactions for RNA: ENST00000540230.5

UBE3B-212, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 1 (best) BASIC

Gene UBE3B, Length 1,541 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-212ENST00000540230 MAPK1IP1LQ8NDC0 245 aa13.01□□□□□ -0.33
UBE3B-212ENST00000540230 SLC7A6OSQ96CW6 309 aaPredicted RBP13.01□□□□□ -0.33
UBE3B-212ENST00000540230 GPX7Q96SL4 187 aaPredicted RBP13.01□□□□□ -0.33
UBE3B-212ENST00000540230 THTPAQ9BU02 230 aa13.01□□□□□ -0.33
UBE3B-212ENST00000540230 BDH2Q9BUT1 245 aa13.01□□□□□ -0.33
UBE3B-212ENST00000540230 DENND2DQ9H6A0 471 aaPredicted RBP13.01□□□□□ -0.33
UBE3B-212ENST00000540230 ZNF442Q9H7R0 627 aa13.01□□□□□ -0.33
UBE3B-212ENST00000540230 RNF121Q9H920 327 aa13.01□□□□□ -0.33
UBE3B-212ENST00000540230 NRIP3Q9NQ35 241 aa13.01□□□□□ -0.33
UBE3B-212ENST00000540230 VNN3Q9NY84 501 aa13.01□□□□□ -0.33
UBE3B-212ENST00000540230 GRHPRQ9UBQ7 328 aa13.01□□□□□ -0.33
UBE3B-212ENST00000540230 LYVE1Q9Y5Y7 322 aa13.01□□□□□ -0.33
UBE3B-212ENST00000540230 TMEM129A0AVI4 362 aa13□□□□□ -0.33
UBE3B-212ENST00000540230 SLC22A23A1A5C7 686 aa13□□□□□ -0.33
UBE3B-212ENST00000540230 A6NIZ1 184 aa13□□□□□ -0.33
UBE3B-212ENST00000540230 ACOT8O14734 319 aa13□□□□□ -0.33
UBE3B-212ENST00000540230 MGRN1O60291 552 aa13□□□□□ -0.33
UBE3B-212ENST00000540230 OR10H3O60404 316 aa13□□□□□ -0.33
UBE3B-212ENST00000540230 ZNF32P17041 273 aa13□□□□□ -0.33
UBE3B-212ENST00000540230 NR4A1P22736 598 aa13□□□□□ -0.33
UBE3B-212ENST00000540230 SMIM11AP58511 58 aa13□□□□□ -0.33
UBE3B-212ENST00000540230 RAP1BP61224 184 aa13□□□□□ -0.33
UBE3B-212ENST00000540230 RAP1AP62834 184 aa13□□□□□ -0.33
UBE3B-212ENST00000540230 DBPQ10586 325 aaPredicted RBP13□□□□□ -0.33
UBE3B-212ENST00000540230 KRR1Q13601 381 aaKnown RBP13□□□□□ -0.33
UBE3B-212ENST00000540230 SGCAQ16586 387 aa13□□□□□ -0.33
UBE3B-212ENST00000540230 SLC36A2Q495M3 483 aa13□□□□□ -0.33
UBE3B-212ENST00000540230 MTX3Q5HYI7 312 aa13□□□□□ -0.33
UBE3B-212ENST00000540230 OTPQ5XKR4 325 aa13□□□□□ -0.33
UBE3B-212ENST00000540230 FOXL2NBQ6ZUU3 175 aa13□□□□□ -0.33
UBE3B-212ENST00000540230 PTCHD4Q6ZW05 846 aa13□□□□□ -0.33
UBE3B-212ENST00000540230 IL17RDQ8NFM7 739 aa13□□□□□ -0.33
UBE3B-212ENST00000540230 OR9Q2Q8NGE9 314 aa13□□□□□ -0.33
UBE3B-212ENST00000540230 ASB9Q96DX5 294 aa13□□□□□ -0.33
UBE3B-212ENST00000540230 FOXN4Q96NZ1 517 aa13□□□□□ -0.33
UBE3B-212ENST00000540230 SORCS2Q96PQ0 1159 aa13□□□□□ -0.33
UBE3B-212ENST00000540230 RBP7Q96R05 134 aa13□□□□□ -0.33
UBE3B-212ENST00000540230 MUC13Q9H3R2 512 aa13□□□□□ -0.33
UBE3B-212ENST00000540230 SIAEQ9HAT2 523 aa13□□□□□ -0.33
UBE3B-212ENST00000540230 IER3IP1Q9Y5U9 82 aa13□□□□□ -0.33
UBE3B-212ENST00000540230 A0A1W2PPL8 197 aa12.99□□□□□ -0.33
UBE3B-212ENST00000540230 SOCS2O14508 198 aa12.99□□□□□ -0.33
UBE3B-212ENST00000540230 PPP1R3DO95685 299 aa12.99□□□□□ -0.33
UBE3B-212ENST00000540230 IGFBP1P08833 259 aaPredicted RBP12.99□□□□□ -0.33
UBE3B-212ENST00000540230 CTLA4P16410 223 aa12.99□□□□□ -0.33
UBE3B-212ENST00000540230 LAP3P28838 519 aa12.99□□□□□ -0.33
UBE3B-212ENST00000540230 SDHAP31040 664 aa12.99□□□□□ -0.33
UBE3B-212ENST00000540230 NUDT6P53370 316 aa12.99□□□□□ -0.33
UBE3B-212ENST00000540230 CHRNB3Q05901 458 aa12.99□□□□□ -0.33
UBE3B-212ENST00000540230 RAB35Q15286 201 aa12.99□□□□□ -0.33
UBE3B-212ENST00000540230 EFNB3Q15768 340 aa12.99□□□□□ -0.33
UBE3B-212ENST00000540230 PGBD2Q6P3X8 592 aa12.99□□□□□ -0.33
UBE3B-212ENST00000540230 SMARCD3Q6STE5 483 aa12.99□□□□□ -0.33
UBE3B-212ENST00000540230 SVOPLQ8N434 492 aa12.99□□□□□ -0.33
UBE3B-212ENST00000540230 ZNF525Q8N782 197 aa12.99□□□□□ -0.33
UBE3B-212ENST00000540230 CPEB3Q8NE35 698 aaKnown RBP12.99□□□□□ -0.33
UBE3B-212ENST00000540230 SLC30A7Q8NEW0 376 aa12.99□□□□□ -0.33
UBE3B-212ENST00000540230 OR4C15Q8NGM1 316 aa12.99□□□□□ -0.33
UBE3B-212ENST00000540230 FANK1Q8TC84 345 aa12.99□□□□□ -0.33
UBE3B-212ENST00000540230 BTBD10Q9BSF8 475 aa12.99□□□□□ -0.33
UBE3B-212ENST00000540230 OR52D1Q9H346 318 aa12.99□□□□□ -0.33
UBE3B-212ENST00000540230 PLK3Q9H4B4 646 aa12.99□□□□□ -0.33
UBE3B-212ENST00000540230 KRCC1Q9NPI7 259 aaPredicted RBP12.99□□□□□ -0.33
UBE3B-212ENST00000540230 SETD2Q9BYW2 2564 aaPredicted RBP12.99□□□□□ -0.33
UBE3B-212ENST00000540230 CSPG4Q6UVK1 2322 aa12.99□□□□□ -0.33
UBE3B-212ENST00000540230 CHD3Q12873 2000 aaKnown RBP12.99□□□□□ -0.33
UBE3B-212ENST00000540230 IGHV4-30-2A0A087WSY4 118 aa12.98□□□□□ -0.33
UBE3B-212ENST00000540230 PRSS37A4D1T9 235 aa12.98□□□□□ -0.33
UBE3B-212ENST00000540230 B9A039 149 aa12.98□□□□□ -0.33
UBE3B-212ENST00000540230 RNF223E7ERA6 249 aa12.98□□□□□ -0.33
UBE3B-212ENST00000540230 ENTPD5O75356 428 aa12.98□□□□□ -0.33
UBE3B-212ENST00000540230 NR2C1P13056 603 aa12.98□□□□□ -0.33
UBE3B-212ENST00000540230 NPR2P20594 1047 aa12.98□□□□□ -0.33
UBE3B-212ENST00000540230 FPR3P25089 353 aa12.98□□□□□ -0.33
UBE3B-212ENST00000540230 APEX1P27695 318 aaKnown RBP12.98□□□□□ -0.33
UBE3B-212ENST00000540230 GSSP48637 474 aa12.98□□□□□ -0.33
UBE3B-212ENST00000540230 HMGA2P52926 109 aa12.98□□□□□ -0.33
UBE3B-212ENST00000540230 SNRPD2P62316 118 aaKnown RBP12.98□□□□□ -0.33
UBE3B-212ENST00000540230 ENDOGQ14249 297 aaKnown RBP12.98□□□□□ -0.33
UBE3B-212ENST00000540230 PABPC1L2AQ5JQF8 200 aa12.98□□□□□ -0.33
UBE3B-212ENST00000540230 FAM27BQ5VT28 67 aa12.98□□□□□ -0.33
UBE3B-212ENST00000540230 C1orf94Q6P1W5 598 aa12.98□□□□□ -0.33
UBE3B-212ENST00000540230 TMEM53Q6P2H8 277 aa12.98□□□□□ -0.33
UBE3B-212ENST00000540230 UGT2A3Q6UWM9 527 aa12.98□□□□□ -0.33
UBE3B-212ENST00000540230 BIVMQ86UB2 503 aa12.98□□□□□ -0.33
UBE3B-212ENST00000540230 LRP11Q86VZ4 500 aa12.98□□□□□ -0.33
UBE3B-212ENST00000540230 ZCCHC24Q8N2G6 241 aaKnown RBP12.98□□□□□ -0.33
UBE3B-212ENST00000540230 AKR7LQ8NHP1 331 aa12.98□□□□□ -0.33
UBE3B-212ENST00000540230 FNDC8Q8TC99 324 aa12.98□□□□□ -0.33
UBE3B-212ENST00000540230 DOK1Q99704 481 aa12.98□□□□□ -0.33
UBE3B-212ENST00000540230 MRPL37Q9BZE1 423 aaKnown RBP12.98□□□□□ -0.33
UBE3B-212ENST00000540230 SYT4Q9H2B2 425 aa12.98□□□□□ -0.33
UBE3B-212ENST00000540230 OR51B6Q9H340 312 aa12.98□□□□□ -0.33
UBE3B-212ENST00000540230 MAGIXQ9H6Y5 334 aa12.98□□□□□ -0.33
UBE3B-212ENST00000540230 BARX1Q9HBU1 254 aaPredicted RBP12.98□□□□□ -0.33
UBE3B-212ENST00000540230 TMCC3Q9ULS5 477 aa12.98□□□□□ -0.33
UBE3B-212ENST00000540230 FZR1Q9UM11 496 aa12.98□□□□□ -0.33
UBE3B-212ENST00000540230 PMF1-BGLAPU3KQ54 211 aa12.98□□□□□ -0.33
UBE3B-212ENST00000540230 NF1P21359 2839 aa12.98□□□□□ -0.33
UBE3B-212ENST00000540230 C2CD3Q4AC94 2353 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms