RNA–Protein interactions for RNA: ENST00000539417.6

RPAIN-206, Transcript of RPA interacting protein, humanhuman

TSL 2

Gene RPAIN, Length 1,471 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-206ENST00000539417 VSX1Q9NZR4 365 aaPredicted RBP13.68□□□□□ -0.22
RPAIN-206ENST00000539417 STX18Q9P2W9 335 aaKnown RBP13.68□□□□□ -0.22
RPAIN-206ENST00000539417 AP4S1Q9Y587 144 aa13.68□□□□□ -0.22
RPAIN-206ENST00000539417 A0A1W2PPL8 197 aa13.67□□□□□ -0.22
RPAIN-206ENST00000539417 XKRYO14609 159 aa13.67□□□□□ -0.22
RPAIN-206ENST00000539417 ARPC3O15145 178 aa13.67□□□□□ -0.22
RPAIN-206ENST00000539417 SLC16A7O60669 478 aa13.67□□□□□ -0.22
RPAIN-206ENST00000539417 E2F6O75461 281 aa13.67□□□□□ -0.22
RPAIN-206ENST00000539417 SOD3P08294 240 aa13.67□□□□□ -0.22
RPAIN-206ENST00000539417 MMP7P09237 267 aaPredicted RBP13.67□□□□□ -0.22
RPAIN-206ENST00000539417 APEHP13798 732 aaKnown RBP13.67□□□□□ -0.22
RPAIN-206ENST00000539417 ZNF14P17017 642 aaPredicted RBP13.67□□□□□ -0.22
RPAIN-206ENST00000539417 PTDSS1P48651 473 aaKnown RBP13.67□□□□□ -0.22
RPAIN-206ENST00000539417 CDH11P55287 796 aa13.67□□□□□ -0.22
RPAIN-206ENST00000539417 ACTR3P61158 418 aa13.67□□□□□ -0.22
RPAIN-206ENST00000539417 RAB1AP62820 205 aa13.67□□□□□ -0.22
RPAIN-206ENST00000539417 MRPS34P82930 218 aaKnown RBP13.67□□□□□ -0.22
RPAIN-206ENST00000539417 NAAAQ02083 359 aa13.67□□□□□ -0.22
RPAIN-206ENST00000539417 RAB39AQ14964 217 aa13.67□□□□□ -0.22
RPAIN-206ENST00000539417 ATP6AP1Q15904 470 aa13.67□□□□□ -0.22
RPAIN-206ENST00000539417 GSG1Q2KHT4 349 aa13.67□□□□□ -0.22
RPAIN-206ENST00000539417 PGGHGQ32M88 737 aa13.67□□□□□ -0.22
RPAIN-206ENST00000539417 LEG1Q6P5S2 330 aa13.67□□□□□ -0.22
RPAIN-206ENST00000539417 SLC22A25Q6T423 547 aa13.67□□□□□ -0.22
RPAIN-206ENST00000539417 SSX8Q7RTT4 187 aa13.67□□□□□ -0.22
RPAIN-206ENST00000539417 SDR9C7Q8NEX9 313 aa13.67□□□□□ -0.22
RPAIN-206ENST00000539417 FBXO17Q96EF6 278 aa13.67□□□□□ -0.22
RPAIN-206ENST00000539417 TSSK6Q9BXA6 273 aa13.67□□□□□ -0.22
RPAIN-206ENST00000539417 RERGLQ9H628 205 aa13.67□□□□□ -0.22
RPAIN-206ENST00000539417 YY1AP1Q9H869 796 aa13.67□□□□□ -0.22
RPAIN-206ENST00000539417 EMC7Q9NPA0 242 aa13.67□□□□□ -0.22
RPAIN-206ENST00000539417 CELSR1Q9NYQ6 3014 aa13.67□□□□□ -0.22
RPAIN-206ENST00000539417 HEATR1Q9H583 2144 aaKnown RBP13.67□□□□□ -0.22
RPAIN-206ENST00000539417 OR6C68A6NDL8 312 aa13.67□□□□□ -0.22
RPAIN-206ENST00000539417 H3BNX3 289 aa13.67□□□□□ -0.22
RPAIN-206ENST00000539417 MGRN1O60291 552 aa13.67□□□□□ -0.22
RPAIN-206ENST00000539417 RAF1P04049 648 aa13.67□□□□□ -0.22
RPAIN-206ENST00000539417 LAP3P28838 519 aa13.67□□□□□ -0.22
RPAIN-206ENST00000539417 MAP1AP78559 2803 aaPredicted RBP13.67□□□□□ -0.22
RPAIN-206ENST00000539417 HGFACQ04756 655 aa13.67□□□□□ -0.22
RPAIN-206ENST00000539417 SHQ1Q6PI26 577 aaKnown RBP13.67□□□□□ -0.22
RPAIN-206ENST00000539417 CD300LDQ6UXZ3 194 aa13.67□□□□□ -0.22
RPAIN-206ENST00000539417 SLC16A14Q7RTX9 510 aa13.67□□□□□ -0.22
RPAIN-206ENST00000539417 IQCF1Q8N6M8 205 aa13.67□□□□□ -0.22
RPAIN-206ENST00000539417 OR52E2Q8NGJ4 325 aa13.67□□□□□ -0.22
RPAIN-206ENST00000539417 ZNRF4Q8WWF5 429 aa13.67□□□□□ -0.22
RPAIN-206ENST00000539417 RADILQ96JH8 1075 aa13.67□□□□□ -0.22
RPAIN-206ENST00000539417 DDOQ99489 341 aa13.67□□□□□ -0.22
RPAIN-206ENST00000539417 NDEL1Q9GZM8 345 aa13.67□□□□□ -0.22
RPAIN-206ENST00000539417 SEMA6AQ9H2E6 1030 aa13.67□□□□□ -0.22
RPAIN-206ENST00000539417 SIAEQ9HAT2 523 aa13.67□□□□□ -0.22
RPAIN-206ENST00000539417 TBC1D23Q9NUY8 699 aa13.67□□□□□ -0.22
RPAIN-206ENST00000539417 CISD1Q9NZ45 108 aaKnown RBP13.67□□□□□ -0.22
RPAIN-206ENST00000539417 COA3Q9Y2R0 106 aaPredicted RBP13.67□□□□□ -0.22
RPAIN-206ENST00000539417 DSCAMO60469 2012 aa13.66□□□□□ -0.22
RPAIN-206ENST00000539417 ARRDC5A6NEK1 342 aa13.66□□□□□ -0.22
RPAIN-206ENST00000539417 FAM171A2A8MVW0 826 aa13.66□□□□□ -0.22
RPAIN-206ENST00000539417 DEAF1O75398 565 aaPredicted RBP13.66□□□□□ -0.22
RPAIN-206ENST00000539417 CD8AP01732 235 aa13.66□□□□□ -0.22
RPAIN-206ENST00000539417 DANCRP0C864 163 aa13.66□□□□□ -0.22
RPAIN-206ENST00000539417 HOXB6P17509 224 aaKnown RBP13.66□□□□□ -0.22
RPAIN-206ENST00000539417 ARR3P36575 388 aa13.66□□□□□ -0.22
RPAIN-206ENST00000539417 DAPP51397 102 aa13.66□□□□□ -0.22
RPAIN-206ENST00000539417 KHDRBS1Q07666 443 aaKnown RBP eCLIP13.66□□□□□ -0.22
RPAIN-206ENST00000539417 KEAP1Q14145 624 aa13.66□□□□□ -0.22
RPAIN-206ENST00000539417 ENDOGQ14249 297 aaKnown RBP13.66□□□□□ -0.22
RPAIN-206ENST00000539417 GK3PQ14409 553 aa13.66□□□□□ -0.22
RPAIN-206ENST00000539417 SLC36A3Q495N2 470 aa13.66□□□□□ -0.22
RPAIN-206ENST00000539417 CCDC36Q8IYA8 594 aa13.66□□□□□ -0.22
RPAIN-206ENST00000539417 OR6V1Q8N148 313 aa13.66□□□□□ -0.22
RPAIN-206ENST00000539417 PAQR4Q8N4S7 273 aaPredicted RBP13.66□□□□□ -0.22
RPAIN-206ENST00000539417 ZNF611Q8N823 705 aa13.66□□□□□ -0.22
RPAIN-206ENST00000539417 FAM169BQ8N8A8 192 aa13.66□□□□□ -0.22
RPAIN-206ENST00000539417 CYB561A3Q8NBI2 242 aa13.66□□□□□ -0.22
RPAIN-206ENST00000539417 NPEPL1Q8NDH3 523 aa13.66□□□□□ -0.22
RPAIN-206ENST00000539417 SRA1Q9HD15 236 aaKnown RBP13.66□□□□□ -0.22
RPAIN-206ENST00000539417 POLE4Q9NR33 117 aa13.66□□□□□ -0.22
RPAIN-206ENST00000539417 ATP23Q9Y6H3 246 aa13.66□□□□□ -0.22
RPAIN-206ENST00000539417 CCDC168Q8NDH2 2452 aa13.66□□□□□ -0.22
RPAIN-206ENST00000539417 IGLV1-36A0A0B4J1U3 117 aa13.65□□□□□ -0.22
RPAIN-206ENST00000539417 IGHV2OR16-5A0A0B4J2B6 119 aa13.65□□□□□ -0.22
RPAIN-206ENST00000539417 ANKRD65E5RJM6 399 aa13.65□□□□□ -0.22
RPAIN-206ENST00000539417 UBL3O95164 117 aa13.65□□□□□ -0.22
RPAIN-206ENST00000539417 CCL2P13500 99 aa13.65□□□□□ -0.22
RPAIN-206ENST00000539417 ZNF32P17041 273 aa13.65□□□□□ -0.22
RPAIN-206ENST00000539417 GSTM3P21266 225 aa13.65□□□□□ -0.22
RPAIN-206ENST00000539417 C3orf36Q3SXR2 165 aa13.65□□□□□ -0.22
RPAIN-206ENST00000539417 NRN1LQ496H8 165 aa13.65□□□□□ -0.22
RPAIN-206ENST00000539417 C1QTNF12Q5T7M4 302 aa13.65□□□□□ -0.22
RPAIN-206ENST00000539417 ADCK1Q86TW2 530 aa13.65□□□□□ -0.22
RPAIN-206ENST00000539417 CPEB3Q8NE35 698 aaKnown RBP13.65□□□□□ -0.22
RPAIN-206ENST00000539417 FNDC8Q8TC99 324 aa13.65□□□□□ -0.22
RPAIN-206ENST00000539417 SMAP2Q8WU79 429 aaPredicted RBP13.65□□□□□ -0.22
RPAIN-206ENST00000539417 FBXW5Q969U6 566 aa13.65□□□□□ -0.22
RPAIN-206ENST00000539417 ZNF416Q9BWM5 594 aa13.65□□□□□ -0.22
RPAIN-206ENST00000539417 RPRD1BQ9NQG5 326 aaKnown RBP13.65□□□□□ -0.22
RPAIN-206ENST00000539417 B9D1Q9UPM9 204 aa13.65□□□□□ -0.22
RPAIN-206ENST00000539417 LAMP3Q9UQV4 416 aa13.65□□□□□ -0.22
RPAIN-206ENST00000539417 MYO9AB2RTY4 2548 aa13.65□□□□□ -0.22
RPAIN-206ENST00000539417 AHCYL1O43865 530 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms