RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 EBF4Q9BQW3 602 aa11.52□□□□□ -0.57
SS18-204ENST00000539244 MEPEQ9NQ76 525 aaPredicted RBP11.52□□□□□ -0.57
SS18-204ENST00000539244 NIPSNAP3AQ9UFN0 247 aaPredicted RBP11.52□□□□□ -0.57
SS18-204ENST00000539244 SLC7A7Q9UM01 511 aa11.52□□□□□ -0.57
SS18-204ENST00000539244 M0QX08 132 aa11.51□□□□□ -0.57
SS18-204ENST00000539244 KCNAB3O43448 404 aa11.51□□□□□ -0.57
SS18-204ENST00000539244 UBOX5O94941 541 aa11.51□□□□□ -0.57
SS18-204ENST00000539244 PRSS23O95084 383 aa11.51□□□□□ -0.57
SS18-204ENST00000539244 IGF2P01344 180 aa11.51□□□□□ -0.57
SS18-204ENST00000539244 OPN1SWP03999 348 aa11.51□□□□□ -0.57
SS18-204ENST00000539244 HIST1H2ABP04908 130 aa11.51□□□□□ -0.57
SS18-204ENST00000539244 MAKP20794 623 aa11.51□□□□□ -0.57
SS18-204ENST00000539244 CD247P20963 164 aa11.51□□□□□ -0.57
SS18-204ENST00000539244 DRD4P21917 467 aa11.51□□□□□ -0.57
SS18-204ENST00000539244 FPR2P25090 351 aa11.51□□□□□ -0.57
SS18-204ENST00000539244 ZNF81P51508 661 aa11.51□□□□□ -0.57
SS18-204ENST00000539244 UGT2B15P54855 530 aa11.51□□□□□ -0.57
SS18-204ENST00000539244 MRPS34P82930 218 aaKnown RBP11.51□□□□□ -0.57
SS18-204ENST00000539244 GLO1Q04760 184 aa11.51□□□□□ -0.57
SS18-204ENST00000539244 TSTQ16762 297 aaKnown RBP11.51□□□□□ -0.57
SS18-204ENST00000539244 TMEM255AQ5JRV8 349 aa11.51□□□□□ -0.57
SS18-204ENST00000539244 MBNL2Q5VZF2 373 aaKnown RBP11.51□□□□□ -0.57
SS18-204ENST00000539244 HIST3H2AQ7L7L0 130 aa11.51□□□□□ -0.57
SS18-204ENST00000539244 NANOGNBQ7Z5D8 188 aa11.51□□□□□ -0.57
SS18-204ENST00000539244 RBM45Q8IUH3 476 aaKnown RBP11.51□□□□□ -0.57
SS18-204ENST00000539244 C1orf174Q8IYL3 243 aa11.51□□□□□ -0.57
SS18-204ENST00000539244 ZNF101Q8IZC7 436 aa11.51□□□□□ -0.57
SS18-204ENST00000539244 ICA1LQ8NDH6 482 aa11.51□□□□□ -0.57
SS18-204ENST00000539244 ASB10Q8WXI3 467 aa11.51□□□□□ -0.57
SS18-204ENST00000539244 HIST1H2ACQ93077 130 aa11.51□□□□□ -0.57
SS18-204ENST00000539244 NMD3Q96D46 503 aaKnown RBP11.51□□□□□ -0.57
SS18-204ENST00000539244 MARS2Q96GW9 593 aaKnown RBP11.51□□□□□ -0.57
SS18-204ENST00000539244 POM121L2Q96KW2 1035 aa11.51□□□□□ -0.57
SS18-204ENST00000539244 GAL3ST1Q99999 423 aa11.51□□□□□ -0.57
SS18-204ENST00000539244 PRSS27Q9BQR3 290 aa11.51□□□□□ -0.57
SS18-204ENST00000539244 ZNF747Q9BV97 191 aa11.51□□□□□ -0.57
SS18-204ENST00000539244 C7orf69Q9H7B7 122 aa11.51□□□□□ -0.57
SS18-204ENST00000539244 ZNF696Q9H7X3 374 aa11.51□□□□□ -0.57
SS18-204ENST00000539244 SIAEQ9HAT2 523 aa11.51□□□□□ -0.57
SS18-204ENST00000539244 SMURF2Q9HAU4 748 aa11.51□□□□□ -0.57
SS18-204ENST00000539244 CGGBP1Q9UFW8 167 aaPredicted RBP11.51□□□□□ -0.57
SS18-204ENST00000539244 A0A1W2PRG6 482 aa11.5□□□□□ -0.57
SS18-204ENST00000539244 H3BSA7 217 aa11.5□□□□□ -0.57
SS18-204ENST00000539244 KPNA4O00629 521 aaPredicted RBP11.5□□□□□ -0.57
SS18-204ENST00000539244 TMPRSS2O15393 492 aa11.5□□□□□ -0.57
SS18-204ENST00000539244 TPD52L2O43399 206 aaKnown RBP11.5□□□□□ -0.57
SS18-204ENST00000539244 ICMTO60725 284 aa11.5□□□□□ -0.57
SS18-204ENST00000539244 TRMUO75648 421 aaKnown RBP11.5□□□□□ -0.57
SS18-204ENST00000539244 TSPAN19P0C672 248 aa11.5□□□□□ -0.57
SS18-204ENST00000539244 HKR1P10072 659 aa11.5□□□□□ -0.57
SS18-204ENST00000539244 UMPSP11172 480 aa11.5□□□□□ -0.57
SS18-204ENST00000539244 ACADSP16219 412 aa11.5□□□□□ -0.57
SS18-204ENST00000539244 STOMP27105 288 aa11.5□□□□□ -0.57
SS18-204ENST00000539244 LIPAP38571 399 aa11.5□□□□□ -0.57
SS18-204ENST00000539244 WNT5AP41221 380 aa11.5□□□□□ -0.57
SS18-204ENST00000539244 DAP3P51398 398 aaKnown RBP11.5□□□□□ -0.57
SS18-204ENST00000539244 HSF2Q03933 536 aa11.5□□□□□ -0.57
SS18-204ENST00000539244 RPL18Q07020 188 aaKnown RBP11.5□□□□□ -0.57
SS18-204ENST00000539244 SLC3A1Q07837 685 aa11.5□□□□□ -0.57
SS18-204ENST00000539244 FOXL1Q12952 345 aa11.5□□□□□ -0.57
SS18-204ENST00000539244 ZNF718Q3SXZ3 478 aa11.5□□□□□ -0.57
SS18-204ENST00000539244 AGKQ53H12 422 aa11.5□□□□□ -0.57
SS18-204ENST00000539244 PABPC1L2AQ5JQF8 200 aa11.5□□□□□ -0.57
SS18-204ENST00000539244 UNQ6126/PRO20091Q6UXV3 157 aa11.5□□□□□ -0.57
SS18-204ENST00000539244 PATL1Q86TB9 770 aaKnown RBP11.5□□□□□ -0.57
SS18-204ENST00000539244 SLC30A8Q8IWU4 369 aa11.5□□□□□ -0.57
SS18-204ENST00000539244 LRRC18Q8N456 261 aa11.5□□□□□ -0.57
SS18-204ENST00000539244 DPP10Q8N608 796 aa11.5□□□□□ -0.57
SS18-204ENST00000539244 IPCEF1Q8WWN9 437 aaPredicted RBP11.5□□□□□ -0.57
SS18-204ENST00000539244 CCL17Q92583 94 aa11.5□□□□□ -0.57
SS18-204ENST00000539244 NABP1Q96AH0 204 aa11.5□□□□□ -0.57
SS18-204ENST00000539244 KCNN2Q9H2S1 579 aa11.5□□□□□ -0.57
SS18-204ENST00000539244 CYSLTR2Q9NS75 346 aa11.5□□□□□ -0.57
SS18-204ENST00000539244 DDX28Q9NUL7 540 aaKnown RBP11.5□□□□□ -0.57
SS18-204ENST00000539244 STX18Q9P2W9 335 aaKnown RBP11.5□□□□□ -0.57
SS18-204ENST00000539244 KLHL21Q9UJP4 597 aa11.5□□□□□ -0.57
SS18-204ENST00000539244 POLR3KQ9Y2Y1 108 aaPredicted RBP11.5□□□□□ -0.57
SS18-204ENST00000539244 UGT2A1Q9Y4X1 527 aa11.5□□□□□ -0.57
SS18-204ENST00000539244 PKD1L1Q8TDX9 2849 aa11.49□□□□□ -0.57
SS18-204ENST00000539244 LOC100509620A0A075B734 347 aa11.49□□□□□ -0.57
SS18-204ENST00000539244 PLSCR5A0PG75 271 aa11.49□□□□□ -0.57
SS18-204ENST00000539244 ZSCAN5BA6NJL1 495 aa11.49□□□□□ -0.57
SS18-204ENST00000539244 NPIPB13A6NJU9 1138 aa11.49□□□□□ -0.57
SS18-204ENST00000539244 NPIPB4C9JG80 1138 aa11.49□□□□□ -0.57
SS18-204ENST00000539244 MCIDASD6RGH6 385 aa11.49□□□□□ -0.57
SS18-204ENST00000539244 BLOC1S5-TXNDC5H3BN57 136 aa11.49□□□□□ -0.57
SS18-204ENST00000539244 FOXH1O75593 365 aa11.49□□□□□ -0.57
SS18-204ENST00000539244 MT-ND1P03886 318 aa11.49□□□□□ -0.57
SS18-204ENST00000539244 F13BP05160 661 aa11.49□□□□□ -0.57
SS18-204ENST00000539244 CD55P08174 381 aa11.49□□□□□ -0.57
SS18-204ENST00000539244 VIMP08670 466 aaKnown RBP11.49□□□□□ -0.57
SS18-204ENST00000539244 ZNF32P17041 273 aa11.49□□□□□ -0.57
SS18-204ENST00000539244 GCH1P30793 250 aa11.49□□□□□ -0.57
SS18-204ENST00000539244 PCGF2P35227 344 aa11.49□□□□□ -0.57
SS18-204ENST00000539244 MPV17P39210 176 aa11.49□□□□□ -0.57
SS18-204ENST00000539244 SELPLGQ14242 412 aa11.49□□□□□ -0.57
SS18-204ENST00000539244 CYP51A1Q16850 503 aa11.49□□□□□ -0.57
SS18-204ENST00000539244 THEM4Q5T1C6 240 aa11.49□□□□□ -0.57
SS18-204ENST00000539244 ARMC4Q5T2S8 1044 aa11.49□□□□□ -0.57
SS18-204ENST00000539244 SHISA2Q6UWI4 295 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms