RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 PCYT1BQ9Y5K3 369 aaPredicted RBP2.95□□□□□ -1.94
CD44-235ENST00000532339 FKBP7Q9Y680 259 aa2.95□□□□□ -1.94
CD44-235ENST00000532339 GSAPA4D1B5 854 aa2.94□□□□□ -1.94
CD44-235ENST00000532339 VSTM2BA6NLU5 285 aa2.94□□□□□ -1.94
CD44-235ENST00000532339 LRRC30A6NM36 301 aa2.94□□□□□ -1.94
CD44-235ENST00000532339 PDZK1P1A8MUH7 402 aa2.94□□□□□ -1.94
CD44-235ENST00000532339 MAPK13O15264 365 aa2.94□□□□□ -1.94
CD44-235ENST00000532339 KLRC4O43908 158 aa2.94□□□□□ -1.94
CD44-235ENST00000532339 IGLV3-25P01717 112 aa2.94□□□□□ -1.94
CD44-235ENST00000532339 GSTA1P08263 222 aa2.94□□□□□ -1.94
CD44-235ENST00000532339 ANXA4P09525 319 aaPredicted RBP2.94□□□□□ -1.94
CD44-235ENST00000532339 KRTAP1-4P0C5Y4 121 aa2.94□□□□□ -1.94
CD44-235ENST00000532339 THRBP10828 461 aa2.94□□□□□ -1.94
CD44-235ENST00000532339 EPB41P11171 864 aaKnown RBP2.94□□□□□ -1.94
CD44-235ENST00000532339 TSPAN8P19075 237 aa2.94□□□□□ -1.94
CD44-235ENST00000532339 TNNI3P19429 210 aa2.94□□□□□ -1.94
CD44-235ENST00000532339 DRD5P21918 477 aa2.94□□□□□ -1.94
CD44-235ENST00000532339 PCMT1P22061 227 aa2.94□□□□□ -1.94
CD44-235ENST00000532339 OR1E1P30953 314 aa2.94□□□□□ -1.94
CD44-235ENST00000532339 CCR1P32246 355 aa2.94□□□□□ -1.94
CD44-235ENST00000532339 OPRM1P35372 400 aa2.94□□□□□ -1.94
CD44-235ENST00000532339 RFC3P40938 356 aa2.94□□□□□ -1.94
CD44-235ENST00000532339 GPR1P46091 355 aa2.94□□□□□ -1.94
CD44-235ENST00000532339 HTR5AP47898 357 aa2.94□□□□□ -1.94
CD44-235ENST00000532339 KPNA2P52292 529 aaKnown RBP2.94□□□□□ -1.94
CD44-235ENST00000532339 ZNF136P52737 540 aa2.94□□□□□ -1.94
CD44-235ENST00000532339 RAG2P55895 527 aa2.94□□□□□ -1.94
CD44-235ENST00000532339 NDUFV3P56181 108 aaKnown RBP2.94□□□□□ -1.94
CD44-235ENST00000532339 UBA52P62987 128 aaKnown RBP2.94□□□□□ -1.94
CD44-235ENST00000532339 SRPXP78539 464 aa2.94□□□□□ -1.94
CD44-235ENST00000532339 SRYQ05066 204 aa2.94□□□□□ -1.94
CD44-235ENST00000532339 PIGHQ14442 188 aaPredicted RBP2.94□□□□□ -1.94
CD44-235ENST00000532339 SIX1Q15475 284 aaPredicted RBP2.94□□□□□ -1.94
CD44-235ENST00000532339 DMRTC1Q5HYR2 192 aa2.94□□□□□ -1.94
CD44-235ENST00000532339 H3F3CQ6NXT2 135 aa2.94□□□□□ -1.94
CD44-235ENST00000532339 LRRC8BQ6P9F7 803 aa2.94□□□□□ -1.94
CD44-235ENST00000532339 CBLN3Q6UW01 205 aa2.94□□□□□ -1.94
CD44-235ENST00000532339 CES3Q6UWW8 571 aa2.94□□□□□ -1.94
CD44-235ENST00000532339 ADAMTSL5Q6ZMM2 481 aa2.94□□□□□ -1.94
CD44-235ENST00000532339 LUZP1Q86V48 1076 aa2.94□□□□□ -1.94
CD44-235ENST00000532339 FAM131BQ86XD5 332 aa2.94□□□□□ -1.94
CD44-235ENST00000532339 ZNF584Q8IVC4 421 aa2.94□□□□□ -1.94
CD44-235ENST00000532339 CNPY4Q8N129 248 aa2.94□□□□□ -1.94
CD44-235ENST00000532339 ZNF491Q8N8L2 437 aa2.94□□□□□ -1.94
CD44-235ENST00000532339 ZDHHC22Q8N966 263 aa2.94□□□□□ -1.94
CD44-235ENST00000532339 ZFP62Q8NB50 900 aaPredicted RBP2.94□□□□□ -1.94
CD44-235ENST00000532339 SYT14Q8NB59 555 aa2.94□□□□□ -1.94
CD44-235ENST00000532339 OR1B1Q8NGR6 318 aa2.94□□□□□ -1.94
CD44-235ENST00000532339 ZPLD1Q8TCW7 415 aa2.94□□□□□ -1.94
CD44-235ENST00000532339 THRSPQ92748 146 aa2.94□□□□□ -1.94
CD44-235ENST00000532339 N4BP2L2Q92802 583 aaPredicted RBP2.94□□□□□ -1.94
CD44-235ENST00000532339 DLX4Q92988 240 aaPredicted RBP2.94□□□□□ -1.94
CD44-235ENST00000532339 LHX4Q969G2 390 aa2.94□□□□□ -1.94
CD44-235ENST00000532339 RBM18Q96H35 190 aaKnown RBP2.94□□□□□ -1.94
CD44-235ENST00000532339 C4orf36Q96KX1 117 aa2.94□□□□□ -1.94
CD44-235ENST00000532339 VSTM2LQ96N03 204 aa2.94□□□□□ -1.94
CD44-235ENST00000532339 ANKRD27Q96NW4 1050 aa2.94□□□□□ -1.94
CD44-235ENST00000532339 VPS35Q96QK1 796 aa2.94□□□□□ -1.94
CD44-235ENST00000532339 TXN2Q99757 166 aa2.94□□□□□ -1.94
CD44-235ENST00000532339 CITED1Q99966 193 aa2.94□□□□□ -1.94
CD44-235ENST00000532339 C19orf43Q9BQ61 176 aa2.94□□□□□ -1.94
CD44-235ENST00000532339 ERP44Q9BS26 406 aa2.94□□□□□ -1.94
CD44-235ENST00000532339 CCDC28BQ9BUN5 200 aa2.94□□□□□ -1.94
CD44-235ENST00000532339 TRIM62Q9BVG3 475 aa2.94□□□□□ -1.94
CD44-235ENST00000532339 DEFB127Q9H1M4 99 aa2.94□□□□□ -1.94
CD44-235ENST00000532339 IL1RL2Q9HB29 575 aa2.94□□□□□ -1.94
CD44-235ENST00000532339 SH2D2AQ9NP31 389 aa2.94□□□□□ -1.94
CD44-235ENST00000532339 SDAD1Q9NVU7 687 aaKnown RBP eCLIP2.94□□□□□ -1.94
CD44-235ENST00000532339 RDH8Q9NYR8 311 aa2.94□□□□□ -1.94
CD44-235ENST00000532339 CHRNA9Q9UGM1 479 aa2.94□□□□□ -1.94
CD44-235ENST00000532339 TBK1Q9UHD2 729 aa2.94□□□□□ -1.94
CD44-235ENST00000532339 ZNF346Q9UL40 294 aaKnown RBP2.94□□□□□ -1.94
CD44-235ENST00000532339 KLF13Q9Y2Y9 288 aaPredicted RBP2.94□□□□□ -1.94
CD44-235ENST00000532339 DMBT1Q9UGM3 2413 aaPredicted RBP2.93□□□□□ -1.94
CD44-235ENST00000532339 ALPK2Q86TB3 2170 aa2.93□□□□□ -1.94
CD44-235ENST00000532339 EML6Q6ZMW3 1958 aa2.93□□□□□ -1.94
CD44-235ENST00000532339 DYNC1H1Q14204 4646 aaKnown RBP2.93□□□□□ -1.94
CD44-235ENST00000532339 IGLV4-3A0A075B6K6 122 aa2.93□□□□□ -1.94
CD44-235ENST00000532339 A0A1B0GX78 115 aa2.93□□□□□ -1.94
CD44-235ENST00000532339 LRIT2A6NDA9 550 aa2.93□□□□□ -1.94
CD44-235ENST00000532339 ACOD1A6NK06 481 aa2.93□□□□□ -1.94
CD44-235ENST00000532339 OR52A4PA6NMU1 304 aa2.93□□□□□ -1.94
CD44-235ENST00000532339 KLLNB2CW77 178 aa2.93□□□□□ -1.94
CD44-235ENST00000532339 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP2.93□□□□□ -1.94
CD44-235ENST00000532339 PDLIM1O00151 329 aa2.93□□□□□ -1.94
CD44-235ENST00000532339 PDE5AO76074 875 aa2.93□□□□□ -1.94
CD44-235ENST00000532339 EPPINO95925 133 aa2.93□□□□□ -1.94
CD44-235ENST00000532339 SOD1P00441 154 aa2.93□□□□□ -1.94
CD44-235ENST00000532339 IGHG3P01860 377 aa2.93□□□□□ -1.94
CD44-235ENST00000532339 SOD3P08294 240 aa2.93□□□□□ -1.94
CD44-235ENST00000532339 HCKP08631 526 aa2.93□□□□□ -1.94
CD44-235ENST00000532339 SLC35G4P0C7Q5 338 aa2.93□□□□□ -1.94
CD44-235ENST00000532339 HTR2AP28223 471 aa2.93□□□□□ -1.94
CD44-235ENST00000532339 SAA4P35542 130 aa2.93□□□□□ -1.94
CD44-235ENST00000532339 HNMTP50135 292 aa2.93□□□□□ -1.94
CD44-235ENST00000532339 ATP4BP51164 291 aa2.93□□□□□ -1.94
CD44-235ENST00000532339 AP3M2P53677 418 aa2.93□□□□□ -1.94
CD44-235ENST00000532339 GNA12Q03113 381 aa2.93□□□□□ -1.94
CD44-235ENST00000532339 ZNF85Q03923 595 aa2.93□□□□□ -1.94
CD44-235ENST00000532339 BST2Q10589 180 aaKnown RBP2.93□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 74.3 ms