RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 DCTN6O00399 190 aa9.15□□□□□ -0.94
CD44-227ENST00000528086 CLPTM1O96005 669 aa9.15□□□□□ -0.94
CD44-227ENST00000528086 CD14P08571 375 aa9.15□□□□□ -0.94
CD44-227ENST00000528086 LYNX1P0DP58 116 aa9.15□□□□□ -0.94
CD44-227ENST00000528086 SAGP10523 405 aaPredicted RBP9.15□□□□□ -0.94
CD44-227ENST00000528086 CTLA4P16410 223 aa9.15□□□□□ -0.94
CD44-227ENST00000528086 ZNF32P17041 273 aa9.15□□□□□ -0.94
CD44-227ENST00000528086 APEX1P27695 318 aaKnown RBP9.15□□□□□ -0.94
CD44-227ENST00000528086 GLRXP35754 106 aa9.15□□□□□ -0.94
CD44-227ENST00000528086 WNT5AP41221 380 aa9.15□□□□□ -0.94
CD44-227ENST00000528086 PPOXP50336 477 aa9.15□□□□□ -0.94
CD44-227ENST00000528086 PSG4Q00888 419 aa9.15□□□□□ -0.94
CD44-227ENST00000528086 CHRNB3Q05901 458 aa9.15□□□□□ -0.94
CD44-227ENST00000528086 HNRNPA0Q13151 305 aaKnown RBP9.15□□□□□ -0.94
CD44-227ENST00000528086 MAD2L1BPQ15013 274 aaPredicted RBP9.15□□□□□ -0.94
CD44-227ENST00000528086 NRN1LQ496H8 165 aa9.15□□□□□ -0.94
CD44-227ENST00000528086 ZBED5Q49AG3 693 aa9.15□□□□□ -0.94
CD44-227ENST00000528086 OAFQ86UD1 273 aa9.15□□□□□ -0.94
CD44-227ENST00000528086 IL17RDQ8NFM7 739 aa9.15□□□□□ -0.94
CD44-227ENST00000528086 OR52J3Q8NH60 311 aa9.15□□□□□ -0.94
CD44-227ENST00000528086 GTF3AQ92664 365 aaKnown RBP9.15□□□□□ -0.94
CD44-227ENST00000528086 MRPL24Q96A35 216 aaKnown RBP9.15□□□□□ -0.94
CD44-227ENST00000528086 RASD2Q96D21 266 aa9.15□□□□□ -0.94
CD44-227ENST00000528086 POM121L2Q96KW2 1035 aa9.15□□□□□ -0.94
CD44-227ENST00000528086 FOXN4Q96NZ1 517 aa9.15□□□□□ -0.94
CD44-227ENST00000528086 GPX7Q96SL4 187 aaPredicted RBP9.15□□□□□ -0.94
CD44-227ENST00000528086 ALG12Q9BV10 488 aa9.15□□□□□ -0.94
CD44-227ENST00000528086 NSRP1Q9H0G5 558 aaKnown RBP9.15□□□□□ -0.94
CD44-227ENST00000528086 WNT5BQ9H1J7 359 aa9.15□□□□□ -0.94
CD44-227ENST00000528086 DENND2DQ9H6A0 471 aaPredicted RBP9.15□□□□□ -0.94
CD44-227ENST00000528086 SIAEQ9HAT2 523 aa9.15□□□□□ -0.94
CD44-227ENST00000528086 SMURF2Q9HAU4 748 aa9.15□□□□□ -0.94
CD44-227ENST00000528086 MOV10Q9HCE1 1003 aaKnown RBP9.15□□□□□ -0.94
CD44-227ENST00000528086 IL20RAQ9UHF4 553 aa9.15□□□□□ -0.94
CD44-227ENST00000528086 RPS6KA6Q9UK32 745 aa9.15□□□□□ -0.94
CD44-227ENST00000528086 MXRA5Q9NR99 2828 aa9.14□□□□□ -0.95
CD44-227ENST00000528086 KIAA1324LA8MWY0 1029 aaPredicted RBP9.14□□□□□ -0.95
CD44-227ENST00000528086 NDUFAB1O14561 156 aa9.14□□□□□ -0.95
CD44-227ENST00000528086 DYNC1I1O14576 645 aa9.14□□□□□ -0.95
CD44-227ENST00000528086 NCR1O76036 304 aa9.14□□□□□ -0.95
CD44-227ENST00000528086 MPZL1O95297 269 aa9.14□□□□□ -0.95
CD44-227ENST00000528086 ADRA2AP08913 450 aa9.14□□□□□ -0.95
CD44-227ENST00000528086 FAM157BP0CG42 384 aa9.14□□□□□ -0.95
CD44-227ENST00000528086 LAP3P28838 519 aa9.14□□□□□ -0.95
CD44-227ENST00000528086 CDKN2AP42771 156 aaKnown RBP9.14□□□□□ -0.95
CD44-227ENST00000528086 SLC9A3P48764 834 aa9.14□□□□□ -0.95
CD44-227ENST00000528086 LOXL1Q08397 574 aaPredicted RBP9.14□□□□□ -0.95
CD44-227ENST00000528086 TAF11Q15544 211 aa9.14□□□□□ -0.95
CD44-227ENST00000528086 TMEM249Q2WGJ8 235 aa9.14□□□□□ -0.95
CD44-227ENST00000528086 PABPC1L2AQ5JQF8 200 aa9.14□□□□□ -0.95
CD44-227ENST00000528086 SAMD4BQ5PRF9 694 aaKnown RBP9.14□□□□□ -0.95
CD44-227ENST00000528086 FAM27BQ5VT28 67 aa9.14□□□□□ -0.95
CD44-227ENST00000528086 SLC16A14Q7RTX9 510 aa9.14□□□□□ -0.95
CD44-227ENST00000528086 ZNF101Q8IZC7 436 aa9.14□□□□□ -0.95
CD44-227ENST00000528086 SLC30A7Q8NEW0 376 aa9.14□□□□□ -0.95
CD44-227ENST00000528086 OR4C15Q8NGM1 316 aa9.14□□□□□ -0.95
CD44-227ENST00000528086 AKR7LQ8NHP1 331 aa9.14□□□□□ -0.95
CD44-227ENST00000528086 VRK1Q99986 396 aaPredicted RBP9.14□□□□□ -0.95
CD44-227ENST00000528086 KCNS3Q9BQ31 491 aa9.14□□□□□ -0.95
CD44-227ENST00000528086 SYT3Q9BQG1 590 aa9.14□□□□□ -0.95
CD44-227ENST00000528086 RHNO1Q9BSD3 238 aa9.14□□□□□ -0.95
CD44-227ENST00000528086 ZNF416Q9BWM5 594 aa9.14□□□□□ -0.95
CD44-227ENST00000528086 NRIP3Q9NQ35 241 aa9.14□□□□□ -0.95
CD44-227ENST00000528086 PMF1-BGLAPU3KQ54 211 aa9.14□□□□□ -0.95
CD44-227ENST00000528086 IGLV3-9A0A075B6K5 115 aa9.13□□□□□ -0.95
CD44-227ENST00000528086 TEX13CA0A0J9YWL9 993 aa9.13□□□□□ -0.95
CD44-227ENST00000528086 PRSS37A4D1T9 235 aa9.13□□□□□ -0.95
CD44-227ENST00000528086 FAM171A2A8MVW0 826 aa9.13□□□□□ -0.95
CD44-227ENST00000528086 B2RBV5 119 aa9.13□□□□□ -0.95
CD44-227ENST00000528086 CD5LO43866 347 aa9.13□□□□□ -0.95
CD44-227ENST00000528086 DCTN3O75935 186 aa9.13□□□□□ -0.95
CD44-227ENST00000528086 STAMBPO95630 424 aa9.13□□□□□ -0.95
CD44-227ENST00000528086 SNAP29O95721 258 aa9.13□□□□□ -0.95
CD44-227ENST00000528086 RAB36O95755 333 aa9.13□□□□□ -0.95
CD44-227ENST00000528086 GPANK1O95872 356 aa9.13□□□□□ -0.95
CD44-227ENST00000528086 TXNDC12O95881 172 aa9.13□□□□□ -0.95
CD44-227ENST00000528086 FAM107AO95990 144 aa9.13□□□□□ -0.95
CD44-227ENST00000528086 HPXP02790 462 aa9.13□□□□□ -0.95
CD44-227ENST00000528086 IGHV4-31P0DP07 118 aa9.13□□□□□ -0.95
CD44-227ENST00000528086 ZNF250P15622 560 aa9.13□□□□□ -0.95
CD44-227ENST00000528086 IL2RGP31785 369 aa9.13□□□□□ -0.95
CD44-227ENST00000528086 RBMXP38159 391 aaKnown RBP9.13□□□□□ -0.95
CD44-227ENST00000528086 ALDH3B1P43353 468 aa9.13□□□□□ -0.95
CD44-227ENST00000528086 NR4A2P43354 598 aa9.13□□□□□ -0.95
CD44-227ENST00000528086 GSSP48637 474 aa9.13□□□□□ -0.95
CD44-227ENST00000528086 EVX1P49640 407 aa9.13□□□□□ -0.95
CD44-227ENST00000528086 SNRPD2P62316 118 aaKnown RBP9.13□□□□□ -0.95
CD44-227ENST00000528086 CD47Q08722 323 aa9.13□□□□□ -0.95
CD44-227ENST00000528086 SGCAQ16586 387 aa9.13□□□□□ -0.95
CD44-227ENST00000528086 ANKDD1AQ495B1 522 aa9.13□□□□□ -0.95
CD44-227ENST00000528086 SPRNQ5BIV9 151 aa9.13□□□□□ -0.95
CD44-227ENST00000528086 FGD3Q5JSP0 725 aa9.13□□□□□ -0.95
CD44-227ENST00000528086 ELFN2Q5R3F8 820 aa9.13□□□□□ -0.95
CD44-227ENST00000528086 THEM4Q5T1C6 240 aa9.13□□□□□ -0.95
CD44-227ENST00000528086 ZNF770Q6IQ21 691 aaPredicted RBP9.13□□□□□ -0.95
CD44-227ENST00000528086 CLEC2AQ6UVW9 174 aa9.13□□□□□ -0.95
CD44-227ENST00000528086 CYP2R1Q6VVX0 501 aa9.13□□□□□ -0.95
CD44-227ENST00000528086 FAM168AQ92567 244 aa9.13□□□□□ -0.95
CD44-227ENST00000528086 YIPF5Q969M3 257 aa9.13□□□□□ -0.95
CD44-227ENST00000528086 NSL1Q96IY1 281 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms