RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 ARGFXA6NJG6 315 aa3.99□□□□□ -1.77
CD44-220ENST00000525688 PRSS44E7EML9 344 aa3.99□□□□□ -1.77
CD44-220ENST00000525688 GATCO43716 136 aaKnown RBP3.99□□□□□ -1.77
CD44-220ENST00000525688 ADAP1O75689 374 aa3.99□□□□□ -1.77
CD44-220ENST00000525688 SC5DO75845 299 aa3.99□□□□□ -1.77
CD44-220ENST00000525688 VAMP5O95183 116 aa3.99□□□□□ -1.77
CD44-220ENST00000525688 UMODP07911 640 aa3.99□□□□□ -1.77
CD44-220ENST00000525688 H2BFMP0C1H6 154 aa3.99□□□□□ -1.77
CD44-220ENST00000525688 OR4E1P0C645 316 aa3.99□□□□□ -1.77
CD44-220ENST00000525688 PATE4P0C8F1 98 aa3.99□□□□□ -1.77
CD44-220ENST00000525688 ANXA3P12429 323 aa3.99□□□□□ -1.77
CD44-220ENST00000525688 CYBAP13498 195 aa3.99□□□□□ -1.77
CD44-220ENST00000525688 PSMB5P28074 263 aa3.99□□□□□ -1.77
CD44-220ENST00000525688 MAGEA6P43360 314 aa3.99□□□□□ -1.77
CD44-220ENST00000525688 CAPZBP47756 277 aa3.99□□□□□ -1.77
CD44-220ENST00000525688 RPL14P50914 215 aaKnown RBP3.99□□□□□ -1.77
CD44-220ENST00000525688 ERVK11-1P61568 191 aa3.99□□□□□ -1.77
CD44-220ENST00000525688 ARF6P62330 175 aa3.99□□□□□ -1.77
CD44-220ENST00000525688 SMARCB1Q12824 385 aa3.99□□□□□ -1.77
CD44-220ENST00000525688 ZP4Q12836 540 aa3.99□□□□□ -1.77
CD44-220ENST00000525688 KLF5Q13887 457 aaPredicted RBP3.99□□□□□ -1.77
CD44-220ENST00000525688 ATXN7L3Q14CW9 347 aaPredicted RBP3.99□□□□□ -1.77
CD44-220ENST00000525688 PDK2Q15119 407 aa3.99□□□□□ -1.77
CD44-220ENST00000525688 TAB1Q15750 504 aa3.99□□□□□ -1.77
CD44-220ENST00000525688 ZBTB6Q15916 424 aa3.99□□□□□ -1.77
CD44-220ENST00000525688 IMPG1Q17R60 797 aa3.99□□□□□ -1.77
CD44-220ENST00000525688 SLC22A6Q4U2R8 563 aa3.99□□□□□ -1.77
CD44-220ENST00000525688 SEL1L2Q5TEA6 688 aa3.99□□□□□ -1.77
CD44-220ENST00000525688 REEP3Q6NUK4 255 aa3.99□□□□□ -1.77
CD44-220ENST00000525688 PRMT9Q6P2P2 845 aa3.99□□□□□ -1.77
CD44-220ENST00000525688 LEG1Q6P5S2 330 aa3.99□□□□□ -1.77
CD44-220ENST00000525688 ENPP6Q6UWR7 440 aa3.99□□□□□ -1.77
CD44-220ENST00000525688 C17orf107Q6ZR85 190 aa3.99□□□□□ -1.77
CD44-220ENST00000525688 ZNF621Q6ZSS3 439 aa3.99□□□□□ -1.77
CD44-220ENST00000525688 ASRGL1Q7L266 308 aa3.99□□□□□ -1.77
CD44-220ENST00000525688 C17orf64Q86WR6 236 aa3.99□□□□□ -1.77
CD44-220ENST00000525688 ZNF677Q86XU0 584 aa3.99□□□□□ -1.77
CD44-220ENST00000525688 JAGN1Q8N5M9 183 aa3.99□□□□□ -1.77
CD44-220ENST00000525688 CDRT4Q8N9R6 151 aa3.99□□□□□ -1.77
CD44-220ENST00000525688 TMEM178AQ8NBL3 297 aa3.99□□□□□ -1.77
CD44-220ENST00000525688 OR4F6Q8NGB9 312 aa3.99□□□□□ -1.77
CD44-220ENST00000525688 OR52I1Q8NGK6 324 aa3.99□□□□□ -1.77
CD44-220ENST00000525688 OR6X1Q8NH79 312 aa3.99□□□□□ -1.77
CD44-220ENST00000525688 RDH11Q8TC12 318 aa3.99□□□□□ -1.77
CD44-220ENST00000525688 GPR151Q8TDV0 419 aa3.99□□□□□ -1.77
CD44-220ENST00000525688 DNAJB3Q8WWF6 145 aa3.99□□□□□ -1.77
CD44-220ENST00000525688 SLC35C1Q96A29 364 aa3.99□□□□□ -1.77
CD44-220ENST00000525688 CELF6Q96J87 481 aaKnown RBP3.99□□□□□ -1.77
CD44-220ENST00000525688 RNF170Q96K19 258 aa3.99□□□□□ -1.77
CD44-220ENST00000525688 XPO6Q96QU8 1125 aaKnown RBP3.99□□□□□ -1.77
CD44-220ENST00000525688 F2RL3Q96RI0 385 aa3.99□□□□□ -1.77
CD44-220ENST00000525688 IL12RB2Q99665 862 aa3.99□□□□□ -1.77
CD44-220ENST00000525688 NEUROG2Q9H2A3 272 aa3.99□□□□□ -1.77
CD44-220ENST00000525688 SYT4Q9H2B2 425 aa3.99□□□□□ -1.77
CD44-220ENST00000525688 C12orf10Q9HB07 376 aa3.99□□□□□ -1.77
CD44-220ENST00000525688 NMRAL1Q9HBL8 299 aa3.99□□□□□ -1.77
CD44-220ENST00000525688 SDF2L1Q9HCN8 221 aa3.99□□□□□ -1.77
CD44-220ENST00000525688 ZC4H2Q9NQZ6 224 aa3.99□□□□□ -1.77
CD44-220ENST00000525688 SIRT7Q9NRC8 400 aa3.99□□□□□ -1.77
CD44-220ENST00000525688 TAS2R9Q9NYW1 312 aa3.99□□□□□ -1.77
CD44-220ENST00000525688 ZNF319Q9P2F9 582 aa3.99□□□□□ -1.77
CD44-220ENST00000525688 GHRLQ9UBU3 117 aa3.99□□□□□ -1.77
CD44-220ENST00000525688 ANAPC7Q9UJX3 599 aa3.99□□□□□ -1.77
CD44-220ENST00000525688 POMT2Q9UKY4 750 aa3.99□□□□□ -1.77
CD44-220ENST00000525688 SELENOKQ9Y6D0 94 aa3.99□□□□□ -1.77
CD44-220ENST00000525688 CEP290O15078 2479 aa3.99□□□□□ -1.77
CD44-220ENST00000525688 ZNFX1Q9P2E3 1918 aaKnown RBP3.99□□□□□ -1.77
CD44-220ENST00000525688 ABCB11O95342 1321 aa3.98□□□□□ -1.77
CD44-220ENST00000525688 A0A1B0GUS0 222 aa3.98□□□□□ -1.77
CD44-220ENST00000525688 GOLGA6L10A6NI86 522 aa3.98□□□□□ -1.77
CD44-220ENST00000525688 CENPXA8MT69 81 aa3.98□□□□□ -1.77
CD44-220ENST00000525688 TMEM114B3SHH9 223 aa3.98□□□□□ -1.77
CD44-220ENST00000525688 CLDN34H7C241 214 aa3.98□□□□□ -1.77
CD44-220ENST00000525688 M0QXV9 152 aa3.98□□□□□ -1.77
CD44-220ENST00000525688 SIRPB1O00241 398 aa3.98□□□□□ -1.77
CD44-220ENST00000525688 TFECO14948 347 aaPredicted RBP3.98□□□□□ -1.77
CD44-220ENST00000525688 MLNRO43193 412 aa3.98□□□□□ -1.77
CD44-220ENST00000525688 SLC19A2O60779 497 aa3.98□□□□□ -1.77
CD44-220ENST00000525688 HSBP1O75506 76 aa3.98□□□□□ -1.77
CD44-220ENST00000525688 DIRAS1O95057 198 aa3.98□□□□□ -1.77
CD44-220ENST00000525688 NXPH2O95156 264 aa3.98□□□□□ -1.77
CD44-220ENST00000525688 LRATO95237 230 aa3.98□□□□□ -1.77
CD44-220ENST00000525688 DEXIO95424 95 aa3.98□□□□□ -1.77
CD44-220ENST00000525688 LDOC1O95751 146 aaPredicted RBP3.98□□□□□ -1.77
CD44-220ENST00000525688 HLA-HP01893 362 aa3.98□□□□□ -1.77
CD44-220ENST00000525688 IFNW1P05000 195 aa3.98□□□□□ -1.77
CD44-220ENST00000525688 CALM1P0DP23 149 aa3.98□□□□□ -1.77
CD44-220ENST00000525688 CALM2P0DP24 149 aa3.98□□□□□ -1.77
CD44-220ENST00000525688 CALM3P0DP25 149 aa3.98□□□□□ -1.77
CD44-220ENST00000525688 GNB3P16520 340 aa3.98□□□□□ -1.77
CD44-220ENST00000525688 CTRB1P17538 263 aa3.98□□□□□ -1.77
CD44-220ENST00000525688 RAB4AP20338 218 aa3.98□□□□□ -1.77
CD44-220ENST00000525688 IMPDH1P20839 514 aa3.98□□□□□ -1.77
CD44-220ENST00000525688 GLRA1P23415 457 aa3.98□□□□□ -1.77
CD44-220ENST00000525688 G0S2P27469 103 aa3.98□□□□□ -1.77
CD44-220ENST00000525688 CHRNB4P30926 498 aa3.98□□□□□ -1.77
CD44-220ENST00000525688 SOX3P41225 446 aa3.98□□□□□ -1.77
CD44-220ENST00000525688 CXCR4P61073 352 aa3.98□□□□□ -1.77
CD44-220ENST00000525688 RPS4XP62701 263 aaKnown RBP3.98□□□□□ -1.77
CD44-220ENST00000525688 RPS6P62753 249 aaKnown RBP3.98□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms