RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 ULBP2Q9BZM5 246 aa13.46□□□□□ -0.25
LSM1-203ENST00000520755 GPR35Q9HC97 309 aa13.46□□□□□ -0.25
LSM1-203ENST00000520755 FKBP7Q9Y680 259 aa13.46□□□□□ -0.25
LSM1-203ENST00000520755 OR6C65A6NJZ3 312 aa13.45□□□□□ -0.26
LSM1-203ENST00000520755 ZNF587BE7ETH6 402 aa13.45□□□□□ -0.26
LSM1-203ENST00000520755 DENRO43583 198 aaKnown RBP13.45□□□□□ -0.26
LSM1-203ENST00000520755 SLC16A7O60669 478 aa13.45□□□□□ -0.26
LSM1-203ENST00000520755 GPANK1O95872 356 aa13.45□□□□□ -0.26
LSM1-203ENST00000520755 ITGA5P08648 1049 aa13.45□□□□□ -0.26
LSM1-203ENST00000520755 GAAP10253 952 aa13.45□□□□□ -0.26
LSM1-203ENST00000520755 COX5AP20674 150 aa13.45□□□□□ -0.26
LSM1-203ENST00000520755 IL32P24001 234 aa13.45□□□□□ -0.26
LSM1-203ENST00000520755 SORDQ00796 357 aa13.45□□□□□ -0.26
LSM1-203ENST00000520755 ROR2Q01974 943 aaKnown RBP13.45□□□□□ -0.26
LSM1-203ENST00000520755 P2RY6Q15077 328 aa13.45□□□□□ -0.26
LSM1-203ENST00000520755 SMN1Q16637 294 aaKnown RBP13.45□□□□□ -0.26
LSM1-203ENST00000520755 SLC25A30Q5SVS4 291 aa13.45□□□□□ -0.26
LSM1-203ENST00000520755 THEM4Q5T1C6 240 aa13.45□□□□□ -0.26
LSM1-203ENST00000520755 SFRP5Q5T4F7 317 aa13.45□□□□□ -0.26
LSM1-203ENST00000520755 NXNL2Q5VZ03 156 aa13.45□□□□□ -0.26
LSM1-203ENST00000520755 HIST2H2BCQ6DN03 193 aa13.45□□□□□ -0.26
LSM1-203ENST00000520755 FOXL2NBQ6ZUU3 175 aa13.45□□□□□ -0.26
LSM1-203ENST00000520755 BHLHA15Q7RTS1 189 aaPredicted RBP13.45□□□□□ -0.26
LSM1-203ENST00000520755 ABHD12BQ7Z5M8 362 aaPredicted RBP13.45□□□□□ -0.26
LSM1-203ENST00000520755 DMRTC2Q8IXT2 367 aaPredicted RBP13.45□□□□□ -0.26
LSM1-203ENST00000520755 OR51L1Q8NGJ5 315 aa13.45□□□□□ -0.26
LSM1-203ENST00000520755 LINC01560Q8TB33 94 aa13.45□□□□□ -0.26
LSM1-203ENST00000520755 TRUB1Q8WWH5 349 aaKnown RBP13.45□□□□□ -0.26
LSM1-203ENST00000520755 HTRA1Q92743 480 aa13.45□□□□□ -0.26
LSM1-203ENST00000520755 ZNF582Q96NG8 517 aaPredicted RBP13.45□□□□□ -0.26
LSM1-203ENST00000520755 FOXN4Q96NZ1 517 aa13.45□□□□□ -0.26
LSM1-203ENST00000520755 RACGAP1Q9H0H5 632 aa13.45□□□□□ -0.26
LSM1-203ENST00000520755 CRLF2Q9HC73 371 aa13.45□□□□□ -0.26
LSM1-203ENST00000520755 B9D1Q9UPM9 204 aa13.45□□□□□ -0.26
LSM1-203ENST00000520755 HSPE1-MOB4S4R3N1 261 aa13.45□□□□□ -0.26
LSM1-203ENST00000520755 ADGRG4Q8IZF6 3080 aa13.45□□□□□ -0.26
LSM1-203ENST00000520755 CIB4A0PJX0 185 aa13.44□□□□□ -0.26
LSM1-203ENST00000520755 TUBAL3A6NHL2 446 aa13.44□□□□□ -0.26
LSM1-203ENST00000520755 FAM171A2A8MVW0 826 aa13.44□□□□□ -0.26
LSM1-203ENST00000520755 RPL36A-HNRNPH2H7BZ11 118 aa13.44□□□□□ -0.26
LSM1-203ENST00000520755 DHHO43323 396 aa13.44□□□□□ -0.26
LSM1-203ENST00000520755 ENTPD6O75354 484 aa13.44□□□□□ -0.26
LSM1-203ENST00000520755 RAD51DO75771 328 aa13.44□□□□□ -0.26
LSM1-203ENST00000520755 SCG5P05408 212 aa13.44□□□□□ -0.26
LSM1-203ENST00000520755 PSKH1P11801 424 aa13.44□□□□□ -0.26
LSM1-203ENST00000520755 IGFBP2P18065 325 aa13.44□□□□□ -0.26
LSM1-203ENST00000520755 PSMB1P20618 241 aaKnown RBP13.44□□□□□ -0.26
LSM1-203ENST00000520755 PAICSP22234 425 aaKnown RBP13.44□□□□□ -0.26
LSM1-203ENST00000520755 MPGP29372 298 aa13.44□□□□□ -0.26
LSM1-203ENST00000520755 OCLNQ16625 522 aa13.44□□□□□ -0.26
LSM1-203ENST00000520755 CEACAM16Q2WEN9 425 aa13.44□□□□□ -0.26
LSM1-203ENST00000520755 OTPQ5XKR4 325 aa13.44□□□□□ -0.26
LSM1-203ENST00000520755 B3GLCTQ6Y288 498 aa13.44□□□□□ -0.26
LSM1-203ENST00000520755 THAP5Q7Z6K1 395 aa13.44□□□□□ -0.26
LSM1-203ENST00000520755 ZNF433Q8N7K0 673 aaPredicted RBP13.44□□□□□ -0.26
LSM1-203ENST00000520755 FNDC8Q8TC99 324 aa13.44□□□□□ -0.26
LSM1-203ENST00000520755 NSMAFQ92636 917 aa13.44□□□□□ -0.26
LSM1-203ENST00000520755 NABP1Q96AH0 204 aa13.44□□□□□ -0.26
LSM1-203ENST00000520755 OTULINQ96BN8 352 aa13.44□□□□□ -0.26
LSM1-203ENST00000520755 CNBD2Q96M20 576 aa13.44□□□□□ -0.26
LSM1-203ENST00000520755 HDHD5Q9BXW7 423 aa13.44□□□□□ -0.26
LSM1-203ENST00000520755 ACTR6Q9GZN1 396 aa13.44□□□□□ -0.26
LSM1-203ENST00000520755 NELFAQ9H3P2 528 aa13.44□□□□□ -0.26
LSM1-203ENST00000520755 SRA1Q9HD15 236 aaKnown RBP13.44□□□□□ -0.26
LSM1-203ENST00000520755 B3GAT2Q9NPZ5 323 aa13.44□□□□□ -0.26
LSM1-203ENST00000520755 TAS2R16Q9NYV7 291 aa13.44□□□□□ -0.26
LSM1-203ENST00000520755 UBAP1Q9NZ09 502 aa13.44□□□□□ -0.26
LSM1-203ENST00000520755 COA3Q9Y2R0 106 aaPredicted RBP13.44□□□□□ -0.26
LSM1-203ENST00000520755 LRRC42Q9Y546 428 aa13.44□□□□□ -0.26
LSM1-203ENST00000520755 SPTAN1Q13813 2472 aaKnown RBP13.44□□□□□ -0.26
LSM1-203ENST00000520755 USP9YO00507 2555 aaPredicted RBP13.43□□□□□ -0.26
LSM1-203ENST00000520755 PRODHO43272 600 aa13.43□□□□□ -0.26
LSM1-203ENST00000520755 MPZL2O60487 215 aa13.43□□□□□ -0.26
LSM1-203ENST00000520755 SEC14L2O76054 403 aa13.43□□□□□ -0.26
LSM1-203ENST00000520755 NR2C1P13056 603 aa13.43□□□□□ -0.26
LSM1-203ENST00000520755 COX6B1P14854 86 aa13.43□□□□□ -0.26
LSM1-203ENST00000520755 FMO3P31513 532 aa13.43□□□□□ -0.26
LSM1-203ENST00000520755 PEX19P40855 299 aa13.43□□□□□ -0.26
LSM1-203ENST00000520755 KIR2DL3P43628 341 aa13.43□□□□□ -0.26
LSM1-203ENST00000520755 NUDT6P53370 316 aa13.43□□□□□ -0.26
LSM1-203ENST00000520755 TEKQ02763 1124 aa13.43□□□□□ -0.26
LSM1-203ENST00000520755 CDK5R2Q13319 367 aa13.43□□□□□ -0.26
LSM1-203ENST00000520755 APOFQ13790 326 aa13.43□□□□□ -0.26
LSM1-203ENST00000520755 STK11Q15831 433 aa13.43□□□□□ -0.26
LSM1-203ENST00000520755 PROKR2Q8NFJ6 384 aa13.43□□□□□ -0.26
LSM1-203ENST00000520755 STEAP2Q8NFT2 490 aa13.43□□□□□ -0.26
LSM1-203ENST00000520755 OR2T4Q8NH00 348 aa13.43□□□□□ -0.26
LSM1-203ENST00000520755 S100PBPQ96BU1 408 aa13.43□□□□□ -0.26
LSM1-203ENST00000520755 ZC3HAV1LQ96H79 300 aaKnown RBP13.43□□□□□ -0.26
LSM1-203ENST00000520755 RBP7Q96R05 134 aa13.43□□□□□ -0.26
LSM1-203ENST00000520755 MED18Q9BUE0 208 aa13.43□□□□□ -0.26
LSM1-203ENST00000520755 OR51V1Q9H2C8 321 aa13.43□□□□□ -0.26
LSM1-203ENST00000520755 RERGLQ9H628 205 aa13.43□□□□□ -0.26
LSM1-203ENST00000520755 MRPL22Q9NWU5 206 aaKnown RBP13.43□□□□□ -0.26
LSM1-203ENST00000520755 NDRG3Q9UGV2 375 aa13.43□□□□□ -0.26
LSM1-203ENST00000520755 SH3D21A4FU49 640 aa13.42□□□□□ -0.26
LSM1-203ENST00000520755 KHDRBS3O75525 346 aaKnown RBP13.42□□□□□ -0.26
LSM1-203ENST00000520755 GLCEO94923 617 aa13.42□□□□□ -0.26
LSM1-203ENST00000520755 MPZL1O95297 269 aa13.42□□□□□ -0.26
LSM1-203ENST00000520755 TFP02787 698 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms