RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 RAB11BQ15907 218 aa5.1□□□□□ -1.59
NUP54-215ENST00000514313 RFX4Q33E94 735 aa5.1□□□□□ -1.59
NUP54-215ENST00000514313 SPECC1LQ69YQ0 1117 aa5.1□□□□□ -1.59
NUP54-215ENST00000514313 ANGPTL8Q6UXH0 198 aa5.1□□□□□ -1.59
NUP54-215ENST00000514313 COX15Q7KZN9 410 aa5.1□□□□□ -1.59
NUP54-215ENST00000514313 PEX26Q7Z412 305 aa5.1□□□□□ -1.59
NUP54-215ENST00000514313 NUBPLQ8TB37 319 aa5.1□□□□□ -1.59
NUP54-215ENST00000514313 ZNF75CPQ92670 426 aaPredicted RBP5.1□□□□□ -1.59
NUP54-215ENST00000514313 MYDGFQ969H8 173 aa5.1□□□□□ -1.59
NUP54-215ENST00000514313 PXMP2Q9NR77 195 aa5.1□□□□□ -1.59
NUP54-215ENST00000514313 MYEF2Q9P2K5 600 aaKnown RBP5.1□□□□□ -1.59
NUP54-215ENST00000514313 HEBP2Q9Y5Z4 205 aa5.1□□□□□ -1.59
NUP54-215ENST00000514313 SMAD5-AS1Q9Y6J3 95 aa5.1□□□□□ -1.59
NUP54-215ENST00000514313 COL2A1P02458 1487 aaPredicted RBP5.09□□□□□ -1.59
NUP54-215ENST00000514313 CEMIPQ8WUJ3 1361 aa5.09□□□□□ -1.59
NUP54-215ENST00000514313 A0A1B0GW55 424 aa5.09□□□□□ -1.59
NUP54-215ENST00000514313 H3BNH8 94 aa5.09□□□□□ -1.59
NUP54-215ENST00000514313 SCAMP2O15127 329 aaKnown RBP5.09□□□□□ -1.59
NUP54-215ENST00000514313 CLDN11O75508 207 aa5.09□□□□□ -1.59
NUP54-215ENST00000514313 FGFR1OPO95684 399 aaKnown RBP5.09□□□□□ -1.59
NUP54-215ENST00000514313 SERPINE2P07093 398 aa5.09□□□□□ -1.59
NUP54-215ENST00000514313 DUX4L2P0CJ85 424 aa5.09□□□□□ -1.59
NUP54-215ENST00000514313 DUX4L3P0CJ86 424 aa5.09□□□□□ -1.59
NUP54-215ENST00000514313 DUX4L4P0CJ87 422 aa5.09□□□□□ -1.59
NUP54-215ENST00000514313 DUX4L5P0CJ88 424 aa5.09□□□□□ -1.59
NUP54-215ENST00000514313 DUX4L6P0CJ89 424 aa5.09□□□□□ -1.59
NUP54-215ENST00000514313 DUX4L7P0CJ90 424 aa5.09□□□□□ -1.59
NUP54-215ENST00000514313 CALM1P0DP23 149 aa5.09□□□□□ -1.59
NUP54-215ENST00000514313 CALM2P0DP24 149 aa5.09□□□□□ -1.59
NUP54-215ENST00000514313 CALM3P0DP25 149 aa5.09□□□□□ -1.59
NUP54-215ENST00000514313 HRH1P35367 487 aa5.09□□□□□ -1.59
NUP54-215ENST00000514313 SLC26A3P40879 764 aa5.09□□□□□ -1.59
NUP54-215ENST00000514313 NCBP2P52298 156 aaKnown RBP eCLIP5.09□□□□□ -1.59
NUP54-215ENST00000514313 TWF1Q12792 350 aa5.09□□□□□ -1.59
NUP54-215ENST00000514313 CLINT1Q14677 625 aa5.09□□□□□ -1.59
NUP54-215ENST00000514313 TRAM2Q15035 370 aa5.09□□□□□ -1.59
NUP54-215ENST00000514313 WDR43Q15061 677 aaKnown RBP eCLIP5.09□□□□□ -1.59
NUP54-215ENST00000514313 PSG5Q15238 335 aa5.09□□□□□ -1.59
NUP54-215ENST00000514313 GUCA2BQ16661 112 aa5.09□□□□□ -1.59
NUP54-215ENST00000514313 FRMPD2BQ6IN97 320 aa5.09□□□□□ -1.59
NUP54-215ENST00000514313 DUX4L9Q6RFH8 374 aaPredicted RBP5.09□□□□□ -1.59
NUP54-215ENST00000514313 JAGN1Q8N5M9 183 aa5.09□□□□□ -1.59
NUP54-215ENST00000514313 OR52K1Q8NGK4 314 aa5.09□□□□□ -1.59
NUP54-215ENST00000514313 OR5K2Q8NHB8 316 aa5.09□□□□□ -1.59
NUP54-215ENST00000514313 DTX3LQ8TDB6 740 aa5.09□□□□□ -1.59
NUP54-215ENST00000514313 PHYHIPLQ96FC7 376 aa5.09□□□□□ -1.59
NUP54-215ENST00000514313 SERPINB12Q96P63 405 aa5.09□□□□□ -1.59
NUP54-215ENST00000514313 OR2M2Q96R28 347 aa5.09□□□□□ -1.59
NUP54-215ENST00000514313 ECSITQ9BQ95 431 aa5.09□□□□□ -1.59
NUP54-215ENST00000514313 NTN4Q9HB63 628 aa5.09□□□□□ -1.59
NUP54-215ENST00000514313 DUX4Q9UBX2 424 aa5.09□□□□□ -1.59
NUP54-215ENST00000514313 F11RQ9Y624 299 aaKnown RBP5.09□□□□□ -1.59
NUP54-215ENST00000514313 ERI2A8K979 691 aaKnown RBP5.08□□□□□ -1.6
NUP54-215ENST00000514313 M0R3G1 203 aa5.08□□□□□ -1.6
NUP54-215ENST00000514313 FCN3O75636 299 aa5.08□□□□□ -1.6
NUP54-215ENST00000514313 CD160O95971 181 aa5.08□□□□□ -1.6
NUP54-215ENST00000514313 IGLV1-47P01700 117 aa5.08□□□□□ -1.6
NUP54-215ENST00000514313 AK4P27144 223 aaPredicted RBP5.08□□□□□ -1.6
NUP54-215ENST00000514313 OR1E1P30953 314 aa5.08□□□□□ -1.6
NUP54-215ENST00000514313 KRTAP10-12P60413 245 aa5.08□□□□□ -1.6
NUP54-215ENST00000514313 STXBP1P61764 594 aaKnown RBP5.08□□□□□ -1.6
NUP54-215ENST00000514313 SP4Q02446 784 aa5.08□□□□□ -1.6
NUP54-215ENST00000514313 PGGHGQ32M88 737 aa5.08□□□□□ -1.6
NUP54-215ENST00000514313 MBOAT1Q6ZNC8 495 aa5.08□□□□□ -1.6
NUP54-215ENST00000514313 C8orf31Q8N9H6 132 aa5.08□□□□□ -1.6
NUP54-215ENST00000514313 KIAA1143Q96AT1 154 aaPredicted RBP5.08□□□□□ -1.6
NUP54-215ENST00000514313 AURKBQ96GD4 344 aaPredicted RBP5.08□□□□□ -1.6
NUP54-215ENST00000514313 CTPS2Q9NRF8 586 aa5.08□□□□□ -1.6
NUP54-215ENST00000514313 AGPAT4Q9NRZ5 378 aa5.08□□□□□ -1.6
NUP54-215ENST00000514313 ZNF225Q9UK10 706 aa5.08□□□□□ -1.6
NUP54-215ENST00000514313 ARHGAP23Q9P227 1491 aa5.07□□□□□ -1.6
NUP54-215ENST00000514313 TRAV39A0A0B4J263 110 aa5.07□□□□□ -1.6
NUP54-215ENST00000514313 BOLA2-SMG1P6H3BVE0 249 aa5.07□□□□□ -1.6
NUP54-215ENST00000514313 PEX7O00628 323 aa5.07□□□□□ -1.6
NUP54-215ENST00000514313 ICOSLGO75144 302 aa5.07□□□□□ -1.6
NUP54-215ENST00000514313 FKBP6O75344 327 aa5.07□□□□□ -1.6
NUP54-215ENST00000514313 CRISP2P16562 243 aa5.07□□□□□ -1.6
NUP54-215ENST00000514313 DAOAP59103 153 aa5.07□□□□□ -1.6
NUP54-215ENST00000514313 UBE2MP61081 183 aaKnown RBP5.07□□□□□ -1.6
NUP54-215ENST00000514313 MXD1Q05195 221 aa5.07□□□□□ -1.6
NUP54-215ENST00000514313 RAD51Q06609 339 aa5.07□□□□□ -1.6
NUP54-215ENST00000514313 PSG7Q13046 419 aa5.07□□□□□ -1.6
NUP54-215ENST00000514313 ZNF726P1Q15940 193 aa5.07□□□□□ -1.6
NUP54-215ENST00000514313 BEX5Q5H9J7 111 aa5.07□□□□□ -1.6
NUP54-215ENST00000514313 SPESP1Q6UW49 350 aa5.07□□□□□ -1.6
NUP54-215ENST00000514313 TMEM179Q6ZVK1 233 aa5.07□□□□□ -1.6
NUP54-215ENST00000514313 CCDC54Q8NEL0 328 aa5.07□□□□□ -1.6
NUP54-215ENST00000514313 OR56A4Q8NGH8 313 aa5.07□□□□□ -1.6
NUP54-215ENST00000514313 DNAJC19Q96DA6 116 aa5.07□□□□□ -1.6
NUP54-215ENST00000514313 SLC35E1Q96K37 410 aa5.07□□□□□ -1.6
NUP54-215ENST00000514313 RGCCQ9H4X1 137 aa5.07□□□□□ -1.6
NUP54-215ENST00000514313 CHRAC1Q9NRG0 131 aa5.07□□□□□ -1.6
NUP54-215ENST00000514313 SLC25A37Q9NYZ2 338 aa5.07□□□□□ -1.6
NUP54-215ENST00000514313 STOX2Q9P2F5 926 aaPredicted RBP5.07□□□□□ -1.6
NUP54-215ENST00000514313 ST3GAL6Q9Y274 331 aa5.07□□□□□ -1.6
NUP54-215ENST00000514313 UBN2Q6ZU65 1347 aa5.06□□□□□ -1.6
NUP54-215ENST00000514313 CIB4A0PJX0 185 aa5.06□□□□□ -1.6
NUP54-215ENST00000514313 LYRM9A8MSI8 78 aa5.06□□□□□ -1.6
NUP54-215ENST00000514313 H0YHG0 523 aa5.06□□□□□ -1.6
NUP54-215ENST00000514313 SIVA1O15304 175 aa5.06□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms