RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 YWHAGP61981 247 aaKnown RBP eCLIP1.45□□□□□ -2.18
NUP54-208ENST00000508604 TIMM10P62072 90 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 ACTA2P62736 377 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 ERVK-8P63133 956 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 KCNJ2P63252 427 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 ACTG1P63261 375 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 ACTG2P63267 376 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 ACTC1P68032 377 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 ACTA1P68133 377 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 PSPHP78330 225 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 PUDPQ08623 228 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 SRSF5Q13243 272 aaKnown RBP1.45□□□□□ -2.18
NUP54-208ENST00000508604 SCGB2A2Q13296 93 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 TSTA3Q13630 321 aaPredicted RBP1.45□□□□□ -2.18
NUP54-208ENST00000508604 PDE7AQ13946 482 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 GAMTQ14353 236 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 GK2Q14410 553 aaPredicted RBP1.45□□□□□ -2.18
NUP54-208ENST00000508604 GPR176Q14439 515 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 GPNMBQ14956 572 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 HEPACAMQ14CZ8 416 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 PTGES3Q15185 160 aaKnown RBP1.45□□□□□ -2.18
NUP54-208ENST00000508604 RPS6KA1Q15418 735 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 SLC15A2Q16348 729 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 NDUFAF6Q330K2 333 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 GLYR1Q49A26 553 aaPredicted RBP1.45□□□□□ -2.18
NUP54-208ENST00000508604 BCL7AQ4VC05 210 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 RABGAP1LQ5R372 815 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 PPM1LQ5SGD2 360 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 DNLZQ5SXM8 178 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 SEL1L2Q5TEA6 688 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 LRRC38Q5VT99 294 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 MFSD14CQ5VZR4 134 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 LRRC66Q68CR7 880 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 NANOGP8Q6NSW7 305 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 IGFL1Q6UW32 110 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 TMIGD1Q6UXZ0 262 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 CERS6Q6ZMG9 384 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 FAM92BQ6ZTR7 304 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 PGAP1Q75T13 922 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 VTCN1Q7Z7D3 282 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 CROCCP2Q86T23 111 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 TMEM17Q86X19 198 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 SERPINA12Q8IW75 414 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 CENPLQ8N0S6 344 aaPredicted RBP1.45□□□□□ -2.18
NUP54-208ENST00000508604 STK40Q8N2I9 435 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 DCAF4L2Q8NA75 395 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 SYT14Q8NB59 555 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 ACBD4Q8NC06 268 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 LEMD2Q8NC56 503 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 CHDHQ8NE62 594 aaPredicted RBP1.45□□□□□ -2.18
NUP54-208ENST00000508604 BPIFCQ8NFQ6 507 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 STEAP2Q8NFT2 490 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 OR10A7Q8NGE5 316 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 OR5M1Q8NGP8 315 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 OR2T34Q8NGX1 318 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 OR2T3Q8NH03 318 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 OR2V1Q8NHB1 315 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 ZNF420Q8TAQ5 688 aaPredicted RBP1.45□□□□□ -2.18
NUP54-208ENST00000508604 NDNFQ8TB73 568 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 NANPQ8TBE9 248 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 RAET1EQ8TD07 263 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 S100ZQ8WXG8 99 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 ELMO1Q92556 727 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 C18orf25Q96B23 403 aaPredicted RBP1.45□□□□□ -2.18
NUP54-208ENST00000508604 CDKN2AIPNLQ96HQ2 116 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 C12orf66Q96MD2 445 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 FOPNLQ96NB1 174 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 WFIKKN1Q96NZ8 548 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 SERPINI1Q99574 410 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 PRRT1Q99946 306 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 ZNF2Q9BSG1 426 aaPredicted RBP1.45□□□□□ -2.18
NUP54-208ENST00000508604 TUBGCP2Q9BSJ2 902 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 COPS4Q9BT78 406 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 PDCD10Q9BUL8 212 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 C1orf50Q9BV19 199 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 TPPP3Q9BW30 176 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 MND1Q9BWT6 205 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 PKIBQ9C010 78 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 Q9H521 79 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 RANBP3Q9H6Z4 567 aaPredicted RBP1.45□□□□□ -2.18
NUP54-208ENST00000508604 ECT2Q9H8V3 914 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 SDHAF2Q9NX18 166 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 TREM2Q9NZC2 230 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 BCAP29Q9UHQ4 241 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 ENPP5Q9UJA9 477 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 ZNF221Q9UK13 617 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 MAB21L2Q9Y586 359 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 AP4B1Q9Y6B7 739 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 TEX264Q9Y6I9 313 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 U3KQV3 271 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 PTPRTO14522 1441 aa1.44□□□□□ -2.18
NUP54-208ENST00000508604 BLMP54132 1417 aaPredicted RBP1.44□□□□□ -2.18
NUP54-208ENST00000508604 TRAPPC8Q9Y2L5 1435 aa1.44□□□□□ -2.18
NUP54-208ENST00000508604 CFAP43Q8NDM7 1665 aa1.44□□□□□ -2.18
NUP54-208ENST00000508604 TTC37Q6PGP7 1564 aa1.44□□□□□ -2.18
NUP54-208ENST00000508604 CCDC18Q5T9S5 1454 aa1.44□□□□□ -2.18
NUP54-208ENST00000508604 SETD1AO15047 1707 aaKnown RBP1.44□□□□□ -2.18
NUP54-208ENST00000508604 KIR2DS1A0A191URI9 304 aa1.44□□□□□ -2.18
NUP54-208ENST00000508604 A0A1B0GV90 55 aa1.44□□□□□ -2.18
NUP54-208ENST00000508604 C9orf170A2RU37 121 aa1.44□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms