RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 PRPS1P60891 318 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 SNRPD2P62316 118 aaKnown RBP3.34□□□□□ -1.87
USP54-217ENST00000498213 SLC18A2Q05940 514 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 BSPH1Q075Z2 132 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 ZNF155Q12901 538 aaPredicted RBP3.34□□□□□ -1.87
USP54-217ENST00000498213 PDE7AQ13946 482 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 TSC22D1Q15714 1073 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 STK11Q15831 433 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 GSTA3Q16772 222 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 SMU1Q2TAY7 513 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 C18orf21Q32NC0 220 aaPredicted RBP3.34□□□□□ -1.87
USP54-217ENST00000498213 KLHL26Q53HC5 615 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 CASC10Q5T4H9 136 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 FAM71E1Q6IPT2 247 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 C11orf71Q6IPW1 123 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 LEG1Q6P5S2 330 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 C5orf46Q6UWT4 87 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 NPSR1Q6W5P4 371 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 C17orf107Q6ZR85 190 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 SHFQ7M4L6 423 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 BHLHA15Q7RTS1 189 aaPredicted RBP3.34□□□□□ -1.87
USP54-217ENST00000498213 GALNT10Q86SR1 603 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 SNX32Q86XE0 403 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 C1orf174Q8IYL3 243 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 UBQLNLQ8IYU4 475 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 C1orf52Q8N6N3 182 aaKnown RBP3.34□□□□□ -1.87
USP54-217ENST00000498213 EIF1ADQ8N9N8 165 aaKnown RBP3.34□□□□□ -1.87
USP54-217ENST00000498213 POMGNT2Q8NAT1 580 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 NUP37Q8NFH4 326 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 KBTBD8Q8NFY9 601 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 OR7G2Q8NG99 324 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 OR4F15Q8NGB8 312 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 OR9A2Q8NGT5 310 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 OR5W2Q8NH69 310 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 METTL6Q8TCB7 284 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 FBXO25Q8TCJ0 367 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 SFXN5Q8TD22 340 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 C16orf78Q8WTQ4 265 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 KCTD4Q8WVF5 259 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 SECTM1Q8WVN6 248 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 IFT81Q8WYA0 676 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 C22orf15Q8WYQ4 148 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP3.34□□□□□ -1.87
USP54-217ENST00000498213 CNOT9Q92600 299 aaKnown RBP3.34□□□□□ -1.87
USP54-217ENST00000498213 GTF3AQ92664 365 aaKnown RBP3.34□□□□□ -1.87
USP54-217ENST00000498213 SLC35B4Q969S0 331 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 ESAMQ96AP7 390 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 TMEM45BQ96B21 275 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 APH1AQ96BI3 265 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 EFHD2Q96C19 240 aaPredicted RBP3.34□□□□□ -1.87
USP54-217ENST00000498213 AMDHD1Q96NU7 426 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 ANKRD27Q96NW4 1050 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 KATNB1Q9BVA0 655 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 RAB1BQ9H0U4 201 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 PIGUQ9H490 435 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 ZNF442Q9H7R0 627 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 CAB39LQ9H9S4 337 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 DCDC2Q9UHG0 476 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 PCDHGB4Q9UN71 923 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 SLC35A3Q9Y2D2 325 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 SLC9A8Q9Y2E8 581 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 EML6Q6ZMW3 1958 aa3.34□□□□□ -1.88
USP54-217ENST00000498213 ABCA13Q86UQ4 5058 aa3.34□□□□□ -1.88
USP54-217ENST00000498213 PPIAL4EA0A075B759 164 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 ARPC4-TTLL3A0A0A6YYG9 625 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 PPIAL4CA0A0B4J2A2 164 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 hDV102S1A0JD36 115 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 MAGEA13PA6NCF6 341 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 DPRXA6NFQ7 191 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 B4DSR2 109 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 PPIAL4DF5H284 164 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 J3QLI3 93 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 ZNF195O14628 629 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 ABCD4O14678 606 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 ZNF264O43296 627 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 SCO2O43819 266 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 CXCL13O43927 109 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 PEX14O75381 377 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 MRPL33O75394 65 aaKnown RBP3.33□□□□□ -1.88
USP54-217ENST00000498213 SUPT7LO94864 414 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 KCNK2O95069 426 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 OXSR1O95747 527 aaPredicted RBP3.33□□□□□ -1.88
USP54-217ENST00000498213 CRYAAP02489 173 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 TFP02787 698 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 FGF4P08620 206 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 IL3P08700 152 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 PPIAL4FP0DN26 164 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 UROSP10746 265 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 PGCP20142 388 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 GABRA3P34903 492 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 PCGF2P35227 344 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 ATP12AP54707 1039 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 DNAJB13P59910 316 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 SIRPAP78324 504 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 H3F3AP84243 136 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 RASGEF1BQ0VAM2 473 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 DLG1Q12959 904 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 MAD2L1Q13257 205 aaPredicted RBP3.33□□□□□ -1.88
USP54-217ENST00000498213 GNA13Q14344 377 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 CASP8Q14790 479 aa3.33□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms