RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 LRFN4Q6PJG9 635 aa7.5□□□□□ -1.21
USP54-215ENST00000497106 WDSUB1Q8N9V3 476 aa7.5□□□□□ -1.21
USP54-215ENST00000497106 ZNF511Q8NB15 262 aa7.5□□□□□ -1.21
USP54-215ENST00000497106 OR1J2Q8NGS2 313 aa7.5□□□□□ -1.21
USP54-215ENST00000497106 OR13C3Q8NGS6 347 aa7.5□□□□□ -1.21
USP54-215ENST00000497106 OR52N5Q8NH56 324 aa7.5□□□□□ -1.21
USP54-215ENST00000497106 ARL5BQ96KC2 179 aa7.5□□□□□ -1.21
USP54-215ENST00000497106 FRMD6Q96NE9 622 aa7.5□□□□□ -1.21
USP54-215ENST00000497106 A0A075B6Q4 140 aa7.5□□□□□ -1.21
USP54-215ENST00000497106 CIB4A0PJX0 185 aa7.5□□□□□ -1.21
USP54-215ENST00000497106 SLC22A20A6NK97 555 aa7.5□□□□□ -1.21
USP54-215ENST00000497106 TBX1O43435 398 aa7.5□□□□□ -1.21
USP54-215ENST00000497106 ABOP16442 354 aa7.5□□□□□ -1.21
USP54-215ENST00000497106 CDKN2AP42771 156 aaKnown RBP7.5□□□□□ -1.21
USP54-215ENST00000497106 GAS1P54826 345 aa7.5□□□□□ -1.21
USP54-215ENST00000497106 ZNF169Q14929 603 aaPredicted RBP7.5□□□□□ -1.21
USP54-215ENST00000497106 Q499Y3 187 aa7.5□□□□□ -1.21
USP54-215ENST00000497106 CDONQ4KMG0 1287 aa7.5□□□□□ -1.21
USP54-215ENST00000497106 PYDC2Q56P42 97 aa7.5□□□□□ -1.21
USP54-215ENST00000497106 DESI1Q6ICB0 168 aa7.5□□□□□ -1.21
USP54-215ENST00000497106 ITPKCQ96DU7 683 aa7.5□□□□□ -1.21
USP54-215ENST00000497106 HDHD2Q9H0R4 259 aa7.5□□□□□ -1.21
USP54-215ENST00000497106 CCDC182A6NF36 153 aa7.5□□□□□ -1.21
USP54-215ENST00000497106 CD8B2A6NJW9 211 aa7.5□□□□□ -1.21
USP54-215ENST00000497106 DLL1O00548 723 aa7.5□□□□□ -1.21
USP54-215ENST00000497106 CD8BP10966 210 aa7.5□□□□□ -1.21
USP54-215ENST00000497106 SLC16A14Q7RTX9 510 aa7.5□□□□□ -1.21
USP54-215ENST00000497106 SMIM19Q96E16 107 aa7.5□□□□□ -1.21
USP54-215ENST00000497106 SLC30A2Q9BRI3 323 aa7.5□□□□□ -1.21
USP54-215ENST00000497106 PLEK2Q9NYT0 353 aa7.5□□□□□ -1.21
USP54-215ENST00000497106 ABRACLQ9P1F3 81 aa7.5□□□□□ -1.21
USP54-215ENST00000497106 KLHL13Q9P2N7 655 aa7.5□□□□□ -1.21
USP54-215ENST00000497106 EIF3KQ9UBQ5 218 aaKnown RBP7.5□□□□□ -1.21
USP54-215ENST00000497106 TMEM269A0A1B0GVZ9 245 aa7.5□□□□□ -1.21
USP54-215ENST00000497106 SYT7O43581 403 aa7.5□□□□□ -1.21
USP54-215ENST00000497106 NPIPB7O75200 414 aa7.5□□□□□ -1.21
USP54-215ENST00000497106 HOXD4P09016 255 aaPredicted RBP7.5□□□□□ -1.21
USP54-215ENST00000497106 OR8G3PP0DMU2 310 aa7.5□□□□□ -1.21
USP54-215ENST00000497106 SFTPCP11686 197 aa7.5□□□□□ -1.21
USP54-215ENST00000497106 TMPRSS3P57727 454 aa7.5□□□□□ -1.21
USP54-215ENST00000497106 LSM6P62312 80 aaKnown RBP7.5□□□□□ -1.21
USP54-215ENST00000497106 MRPS15P82914 257 aaKnown RBP7.5□□□□□ -1.21
USP54-215ENST00000497106 EGR4Q05215 589 aa7.5□□□□□ -1.21
USP54-215ENST00000497106 CDK5R1Q15078 307 aa7.5□□□□□ -1.21
USP54-215ENST00000497106 MEP1BQ16820 701 aa7.5□□□□□ -1.21
USP54-215ENST00000497106 CCDC36Q8IYA8 594 aa7.5□□□□□ -1.21
USP54-215ENST00000497106 OR8B4Q96RC9 309 aa7.5□□□□□ -1.21
USP54-215ENST00000497106 GPER1Q99527 375 aa7.5□□□□□ -1.21
USP54-215ENST00000497106 DEFB127Q9H1M4 99 aa7.5□□□□□ -1.21
USP54-215ENST00000497106 GP6Q9HCN6 339 aa7.5□□□□□ -1.21
USP54-215ENST00000497106 ACKR4Q9NPB9 350 aa7.5□□□□□ -1.21
USP54-215ENST00000497106 DIABLOQ9NR28 239 aa7.5□□□□□ -1.21
USP54-215ENST00000497106 TXNL4BQ9NX01 149 aaKnown RBP7.5□□□□□ -1.21
USP54-215ENST00000497106 MED29Q9NX70 200 aa7.5□□□□□ -1.21
USP54-215ENST00000497106 TAS2R16Q9NYV7 291 aa7.5□□□□□ -1.21
USP54-215ENST00000497106 TAS2R5Q9NYW4 299 aa7.5□□□□□ -1.21
USP54-215ENST00000497106 FABP12A6NFH5 140 aa7.49□□□□□ -1.21
USP54-215ENST00000497106 VSTM5A8MXK1 200 aa7.49□□□□□ -1.21
USP54-215ENST00000497106 SHISA8B8ZZ34 492 aa7.49□□□□□ -1.21
USP54-215ENST00000497106 CYB5AP00167 134 aa7.49□□□□□ -1.21
USP54-215ENST00000497106 UCHL1P09936 223 aa7.49□□□□□ -1.21
USP54-215ENST00000497106 GABRA1P14867 456 aa7.49□□□□□ -1.21
USP54-215ENST00000497106 APLNRP35414 380 aa7.49□□□□□ -1.21
USP54-215ENST00000497106 FAUP35544 74 aaKnown RBP7.49□□□□□ -1.21
USP54-215ENST00000497106 ARR3P36575 388 aa7.49□□□□□ -1.21
USP54-215ENST00000497106 AGFG1P52594 562 aaKnown RBP7.49□□□□□ -1.21
USP54-215ENST00000497106 AQP6Q13520 282 aa7.49□□□□□ -1.21
USP54-215ENST00000497106 SLC17A1Q14916 467 aa7.49□□□□□ -1.21
USP54-215ENST00000497106 SPATC1Q76KD6 591 aa7.49□□□□□ -1.21
USP54-215ENST00000497106 ZC3HAV1Q7Z2W4 902 aaKnown RBP7.49□□□□□ -1.21
USP54-215ENST00000497106 PNPLA5Q7Z6Z6 429 aaPredicted RBP7.49□□□□□ -1.21
USP54-215ENST00000497106 ZFP41Q8N8Y5 198 aa7.49□□□□□ -1.21
USP54-215ENST00000497106 RNF138Q8WVD3 245 aa7.49□□□□□ -1.21
USP54-215ENST00000497106 SMAD5Q99717 465 aaKnown RBP7.49□□□□□ -1.21
USP54-215ENST00000497106 PTDSS2Q9BVG9 487 aa7.49□□□□□ -1.21
USP54-215ENST00000497106 TTTY10Q9BZA0 68 aa7.49□□□□□ -1.21
USP54-215ENST00000497106 DAPK2Q9UIK4 370 aa7.49□□□□□ -1.21
USP54-215ENST00000497106 H3BUI4 141 aa7.49□□□□□ -1.21
USP54-215ENST00000497106 NKX2-8O15522 239 aa7.49□□□□□ -1.21
USP54-215ENST00000497106 GSTT2P0CG29 244 aa7.49□□□□□ -1.21
USP54-215ENST00000497106 GSTT2BP0CG30 244 aa7.49□□□□□ -1.21
USP54-215ENST00000497106 LIMS3P0CW19 117 aa7.49□□□□□ -1.21
USP54-215ENST00000497106 LIMS4P0CW20 117 aa7.49□□□□□ -1.21
USP54-215ENST00000497106 CCR9P51686 369 aa7.49□□□□□ -1.21
USP54-215ENST00000497106 RPS25P62851 125 aaKnown RBP7.49□□□□□ -1.21
USP54-215ENST00000497106 SCN1BQ07699 218 aa7.49□□□□□ -1.21
USP54-215ENST00000497106 XKRXQ6PP77 449 aa7.49□□□□□ -1.21
USP54-215ENST00000497106 DCXRQ7Z4W1 244 aa7.49□□□□□ -1.21
USP54-215ENST00000497106 ABHD4Q8TB40 342 aa7.49□□□□□ -1.21
USP54-215ENST00000497106 NDNFQ8TB73 568 aa7.49□□□□□ -1.21
USP54-215ENST00000497106 PCDH15Q96QU1 1955 aa7.49□□□□□ -1.21
USP54-215ENST00000497106 CCDC32Q9BV29 185 aa7.49□□□□□ -1.21
USP54-215ENST00000497106 NELFAQ9H3P2 528 aa7.49□□□□□ -1.21
USP54-215ENST00000497106 TIMM10BQ9Y5J6 103 aa7.49□□□□□ -1.21
USP54-215ENST00000497106 R4GMQ9 66 aa7.49□□□□□ -1.21
USP54-215ENST00000497106 ATE1O95260 518 aa7.49□□□□□ -1.21
USP54-215ENST00000497106 CD40LGP29965 261 aa7.49□□□□□ -1.21
USP54-215ENST00000497106 FGF9P31371 208 aaPredicted RBP7.49□□□□□ -1.21
USP54-215ENST00000497106 LSM11P83369 360 aaKnown RBP eCLIP7.49□□□□□ -1.21
USP54-215ENST00000497106 TAB1Q15750 504 aa7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms