RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 CSO75390 466 aaKnown RBP12.05□□□□□ -0.48
PTPRF-215ENST00000496447 IGLV3-25P01717 112 aa12.05□□□□□ -0.48
PTPRF-215ENST00000496447 SELEP16581 610 aa12.05□□□□□ -0.48
PTPRF-215ENST00000496447 RPS25P62851 125 aaKnown RBP12.05□□□□□ -0.48
PTPRF-215ENST00000496447 RUNX2Q13950 521 aa12.05□□□□□ -0.48
PTPRF-215ENST00000496447 CD276Q5ZPR3 534 aa12.05□□□□□ -0.48
PTPRF-215ENST00000496447 HRASLS5Q96KN8 279 aa12.05□□□□□ -0.48
PTPRF-215ENST00000496447 NMNAT2Q9BZQ4 307 aa12.05□□□□□ -0.48
PTPRF-215ENST00000496447 CHST11Q9NPF2 352 aa12.05□□□□□ -0.48
PTPRF-215ENST00000496447 MDFIC2A0A1B0GVS7 189 aa12.05□□□□□ -0.48
PTPRF-215ENST00000496447 SPINT2O43291 252 aa12.05□□□□□ -0.48
PTPRF-215ENST00000496447 OLFM2O95897 454 aa12.05□□□□□ -0.48
PTPRF-215ENST00000496447 SNRPBP14678 240 aaKnown RBP12.05□□□□□ -0.48
PTPRF-215ENST00000496447 ARNTP27540 789 aa12.05□□□□□ -0.48
PTPRF-215ENST00000496447 ARHGAP11BQ3KRB8 267 aa12.05□□□□□ -0.48
PTPRF-215ENST00000496447 TOR2AQ5JU69 321 aa12.05□□□□□ -0.48
PTPRF-215ENST00000496447 APOOLQ6UXV4 268 aa12.05□□□□□ -0.48
PTPRF-215ENST00000496447 LSMEM1Q8N8F7 131 aa12.05□□□□□ -0.48
PTPRF-215ENST00000496447 MVB12AQ96EY5 273 aa12.05□□□□□ -0.48
PTPRF-215ENST00000496447 SLC35A4Q96G79 324 aa12.05□□□□□ -0.48
PTPRF-215ENST00000496447 SEMA4GQ9NTN9 838 aa12.05□□□□□ -0.48
PTPRF-215ENST00000496447 KIF25Q9UIL4 384 aa12.05□□□□□ -0.48
PTPRF-215ENST00000496447 PRELID3BQ9Y3B1 194 aa12.05□□□□□ -0.48
PTPRF-215ENST00000496447 RGS11O94810 467 aa12.04□□□□□ -0.48
PTPRF-215ENST00000496447 CTSLP07711 333 aa12.04□□□□□ -0.48
PTPRF-215ENST00000496447 ZNF93P35789 620 aaPredicted RBP12.04□□□□□ -0.48
PTPRF-215ENST00000496447 BTG2P78543 158 aa12.04□□□□□ -0.48
PTPRF-215ENST00000496447 CAMK2BQ13554 666 aa12.04□□□□□ -0.48
PTPRF-215ENST00000496447 FCN2Q15485 313 aa12.04□□□□□ -0.48
PTPRF-215ENST00000496447 SLC35D3Q5M8T2 416 aa12.04□□□□□ -0.48
PTPRF-215ENST00000496447 LAX1Q8IWV1 398 aa12.04□□□□□ -0.48
PTPRF-215ENST00000496447 OR52A5Q9H2C5 316 aa12.04□□□□□ -0.48
PTPRF-215ENST00000496447 MYO10Q9HD67 2058 aa12.04□□□□□ -0.48
PTPRF-215ENST00000496447 GLCEO94923 617 aa12.04□□□□□ -0.48
PTPRF-215ENST00000496447 CPT2P23786 658 aa12.04□□□□□ -0.48
PTPRF-215ENST00000496447 PRTGQ2VWP7 1150 aa12.04□□□□□ -0.48
PTPRF-215ENST00000496447 C9orf152Q5JTZ5 239 aa12.04□□□□□ -0.48
PTPRF-215ENST00000496447 DPPA2Q7Z7J5 298 aa12.04□□□□□ -0.48
PTPRF-215ENST00000496447 EMG1Q92979 244 aaKnown RBP12.04□□□□□ -0.48
PTPRF-215ENST00000496447 CCDC187A0A096LP49 1063 aa12.04□□□□□ -0.48
PTPRF-215ENST00000496447 TSPAN11A1L157 253 aa12.04□□□□□ -0.48
PTPRF-215ENST00000496447 SBK2P0C263 348 aa12.04□□□□□ -0.48
PTPRF-215ENST00000496447 NFYBP25208 207 aa12.04□□□□□ -0.48
PTPRF-215ENST00000496447 PTBP1P26599 531 aaKnown RBP eCLIP12.04□□□□□ -0.484e-7■■■■□ 23.8
PTPRF-215ENST00000496447 CCL7P80098 99 aa12.04□□□□□ -0.48
PTPRF-215ENST00000496447 KANSL1Q7Z3B3 1105 aa12.04□□□□□ -0.48
PTPRF-215ENST00000496447 SYT9Q86SS6 491 aa12.04□□□□□ -0.48
PTPRF-215ENST00000496447 OR5AS1Q8N127 324 aa12.04□□□□□ -0.48
PTPRF-215ENST00000496447 Q96M85 177 aa12.04□□□□□ -0.48
PTPRF-215ENST00000496447 TSSK2Q96PF2 358 aa12.04□□□□□ -0.48
PTPRF-215ENST00000496447 EMC6Q9BV81 110 aa12.04□□□□□ -0.48
PTPRF-215ENST00000496447 BARHL1Q9BZE3 327 aa12.04□□□□□ -0.48
PTPRF-215ENST00000496447 TMEM30AQ9NV96 361 aa12.04□□□□□ -0.48
PTPRF-215ENST00000496447 GMPR2Q9P2T1 348 aaKnown RBP12.04□□□□□ -0.48
PTPRF-215ENST00000496447 ANKRD36CQ5JPF3 1778 aa12.04□□□□□ -0.48
PTPRF-215ENST00000496447 C4orf47A7E2U8 309 aa12.04□□□□□ -0.48
PTPRF-215ENST00000496447 ZNF891A8MT65 544 aaPredicted RBP12.04□□□□□ -0.48
PTPRF-215ENST00000496447 H7C1Q1 480 aa12.04□□□□□ -0.48
PTPRF-215ENST00000496447 NDUFB7P17568 137 aa12.04□□□□□ -0.48
PTPRF-215ENST00000496447 RPL34P49207 117 aaKnown RBP12.04□□□□□ -0.48
PTPRF-215ENST00000496447 HSF1Q00613 529 aa12.04□□□□□ -0.48
PTPRF-215ENST00000496447 ASAH1Q13510 395 aa12.04□□□□□ -0.48
PTPRF-215ENST00000496447 SAXO2Q658L1 398 aa12.04□□□□□ -0.48
PTPRF-215ENST00000496447 ZNF546Q86UE3 836 aa12.04□□□□□ -0.48
PTPRF-215ENST00000496447 FAM71CQ8NEG0 241 aa12.04□□□□□ -0.48
PTPRF-215ENST00000496447 PCDHGA5Q9Y5G8 931 aa12.04□□□□□ -0.48
PTPRF-215ENST00000496447 SELENOFO60613 162 aa12.04□□□□□ -0.48
PTPRF-215ENST00000496447 CEACAM5P06731 702 aa12.04□□□□□ -0.48
PTPRF-215ENST00000496447 GPX2P18283 190 aa12.04□□□□□ -0.48
PTPRF-215ENST00000496447 GABRG2P18507 467 aa12.04□□□□□ -0.48
PTPRF-215ENST00000496447 PPICP45877 212 aa12.04□□□□□ -0.48
PTPRF-215ENST00000496447 OTUD1Q5VV17 481 aaPredicted RBP12.04□□□□□ -0.48
PTPRF-215ENST00000496447 KCTD12Q96CX2 325 aaKnown RBP12.04□□□□□ -0.48
PTPRF-215ENST00000496447 OR14A2Q96R54 314 aa12.04□□□□□ -0.48
PTPRF-215ENST00000496447 SDF2Q99470 211 aa12.04□□□□□ -0.48
PTPRF-215ENST00000496447 RTL8AQ9BWD3 113 aa12.04□□□□□ -0.48
PTPRF-215ENST00000496447 MUTYHQ9UIF7 546 aa12.04□□□□□ -0.48
PTPRF-215ENST00000496447 SNX11Q9Y5W9 270 aa12.04□□□□□ -0.48
PTPRF-215ENST00000496447 BTBD17A6NE02 478 aa12.03□□□□□ -0.48
PTPRF-215ENST00000496447 ZGLP1P0C6A0 271 aa12.03□□□□□ -0.48
PTPRF-215ENST00000496447 TEAD1P28347 426 aa12.03□□□□□ -0.48
PTPRF-215ENST00000496447 S100A11P31949 105 aa12.03□□□□□ -0.48
PTPRF-215ENST00000496447 MAP2K6P52564 334 aa12.03□□□□□ -0.48
PTPRF-215ENST00000496447 SELENBP1Q13228 472 aa12.03□□□□□ -0.48
PTPRF-215ENST00000496447 WFDC8Q8IUA0 241 aa12.03□□□□□ -0.48
PTPRF-215ENST00000496447 EXD3Q8N9H8 876 aa12.03□□□□□ -0.48
PTPRF-215ENST00000496447 SUMF2Q8NBJ7 301 aa12.03□□□□□ -0.48
PTPRF-215ENST00000496447 TGIF2Q9GZN2 237 aa12.03□□□□□ -0.48
PTPRF-215ENST00000496447 C19orf12Q9NSK7 152 aa12.03□□□□□ -0.48
PTPRF-215ENST00000496447 MN1Q10571 1320 aaPredicted RBP12.03□□□□□ -0.48
PTPRF-215ENST00000496447 ITGB4P16144 1822 aa12.03□□□□□ -0.48
PTPRF-215ENST00000496447 MYO18AQ92614 2054 aaKnown RBP12.03□□□□□ -0.48
PTPRF-215ENST00000496447 MYF5P13349 255 aa12.03□□□□□ -0.48
PTPRF-215ENST00000496447 TEKQ02763 1124 aa12.03□□□□□ -0.48
PTPRF-215ENST00000496447 ACVR1Q04771 509 aa12.03□□□□□ -0.48
PTPRF-215ENST00000496447 OR8G1Q15617 311 aa12.03□□□□□ -0.48
PTPRF-215ENST00000496447 PLK5Q496M5 336 aa12.03□□□□□ -0.48
PTPRF-215ENST00000496447 ZMAT1Q5H9K5 638 aa12.03□□□□□ -0.48
PTPRF-215ENST00000496447 HEPHL1Q6MZM0 1159 aa12.03□□□□□ -0.48
PTPRF-215ENST00000496447 ISL2Q96A47 359 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms