RNA–Protein interactions for RNA: ENST00000489741.1

PRPF40A-210, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 3

Gene PRPF40A, Length 776 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-210ENST00000489741 SRSF4Q08170 494 aaKnown RBP5.47□□□□□ -1.53
PRPF40A-210ENST00000489741 GGTLC2Q14390 218 aa5.47□□□□□ -1.53
PRPF40A-210ENST00000489741 SQLEQ14534 574 aa5.47□□□□□ -1.53
PRPF40A-210ENST00000489741 MS4A18Q3C1V0 323 aa5.47□□□□□ -1.53
PRPF40A-210ENST00000489741 PRAMEF8Q5VWM4 474 aa5.47□□□□□ -1.53
PRPF40A-210ENST00000489741 PRAMEF7Q5VXH5 474 aa5.47□□□□□ -1.53
PRPF40A-210ENST00000489741 NIPAL3Q6P499 406 aa5.47□□□□□ -1.53
PRPF40A-210ENST00000489741 KLHL24Q6TFL4 600 aa5.47□□□□□ -1.53
PRPF40A-210ENST00000489741 IL17RELQ6ZVW7 336 aa5.47□□□□□ -1.53
PRPF40A-210ENST00000489741 SERPINA11Q86U17 422 aa5.47□□□□□ -1.53
PRPF40A-210ENST00000489741 GPAT4Q86UL3 456 aa5.47□□□□□ -1.53
PRPF40A-210ENST00000489741 CCDC36Q8IYA8 594 aa5.47□□□□□ -1.53
PRPF40A-210ENST00000489741 TMEM123Q8N131 208 aa5.47□□□□□ -1.53
PRPF40A-210ENST00000489741 ZCCHC24Q8N2G6 241 aaKnown RBP5.47□□□□□ -1.53
PRPF40A-210ENST00000489741 KDM8Q8N371 416 aa5.47□□□□□ -1.53
PRPF40A-210ENST00000489741 ZNF786Q8N393 782 aa5.47□□□□□ -1.53
PRPF40A-210ENST00000489741 CADM2Q8N3J6 435 aa5.47□□□□□ -1.53
PRPF40A-210ENST00000489741 LSMEM1Q8N8F7 131 aa5.47□□□□□ -1.53
PRPF40A-210ENST00000489741 PNPT1Q8TCS8 783 aaKnown RBP5.47□□□□□ -1.53
PRPF40A-210ENST00000489741 VPS33AQ96AX1 596 aa5.47□□□□□ -1.53
PRPF40A-210ENST00000489741 KTI12Q96EK9 354 aaPredicted RBP5.47□□□□□ -1.53
PRPF40A-210ENST00000489741 SLC41A3Q96GZ6 507 aa5.47□□□□□ -1.53
PRPF40A-210ENST00000489741 OXGR1Q96P68 337 aa5.47□□□□□ -1.53
PRPF40A-210ENST00000489741 TAPBPLQ9BX59 468 aa5.47□□□□□ -1.53
PRPF40A-210ENST00000489741 WDR55Q9H6Y2 383 aaPredicted RBP5.47□□□□□ -1.53
PRPF40A-210ENST00000489741 TPT1P8Q9HAU6 139 aa5.47□□□□□ -1.53
PRPF40A-210ENST00000489741 C12orf10Q9HB07 376 aa5.47□□□□□ -1.53
PRPF40A-210ENST00000489741 SDR39U1Q9NRG7 319 aaPredicted RBP5.47□□□□□ -1.53
PRPF40A-210ENST00000489741 ADPRHL2Q9NX46 363 aa5.47□□□□□ -1.53
PRPF40A-210ENST00000489741 THUMPD1Q9NXG2 353 aaKnown RBP5.47□□□□□ -1.53
PRPF40A-210ENST00000489741 B3GNT2Q9NY97 397 aa5.47□□□□□ -1.53
PRPF40A-210ENST00000489741 P2RX2Q9UBL9 471 aa5.47□□□□□ -1.53
PRPF40A-210ENST00000489741 RCE1Q9Y256 329 aa5.47□□□□□ -1.53
PRPF40A-210ENST00000489741 ZNF443Q9Y2A4 671 aaPredicted RBP5.47□□□□□ -1.53
PRPF40A-210ENST00000489741 IFT52Q9Y366 437 aa5.47□□□□□ -1.53
PRPF40A-210ENST00000489741 GMEB1Q9Y692 573 aa5.47□□□□□ -1.53
PRPF40A-210ENST00000489741 HEATR1Q9H583 2144 aaKnown RBP5.47□□□□□ -1.53
PRPF40A-210ENST00000489741 IGKV1D-42A0A075B6H8 117 aa5.46□□□□□ -1.54
PRPF40A-210ENST00000489741 A0A1W2PPL8 197 aa5.46□□□□□ -1.54
PRPF40A-210ENST00000489741 LRP5LA4QPB2 252 aa5.46□□□□□ -1.54
PRPF40A-210ENST00000489741 TRPC5OSA6NMA1 111 aa5.46□□□□□ -1.54
PRPF40A-210ENST00000489741 hCG_2039718K7EN88 272 aa5.46□□□□□ -1.54
PRPF40A-210ENST00000489741 RGS16O15492 202 aaPredicted RBP5.46□□□□□ -1.54
PRPF40A-210ENST00000489741 TRAF3IP2O43734 574 aaPredicted RBP5.46□□□□□ -1.54
PRPF40A-210ENST00000489741 OR2T1O43869 369 aa5.46□□□□□ -1.54
PRPF40A-210ENST00000489741 SLC22A3O75751 556 aa5.46□□□□□ -1.54
PRPF40A-210ENST00000489741 KRT33AO76009 404 aa5.46□□□□□ -1.54
PRPF40A-210ENST00000489741 IL6RP08887 468 aaPredicted RBP5.46□□□□□ -1.54
PRPF40A-210ENST00000489741 ZNF35P13682 527 aa5.46□□□□□ -1.54
PRPF40A-210ENST00000489741 DAOP14920 347 aa5.46□□□□□ -1.54
PRPF40A-210ENST00000489741 ZNF43P17038 809 aa5.46□□□□□ -1.54
PRPF40A-210ENST00000489741 NPR2P20594 1047 aa5.46□□□□□ -1.54
PRPF40A-210ENST00000489741 LIPAP38571 399 aa5.46□□□□□ -1.54
PRPF40A-210ENST00000489741 EVX1P49640 407 aa5.46□□□□□ -1.54
PRPF40A-210ENST00000489741 CLDN17P56750 224 aa5.46□□□□□ -1.54
PRPF40A-210ENST00000489741 DSTNP60981 165 aa5.46□□□□□ -1.54
PRPF40A-210ENST00000489741 UBE2NP61088 152 aaKnown RBP5.46□□□□□ -1.54
PRPF40A-210ENST00000489741 TUBA1BP68363 451 aa5.46□□□□□ -1.54
PRPF40A-210ENST00000489741 TUBA4AP68366 448 aa5.46□□□□□ -1.54
PRPF40A-210ENST00000489741 HOXC5Q00444 222 aa5.46□□□□□ -1.54
PRPF40A-210ENST00000489741 LARS2Q15031 903 aaKnown RBP5.46□□□□□ -1.54
PRPF40A-210ENST00000489741 RGNQ15493 299 aa5.46□□□□□ -1.54
PRPF40A-210ENST00000489741 KRT71Q3SY84 523 aa5.46□□□□□ -1.54
PRPF40A-210ENST00000489741 GTDC1Q4AE62 458 aa5.46□□□□□ -1.54
PRPF40A-210ENST00000489741 IQCCQ4KMZ1 466 aa5.46□□□□□ -1.54
PRPF40A-210ENST00000489741 PHYHD1Q5SRE7 291 aa5.46□□□□□ -1.54
PRPF40A-210ENST00000489741 DEF8Q6ZN54 512 aa5.46□□□□□ -1.54
PRPF40A-210ENST00000489741 MSANTD1Q6ZTZ1 278 aa5.46□□□□□ -1.54
PRPF40A-210ENST00000489741 TUBA1AQ71U36 451 aa5.46□□□□□ -1.54
PRPF40A-210ENST00000489741 H1FNTQ75WM6 255 aaPredicted RBP5.46□□□□□ -1.54
PRPF40A-210ENST00000489741 SLC46A3Q7Z3Q1 461 aa5.46□□□□□ -1.54
PRPF40A-210ENST00000489741 NET1Q7Z628 596 aaPredicted RBP5.46□□□□□ -1.54
PRPF40A-210ENST00000489741 COMTD1Q86VU5 262 aa5.46□□□□□ -1.54
PRPF40A-210ENST00000489741 WDFY1Q8IWB7 410 aa5.46□□□□□ -1.54
PRPF40A-210ENST00000489741 RFLNBQ8N5W9 214 aa5.46□□□□□ -1.54
PRPF40A-210ENST00000489741 ZBTB34Q8NCN2 500 aa5.46□□□□□ -1.54
PRPF40A-210ENST00000489741 ADPRHL1Q8NDY3 354 aa5.46□□□□□ -1.54
PRPF40A-210ENST00000489741 OR6S1Q8NH40 331 aa5.46□□□□□ -1.54
PRPF40A-210ENST00000489741 PPP1R35Q8TAP8 253 aa5.46□□□□□ -1.54
PRPF40A-210ENST00000489741 GTF2H4Q92759 462 aa5.46□□□□□ -1.54
PRPF40A-210ENST00000489741 TAAR8Q969N4 342 aa5.46□□□□□ -1.54
PRPF40A-210ENST00000489741 TMEM19Q96HH6 336 aa5.46□□□□□ -1.54
PRPF40A-210ENST00000489741 LRR1Q96L50 414 aa5.46□□□□□ -1.54
PRPF40A-210ENST00000489741 ANKRD27Q96NW4 1050 aa5.46□□□□□ -1.54
PRPF40A-210ENST00000489741 ALKBH3Q96Q83 286 aaPredicted RBP5.46□□□□□ -1.54
PRPF40A-210ENST00000489741 OR2M2Q96R28 347 aa5.46□□□□□ -1.54
PRPF40A-210ENST00000489741 KCNS3Q9BQ31 491 aa5.46□□□□□ -1.54
PRPF40A-210ENST00000489741 PAIP1Q9H074 479 aaKnown RBP5.46□□□□□ -1.54
PRPF40A-210ENST00000489741 RACGAP1Q9H0H5 632 aa5.46□□□□□ -1.54
PRPF40A-210ENST00000489741 RAB1BQ9H0U4 201 aa5.46□□□□□ -1.54
PRPF40A-210ENST00000489741 CHODLQ9H9P2 273 aa5.46□□□□□ -1.54
PRPF40A-210ENST00000489741 A4GALTQ9NPC4 353 aa5.46□□□□□ -1.54
PRPF40A-210ENST00000489741 SLC52A3Q9NQ40 469 aa5.46□□□□□ -1.54
PRPF40A-210ENST00000489741 THAP1Q9NVV9 213 aa5.46□□□□□ -1.54
PRPF40A-210ENST00000489741 SEC14L4Q9UDX3 406 aa5.46□□□□□ -1.54
PRPF40A-210ENST00000489741 MEGF8Q7Z7M0 2845 aa5.46□□□□□ -1.54
PRPF40A-210ENST00000489741 A0A1B0GWA3 101 aa5.45□□□□□ -1.54
PRPF40A-210ENST00000489741 ZNF99A8MXY4 864 aaPredicted RBP5.45□□□□□ -1.54
PRPF40A-210ENST00000489741 SLCO1B7G3V0H7 640 aa5.45□□□□□ -1.54
PRPF40A-210ENST00000489741 AIM2O14862 343 aa5.45□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms