RNA–Protein interactions for RNA: ENST00000476169.1

VPS13D-207, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 475 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-207ENST00000476169 CSKP41240 450 aa3.35□□□□□ -1.87
VPS13D-207ENST00000476169 CRATP43155 626 aa3.35□□□□□ -1.87
VPS13D-207ENST00000476169 TFPI2P48307 235 aa3.35□□□□□ -1.87
VPS13D-207ENST00000476169 GSK3BP49841 420 aa3.35□□□□□ -1.87
VPS13D-207ENST00000476169 RAB7AP51149 207 aa3.35□□□□□ -1.87
VPS13D-207ENST00000476169 PLTPP55058 493 aa3.35□□□□□ -1.87
VPS13D-207ENST00000476169 UCNP55089 124 aa3.35□□□□□ -1.87
VPS13D-207ENST00000476169 RPL32P62910 135 aaKnown RBP3.35□□□□□ -1.87
VPS13D-207ENST00000476169 IRX3P78415 501 aaPredicted RBP3.35□□□□□ -1.87
VPS13D-207ENST00000476169 LTB4RQ15722 352 aa3.35□□□□□ -1.87
VPS13D-207ENST00000476169 PSG3Q16557 428 aa3.35□□□□□ -1.87
VPS13D-207ENST00000476169 C17orf58Q2M2W7 97 aa3.35□□□□□ -1.87
VPS13D-207ENST00000476169 RPEL1Q2QD12 228 aa3.35□□□□□ -1.87
VPS13D-207ENST00000476169 CTRB2Q6GPI1 263 aa3.35□□□□□ -1.87
VPS13D-207ENST00000476169 UFSP1Q6NVU6 142 aa3.35□□□□□ -1.87
VPS13D-207ENST00000476169 TFAP2EQ6VUC0 442 aa3.35□□□□□ -1.87
VPS13D-207ENST00000476169 TMPRSS11AQ6ZMR5 421 aa3.35□□□□□ -1.87
VPS13D-207ENST00000476169 BHLHA9Q7RTU4 235 aa3.35□□□□□ -1.87
VPS13D-207ENST00000476169 ZNF546Q86UE3 836 aa3.35□□□□□ -1.87
VPS13D-207ENST00000476169 LHFPL3Q86UP9 236 aa3.35□□□□□ -1.87
VPS13D-207ENST00000476169 LRRC49Q8IUZ0 686 aa3.35□□□□□ -1.87
VPS13D-207ENST00000476169 C9orf40Q8IXQ3 194 aa3.35□□□□□ -1.87
VPS13D-207ENST00000476169 KLHDC8BQ8IXV7 354 aa3.35□□□□□ -1.87
VPS13D-207ENST00000476169 C17orf78Q8N4C9 275 aa3.35□□□□□ -1.87
VPS13D-207ENST00000476169 SNX31Q8N9S9 440 aa3.35□□□□□ -1.87
VPS13D-207ENST00000476169 NUBPLQ8TB37 319 aa3.35□□□□□ -1.87
VPS13D-207ENST00000476169 CDKL2Q92772 493 aa3.35□□□□□ -1.87
VPS13D-207ENST00000476169 ITFG2Q969R8 447 aa3.35□□□□□ -1.87
VPS13D-207ENST00000476169 EEF1AKMT3Q96AZ1 226 aa3.35□□□□□ -1.87
VPS13D-207ENST00000476169 MED8Q96G25 268 aa3.35□□□□□ -1.87
VPS13D-207ENST00000476169 KLHDC3Q9BQ90 382 aa3.35□□□□□ -1.87
VPS13D-207ENST00000476169 CHCHD5Q9BSY4 110 aa3.35□□□□□ -1.87
VPS13D-207ENST00000476169 STMN3Q9NZ72 180 aa3.35□□□□□ -1.87
VPS13D-207ENST00000476169 TREM2Q9NZC2 230 aa3.35□□□□□ -1.87
VPS13D-207ENST00000476169 OR1A1Q9P1Q5 309 aa3.35□□□□□ -1.87
VPS13D-207ENST00000476169 LGALS13Q9UHV8 139 aa3.35□□□□□ -1.87
VPS13D-207ENST00000476169 ADGRA3Q8IWK6 1321 aa3.35□□□□□ -1.87
VPS13D-207ENST00000476169 MYO3BQ8WXR4 1341 aa3.35□□□□□ -1.87
VPS13D-207ENST00000476169 FRMPD3Q5JV73 1810 aa3.35□□□□□ -1.87
VPS13D-207ENST00000476169 UHRF1BP1Q6BDS2 1440 aa3.35□□□□□ -1.87
VPS13D-207ENST00000476169 CNTLNQ9NXG0 1405 aa3.35□□□□□ -1.87
VPS13D-207ENST00000476169 ANKRD50Q9ULJ7 1429 aa3.35□□□□□ -1.87
VPS13D-207ENST00000476169 ABCC3O15438 1527 aa3.34□□□□□ -1.87
VPS13D-207ENST00000476169 PRDM15P57071 1507 aaPredicted RBP3.34□□□□□ -1.87
VPS13D-207ENST00000476169 REREQ9P2R6 1566 aa3.34□□□□□ -1.87
VPS13D-207ENST00000476169 INO80Q9ULG1 1556 aaPredicted RBP3.34□□□□□ -1.87
VPS13D-207ENST00000476169 FER1L5A0AVI2 2057 aa3.34□□□□□ -1.87
VPS13D-207ENST00000476169 C1orf232A0A0U1RR37 186 aa3.34□□□□□ -1.87
VPS13D-207ENST00000476169 A0A1W2PQ72 361 aa3.34□□□□□ -1.87
VPS13D-207ENST00000476169 PSMB11A5LHX3 300 aa3.34□□□□□ -1.87
VPS13D-207ENST00000476169 SLC22A20A6NK97 555 aa3.34□□□□□ -1.87
VPS13D-207ENST00000476169 RPL37AP8A6NKH3 93 aa3.34□□□□□ -1.87
VPS13D-207ENST00000476169 LYRM9A8MSI8 78 aa3.34□□□□□ -1.87
VPS13D-207ENST00000476169 A8MXK9 166 aa3.34□□□□□ -1.87
VPS13D-207ENST00000476169 E9PAM4 449 aa3.34□□□□□ -1.87
VPS13D-207ENST00000476169 SLC17A2O00624 439 aa3.34□□□□□ -1.87
VPS13D-207ENST00000476169 SC5DO75845 299 aa3.34□□□□□ -1.87
VPS13D-207ENST00000476169 PLEKHA8P1O95397 391 aa3.34□□□□□ -1.87
VPS13D-207ENST00000476169 SEMA4FO95754 770 aa3.34□□□□□ -1.87
VPS13D-207ENST00000476169 IGLV1-44P01699 117 aa3.34□□□□□ -1.87
VPS13D-207ENST00000476169 CALM1P0DP23 149 aa3.34□□□□□ -1.87
VPS13D-207ENST00000476169 CALM2P0DP24 149 aa3.34□□□□□ -1.87
VPS13D-207ENST00000476169 CALM3P0DP25 149 aa3.34□□□□□ -1.87
VPS13D-207ENST00000476169 ZNF250P15622 560 aa3.34□□□□□ -1.87
VPS13D-207ENST00000476169 TBPP20226 339 aa3.34□□□□□ -1.87
VPS13D-207ENST00000476169 BGNP21810 368 aa3.34□□□□□ -1.87
VPS13D-207ENST00000476169 ARR3P36575 388 aa3.34□□□□□ -1.87
VPS13D-207ENST00000476169 CSNK1A1P48729 337 aa3.34□□□□□ -1.87
VPS13D-207ENST00000476169 SP4Q02446 784 aa3.34□□□□□ -1.87
VPS13D-207ENST00000476169 PDIA2Q13087 525 aaKnown RBP3.34□□□□□ -1.87
VPS13D-207ENST00000476169 CALCOCO2Q13137 446 aa3.34□□□□□ -1.87
VPS13D-207ENST00000476169 CYLC2Q14093 348 aaPredicted RBP3.34□□□□□ -1.87
VPS13D-207ENST00000476169 NDUFAF6Q330K2 333 aa3.34□□□□□ -1.87
VPS13D-207ENST00000476169 ZFP69Q49AA0 526 aa3.34□□□□□ -1.87
VPS13D-207ENST00000476169 PAGE2BQ5JRK9 111 aa3.34□□□□□ -1.87
VPS13D-207ENST00000476169 CLEC6AQ6EIG7 209 aa3.34□□□□□ -1.87
VPS13D-207ENST00000476169 OR5M10Q6IEU7 315 aa3.34□□□□□ -1.87
VPS13D-207ENST00000476169 NOTCH2NLQ7Z3S9 236 aa3.34□□□□□ -1.87
VPS13D-207ENST00000476169 OR2W3Q7Z3T1 314 aa3.34□□□□□ -1.87
VPS13D-207ENST00000476169 SYS1Q8N2H4 156 aa3.34□□□□□ -1.87
VPS13D-207ENST00000476169 KIF2BQ8N4N8 673 aa3.34□□□□□ -1.87
VPS13D-207ENST00000476169 ZNF557Q8N988 423 aaPredicted RBP3.34□□□□□ -1.87
VPS13D-207ENST00000476169 OR7G1Q8NGA0 311 aa3.34□□□□□ -1.87
VPS13D-207ENST00000476169 OR51F2Q8NH61 342 aa3.34□□□□□ -1.87
VPS13D-207ENST00000476169 NPRL2Q8WTW4 380 aa3.34□□□□□ -1.87
VPS13D-207ENST00000476169 BAALCQ8WXS3 180 aa3.34□□□□□ -1.87
VPS13D-207ENST00000476169 GTF2H4Q92759 462 aa3.34□□□□□ -1.87
VPS13D-207ENST00000476169 CPB2Q96IY4 423 aa3.34□□□□□ -1.87
VPS13D-207ENST00000476169 ZNF396Q96N95 335 aaPredicted RBP3.34□□□□□ -1.87
VPS13D-207ENST00000476169 ALS2CR12Q96Q35 445 aa3.34□□□□□ -1.87
VPS13D-207ENST00000476169 LITAFQ99732 161 aa3.34□□□□□ -1.87
VPS13D-207ENST00000476169 ATF6BQ99941 703 aa3.34□□□□□ -1.87
VPS13D-207ENST00000476169 CNPY3Q9BT09 278 aa3.34□□□□□ -1.87
VPS13D-207ENST00000476169 BEX2Q9BXY8 128 aa3.34□□□□□ -1.87
VPS13D-207ENST00000476169 DRC3Q9H069 523 aa3.34□□□□□ -1.87
VPS13D-207ENST00000476169 ARMC7Q9H6L4 198 aa3.34□□□□□ -1.87
VPS13D-207ENST00000476169 ZNF696Q9H7X3 374 aa3.34□□□□□ -1.87
VPS13D-207ENST00000476169 JPT2Q9H910 190 aa3.34□□□□□ -1.87
VPS13D-207ENST00000476169 ISG20L2Q9H9L3 353 aaKnown RBP3.34□□□□□ -1.87
VPS13D-207ENST00000476169 PATZ1Q9HBE1 687 aaKnown RBP3.34□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms