RNA–Protein interactions for RNA: ENST00000462482.1

SKA3-204, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-204ENST00000462482 ZNF426Q9BUY5 554 aa13.14□□□□□ -0.31
SKA3-204ENST00000462482 RBM4Q9BWF3 364 aaKnown RBP13.14□□□□□ -0.31
SKA3-204ENST00000462482 POLR2J2Q9GZM3 115 aaKnown RBP13.14□□□□□ -0.31
SKA3-204ENST00000462482 EGLN1Q9GZT9 426 aa13.14□□□□□ -0.31
SKA3-204ENST00000462482 POLR2J3Q9H1A7 115 aaKnown RBP13.14□□□□□ -0.31
SKA3-204ENST00000462482 NANOGQ9H9S0 305 aa13.14□□□□□ -0.31
SKA3-204ENST00000462482 SIAEQ9HAT2 523 aa13.14□□□□□ -0.31
SKA3-204ENST00000462482 INTS9Q9NV88 658 aaKnown RBP13.14□□□□□ -0.31
SKA3-204ENST00000462482 SH3GLB1Q9Y371 365 aa13.14□□□□□ -0.31
SKA3-204ENST00000462482 YLPM1P49750 1951 aaKnown RBP13.13□□□□□ -0.31
SKA3-204ENST00000462482 J3QLI3 93 aa13.13□□□□□ -0.31
SKA3-204ENST00000462482 RGS9O75916 674 aaPredicted RBP13.13□□□□□ -0.31
SKA3-204ENST00000462482 OR7A10O76100 309 aa13.13□□□□□ -0.31
SKA3-204ENST00000462482 LYPD3O95274 346 aa13.13□□□□□ -0.31
SKA3-204ENST00000462482 IGHV3-13P01766 116 aa13.13□□□□□ -0.31
SKA3-204ENST00000462482 STOMP27105 288 aa13.13□□□□□ -0.31
SKA3-204ENST00000462482 CFPP27918 469 aa13.13□□□□□ -0.31
SKA3-204ENST00000462482 IFNA8P32881 189 aa13.13□□□□□ -0.31
SKA3-204ENST00000462482 GDI2P50395 445 aaKnown RBP13.13□□□□□ -0.31
SKA3-204ENST00000462482 ZNF81P51508 661 aa13.13□□□□□ -0.31
SKA3-204ENST00000462482 UGT2B15P54855 530 aa13.13□□□□□ -0.31
SKA3-204ENST00000462482 ERVS71-1P61550 626 aa13.13□□□□□ -0.31
SKA3-204ENST00000462482 MRPS34P82930 218 aaKnown RBP13.13□□□□□ -0.31
SKA3-204ENST00000462482 GLO1Q04760 184 aa13.13□□□□□ -0.31
SKA3-204ENST00000462482 RPL18Q07020 188 aaKnown RBP13.13□□□□□ -0.31
SKA3-204ENST00000462482 SLC3A1Q07837 685 aa13.13□□□□□ -0.31
SKA3-204ENST00000462482 SELPLGQ14242 412 aa13.13□□□□□ -0.31
SKA3-204ENST00000462482 HIST3H3Q16695 136 aa13.13□□□□□ -0.31
SKA3-204ENST00000462482 VMACQ2NL98 169 aa13.13□□□□□ -0.31
SKA3-204ENST00000462482 PABPC1L2AQ5JQF8 200 aa13.13□□□□□ -0.31
SKA3-204ENST00000462482 USP43Q70EL4 1123 aa13.13□□□□□ -0.31
SKA3-204ENST00000462482 PEG10Q86TG7 708 aaKnown RBP13.13□□□□□ -0.31
SKA3-204ENST00000462482 RETREG3Q86VR2 466 aa13.13□□□□□ -0.31
SKA3-204ENST00000462482 C1orf174Q8IYL3 243 aa13.13□□□□□ -0.31
SKA3-204ENST00000462482 SEMA6DQ8NFY4 1073 aa13.13□□□□□ -0.31
SKA3-204ENST00000462482 OR4D11Q8NGI4 311 aa13.13□□□□□ -0.31
SKA3-204ENST00000462482 TSPAN32Q96QS1 320 aa13.13□□□□□ -0.31
SKA3-204ENST00000462482 SUCNR1Q9BXA5 334 aa13.13□□□□□ -0.31
SKA3-204ENST00000462482 SMURF2Q9HAU4 748 aa13.13□□□□□ -0.31
SKA3-204ENST00000462482 CYSLTR2Q9NS75 346 aa13.13□□□□□ -0.31
SKA3-204ENST00000462482 TRMUO75648 421 aaKnown RBP13.12□□□□□ -0.31
SKA3-204ENST00000462482 OR5F1O95221 314 aa13.12□□□□□ -0.31
SKA3-204ENST00000462482 AQP2P41181 271 aa13.12□□□□□ -0.31
SKA3-204ENST00000462482 LIMS1P48059 325 aa13.12□□□□□ -0.31
SKA3-204ENST00000462482 CD47Q08722 323 aa13.12□□□□□ -0.31
SKA3-204ENST00000462482 SGCAQ16586 387 aa13.12□□□□□ -0.31
SKA3-204ENST00000462482 C10orf128Q5T292 105 aa13.12□□□□□ -0.31
SKA3-204ENST00000462482 DCAF12L2Q5VW00 463 aa13.12□□□□□ -0.31
SKA3-204ENST00000462482 ALDH16A1Q8IZ83 802 aa13.12□□□□□ -0.31
SKA3-204ENST00000462482 BPIFB2Q8N4F0 458 aa13.12□□□□□ -0.31
SKA3-204ENST00000462482 NANPQ8TBE9 248 aa13.12□□□□□ -0.31
SKA3-204ENST00000462482 TMEM239Q8WW34 195 aa13.12□□□□□ -0.31
SKA3-204ENST00000462482 ASB10Q8WXI3 467 aa13.12□□□□□ -0.31
SKA3-204ENST00000462482 CCL17Q92583 94 aa13.12□□□□□ -0.31
SKA3-204ENST00000462482 THOC1Q96FV9 657 aaKnown RBP13.12□□□□□ -0.31
SKA3-204ENST00000462482 RBP7Q96R05 134 aa13.12□□□□□ -0.31
SKA3-204ENST00000462482 GAL3ST1Q99999 423 aa13.12□□□□□ -0.31
SKA3-204ENST00000462482 ECSITQ9BQ95 431 aa13.12□□□□□ -0.31
SKA3-204ENST00000462482 SIKE1Q9BRV8 207 aa13.12□□□□□ -0.31
SKA3-204ENST00000462482 MRPL13Q9BYD1 178 aaKnown RBP13.12□□□□□ -0.31
SKA3-204ENST00000462482 MEPEQ9NQ76 525 aaPredicted RBP13.12□□□□□ -0.31
SKA3-204ENST00000462482 MED31Q9Y3C7 131 aa13.12□□□□□ -0.31
SKA3-204ENST00000462482 WIPI2Q9Y4P8 454 aa13.12□□□□□ -0.31
SKA3-204ENST00000462482 LOC105371242A0A075B767 164 aa13.11□□□□□ -0.31
SKA3-204ENST00000462482 ISPDA4D126 451 aa13.11□□□□□ -0.31
SKA3-204ENST00000462482 C5orf49A4QMS7 147 aa13.11□□□□□ -0.31
SKA3-204ENST00000462482 SPRY3O43610 288 aa13.11□□□□□ -0.31
SKA3-204ENST00000462482 PLPP2O43688 288 aa13.11□□□□□ -0.31
SKA3-204ENST00000462482 IGF2P01344 180 aa13.11□□□□□ -0.31
SKA3-204ENST00000462482 MMP7P09237 267 aaPredicted RBP13.11□□□□□ -0.31
SKA3-204ENST00000462482 GATA3P23771 443 aa13.11□□□□□ -0.31
SKA3-204ENST00000462482 LIPAP38571 399 aa13.11□□□□□ -0.31
SKA3-204ENST00000462482 HILS1P60008 231 aa13.11□□□□□ -0.31
SKA3-204ENST00000462482 PCBD1P61457 104 aa13.11□□□□□ -0.31
SKA3-204ENST00000462482 TAF11Q15544 211 aa13.11□□□□□ -0.31
SKA3-204ENST00000462482 ZMAT1Q5H9K5 638 aa13.11□□□□□ -0.31
SKA3-204ENST00000462482 ARL9Q6T311 187 aa13.11□□□□□ -0.31
SKA3-204ENST00000462482 CCDC80Q76M96 950 aa13.11□□□□□ -0.31
SKA3-204ENST00000462482 C1QL2Q7Z5L3 287 aa13.11□□□□□ -0.31
SKA3-204ENST00000462482 PFN4Q8NHR9 129 aa13.11□□□□□ -0.31
SKA3-204ENST00000462482 FNDC8Q8TC99 324 aa13.11□□□□□ -0.31
SKA3-204ENST00000462482 ST7LQ8TDW4 575 aa13.11□□□□□ -0.31
SKA3-204ENST00000462482 FAM216AQ8WUB2 273 aa13.11□□□□□ -0.31
SKA3-204ENST00000462482 NSMAFQ92636 917 aa13.11□□□□□ -0.31
SKA3-204ENST00000462482 PRSS27Q9BQR3 290 aa13.11□□□□□ -0.31
SKA3-204ENST00000462482 PLA2G12AQ9BZM1 189 aa13.11□□□□□ -0.31
SKA3-204ENST00000462482 MRGBPQ9NV56 204 aa13.11□□□□□ -0.31
SKA3-204ENST00000462482 CGGBP1Q9UFW8 167 aaPredicted RBP13.11□□□□□ -0.31
SKA3-204ENST00000462482 RIMS3Q9UJD0 308 aa13.11□□□□□ -0.31
SKA3-204ENST00000462482 A0A0G2JND7 137 aa13.1□□□□□ -0.31
SKA3-204ENST00000462482 SLC2A10O95528 541 aa13.1□□□□□ -0.31
SKA3-204ENST00000462482 IGHV2-5P01817 119 aa13.1□□□□□ -0.31
SKA3-204ENST00000462482 THRBP10828 461 aa13.1□□□□□ -0.31
SKA3-204ENST00000462482 ZNF32P17041 273 aa13.1□□□□□ -0.31
SKA3-204ENST00000462482 FPR2P25090 351 aa13.1□□□□□ -0.31
SKA3-204ENST00000462482 ARHGDIAP52565 204 aa13.1□□□□□ -0.31
SKA3-204ENST00000462482 ZNF133P52736 654 aaPredicted RBP13.1□□□□□ -0.31
SKA3-204ENST00000462482 SPATA46Q5T0L3 261 aa13.1□□□□□ -0.31
SKA3-204ENST00000462482 THEM4Q5T1C6 240 aa13.1□□□□□ -0.31
SKA3-204ENST00000462482 METTL21CQ5VZV1 264 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms