RNA–Protein interactions for RNA: ENST00000449744.1

CHD3-205, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 880 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-205ENST00000449744 MAN2C1Q9NTJ4 1040 aa13.14□□□□□ -0.31
CHD3-205ENST00000449744 GPR160Q9UJ42 338 aa13.14□□□□□ -0.31
CHD3-205ENST00000449744 RPS6KA6Q9UK32 745 aa13.14□□□□□ -0.31
CHD3-205ENST00000449744 KCNS2Q9ULS6 477 aa13.14□□□□□ -0.31
CHD3-205ENST00000449744 TRAV27A0A087WT01 109 aa13.13□□□□□ -0.31
CHD3-205ENST00000449744 A0A087WUU8 490 aa13.13□□□□□ -0.31
CHD3-205ENST00000449744 LOC100289279A0A1B0GTE1 492 aa13.13□□□□□ -0.31
CHD3-205ENST00000449744 A6NIZ1 184 aa13.13□□□□□ -0.31
CHD3-205ENST00000449744 FFAR1O14842 300 aa13.13□□□□□ -0.31
CHD3-205ENST00000449744 GMNNO75496 209 aa13.13□□□□□ -0.31
CHD3-205ENST00000449744 IGHMP01871 453 aa13.13□□□□□ -0.31
CHD3-205ENST00000449744 LCKP06239 509 aa13.13□□□□□ -0.31
CHD3-205ENST00000449744 ZNF23P17027 643 aa13.13□□□□□ -0.31
CHD3-205ENST00000449744 TCN1P20061 433 aaPredicted RBP13.13□□□□□ -0.31
CHD3-205ENST00000449744 GIFP27352 417 aa13.13□□□□□ -0.31
CHD3-205ENST00000449744 PRDX6P30041 224 aa13.13□□□□□ -0.31
CHD3-205ENST00000449744 CDAP32320 146 aa13.13□□□□□ -0.31
CHD3-205ENST00000449744 RAD52P43351 418 aa13.13□□□□□ -0.31
CHD3-205ENST00000449744 ALDH3B1P43353 468 aa13.13□□□□□ -0.31
CHD3-205ENST00000449744 SLC9A3P48764 834 aa13.13□□□□□ -0.31
CHD3-205ENST00000449744 RAP1BP61224 184 aa13.13□□□□□ -0.31
CHD3-205ENST00000449744 RAP1AP62834 184 aa13.13□□□□□ -0.31
CHD3-205ENST00000449744 MAD2L1BPQ15013 274 aaPredicted RBP13.13□□□□□ -0.31
CHD3-205ENST00000449744 THEM4Q5T1C6 240 aa13.13□□□□□ -0.31
CHD3-205ENST00000449744 FAM166AQ6J272 317 aa13.13□□□□□ -0.31
CHD3-205ENST00000449744 SLC25A47Q6Q0C1 308 aa13.13□□□□□ -0.31
CHD3-205ENST00000449744 CPLX4Q7Z7G2 160 aa13.13□□□□□ -0.31
CHD3-205ENST00000449744 LRP11Q86VZ4 500 aa13.13□□□□□ -0.31
CHD3-205ENST00000449744 MEX3DQ86XN8 651 aaKnown RBP13.13□□□□□ -0.31
CHD3-205ENST00000449744 ICA1LQ8NDH6 482 aa13.13□□□□□ -0.31
CHD3-205ENST00000449744 BEX2Q9BXY8 128 aa13.13□□□□□ -0.31
CHD3-205ENST00000449744 NDEL1Q9GZM8 345 aa13.13□□□□□ -0.31
CHD3-205ENST00000449744 SHARPINQ9H0F6 387 aa13.13□□□□□ -0.31
CHD3-205ENST00000449744 MYLK2Q9H1R3 596 aa13.13□□□□□ -0.31
CHD3-205ENST00000449744 SPAG4Q9NPE6 437 aa13.13□□□□□ -0.31
CHD3-205ENST00000449744 TMEM160Q9NX00 188 aa13.13□□□□□ -0.31
CHD3-205ENST00000449744 ADA2Q9NZK5 511 aa13.13□□□□□ -0.31
CHD3-205ENST00000449744 ABCD2Q9UBJ2 740 aa13.13□□□□□ -0.31
CHD3-205ENST00000449744 LPAR3Q9UBY5 353 aa13.13□□□□□ -0.31
CHD3-205ENST00000449744 FAM32AQ9Y421 112 aaKnown RBP13.13□□□□□ -0.31
CHD3-205ENST00000449744 SNAP29O95721 258 aa13.12□□□□□ -0.31
CHD3-205ENST00000449744 IGFBP1P08833 259 aaPredicted RBP13.12□□□□□ -0.31
CHD3-205ENST00000449744 MMP7P09237 267 aaPredicted RBP13.12□□□□□ -0.31
CHD3-205ENST00000449744 FUT4P22083 530 aa13.12□□□□□ -0.31
CHD3-205ENST00000449744 CCNOP22674 350 aa13.12□□□□□ -0.31
CHD3-205ENST00000449744 RPL4P36578 427 aaKnown RBP13.12□□□□□ -0.31
CHD3-205ENST00000449744 CHN2P52757 468 aa13.12□□□□□ -0.31
CHD3-205ENST00000449744 NKPD1Q17RQ9 610 aa13.12□□□□□ -0.31
CHD3-205ENST00000449744 PABPC1L2AQ5JQF8 200 aa13.12□□□□□ -0.31
CHD3-205ENST00000449744 GLYATQ6IB77 296 aa13.12□□□□□ -0.31
CHD3-205ENST00000449744 MBOAT2Q6ZWT7 520 aa13.12□□□□□ -0.31
CHD3-205ENST00000449744 PAQR4Q8N4S7 273 aaPredicted RBP13.12□□□□□ -0.31
CHD3-205ENST00000449744 LRRC75AQ8NAA5 344 aa13.12□□□□□ -0.31
CHD3-205ENST00000449744 OR13C2Q8NGS9 318 aa13.12□□□□□ -0.31
CHD3-205ENST00000449744 SYNPRQ8TBG9 265 aa13.12□□□□□ -0.31
CHD3-205ENST00000449744 C11orf40Q8WZ69 217 aa13.12□□□□□ -0.31
CHD3-205ENST00000449744 NMD3Q96D46 503 aaKnown RBP13.12□□□□□ -0.31
CHD3-205ENST00000449744 MSI2Q96DH6 328 aaKnown RBP13.12□□□□□ -0.31
CHD3-205ENST00000449744 TSPAN32Q96QS1 320 aa13.12□□□□□ -0.31
CHD3-205ENST00000449744 REPIN1Q9BWE0 567 aaKnown RBP13.12□□□□□ -0.31
CHD3-205ENST00000449744 BCL2L14Q9BZR8 327 aa13.12□□□□□ -0.31
CHD3-205ENST00000449744 ANKRD19PQ9H560 264 aa13.12□□□□□ -0.31
CHD3-205ENST00000449744 CHODLQ9H9P2 273 aa13.12□□□□□ -0.31
CHD3-205ENST00000449744 MYEF2Q9P2K5 600 aaKnown RBP13.12□□□□□ -0.31
CHD3-205ENST00000449744 EGFL7Q9UHF1 273 aa13.12□□□□□ -0.31
CHD3-205ENST00000449744 TMEM5Q9Y2B1 443 aa13.12□□□□□ -0.31
CHD3-205ENST00000449744 UGT2A1Q9Y4X1 527 aa13.12□□□□□ -0.31
CHD3-205ENST00000449744 ENPP4Q9Y6X5 453 aa13.12□□□□□ -0.31
CHD3-205ENST00000449744 YLPM1P49750 1951 aaKnown RBP13.12□□□□□ -0.31
CHD3-205ENST00000449744 RTTNQ86VV8 2226 aa13.12□□□□□ -0.31
CHD3-205ENST00000449744 IGKV1D-43A0A0B4J1Z2 117 aa13.11□□□□□ -0.31
CHD3-205ENST00000449744 LRP5LA4QPB2 252 aa13.11□□□□□ -0.31
CHD3-205ENST00000449744 LYNX1G3V0Z9 82 aa13.11□□□□□ -0.31
CHD3-205ENST00000449744 SNX3O60493 162 aa13.11□□□□□ -0.31
CHD3-205ENST00000449744 TGFAP01135 160 aa13.11□□□□□ -0.31
CHD3-205ENST00000449744 FAM157CP0CG43 387 aa13.11□□□□□ -0.31
CHD3-205ENST00000449744 LYNX1P0DP58 116 aa13.11□□□□□ -0.31
CHD3-205ENST00000449744 ZNF32P17041 273 aa13.11□□□□□ -0.31
CHD3-205ENST00000449744 STOMP27105 288 aa13.11□□□□□ -0.31
CHD3-205ENST00000449744 APEX1P27695 318 aaKnown RBP13.11□□□□□ -0.31
CHD3-205ENST00000449744 GPR4P46093 362 aa13.11□□□□□ -0.31
CHD3-205ENST00000449744 UCP2P55851 309 aa13.11□□□□□ -0.31
CHD3-205ENST00000449744 KLF3P57682 345 aaPredicted RBP13.11□□□□□ -0.31
CHD3-205ENST00000449744 ALKBH6Q3KRA9 238 aa13.11□□□□□ -0.31
CHD3-205ENST00000449744 FAM27BQ5VT28 67 aa13.11□□□□□ -0.31
CHD3-205ENST00000449744 TBPL2Q6SJ96 375 aa13.11□□□□□ -0.31
CHD3-205ENST00000449744 ZNF519Q8TB69 540 aa13.11□□□□□ -0.31
CHD3-205ENST00000449744 SNX33Q8WV41 574 aa13.11□□□□□ -0.31
CHD3-205ENST00000449744 NABP1Q96AH0 204 aa13.11□□□□□ -0.31
CHD3-205ENST00000449744 NMNAT1Q9HAN9 279 aaPredicted RBP13.11□□□□□ -0.31
CHD3-205ENST00000449744 TAAR3PQ9P1P4 343 aa13.11□□□□□ -0.31
CHD3-205ENST00000449744 EIF3KQ9UBQ5 218 aaKnown RBP13.11□□□□□ -0.31
CHD3-205ENST00000449744 GRHPRQ9UBQ7 328 aa13.11□□□□□ -0.31
CHD3-205ENST00000449744 SAMD4AQ9UPU9 718 aaKnown RBP13.11□□□□□ -0.31
CHD3-205ENST00000449744 A0A1W2PPL8 197 aa13.1□□□□□ -0.31
CHD3-205ENST00000449744 PRSS23O95084 383 aa13.1□□□□□ -0.31
CHD3-205ENST00000449744 CLPTM1O96005 669 aa13.1□□□□□ -0.31
CHD3-205ENST00000449744 H1F0P07305 194 aaKnown RBP13.1□□□□□ -0.31
CHD3-205ENST00000449744 NAT2P11245 290 aa13.1□□□□□ -0.31
CHD3-205ENST00000449744 DRD4P21917 467 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms