RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 TSLPQ969D9 159 aa10.78□□□□□ -0.68
MSH6-204ENST00000445503 TINAGL1Q9GZM7 467 aaPredicted RBP10.78□□□□□ -0.68
MSH6-204ENST00000445503 SEMA6CQ9H3T2 930 aa10.78□□□□□ -0.68
MSH6-204ENST00000445503 METTL8Q9H825 291 aaKnown RBP10.78□□□□□ -0.68
MSH6-204ENST00000445503 EMC3Q9P0I2 261 aa10.78□□□□□ -0.68
MSH6-204ENST00000445503 TMEM269A0A1B0GVZ9 245 aa10.77□□□□□ -0.68
MSH6-204ENST00000445503 GSTZ1O43708 216 aaPredicted RBP10.77□□□□□ -0.68
MSH6-204ENST00000445503 SUSD5O60279 629 aa10.77□□□□□ -0.68
MSH6-204ENST00000445503 LPLP06858 475 aa10.77□□□□□ -0.68
MSH6-204ENST00000445503 PGCP20142 388 aa10.77□□□□□ -0.68
MSH6-204ENST00000445503 RPL35P42766 123 aaKnown RBP10.77□□□□□ -0.68
MSH6-204ENST00000445503 S100A10P60903 97 aa10.77□□□□□ -0.68
MSH6-204ENST00000445503 IL13RA1P78552 427 aa10.77□□□□□ -0.68
MSH6-204ENST00000445503 MC2RQ01718 297 aa10.77□□□□□ -0.68
MSH6-204ENST00000445503 ZNF74Q16587 644 aa10.77□□□□□ -0.68
MSH6-204ENST00000445503 DEFB133Q30KQ1 61 aa10.77□□□□□ -0.68
MSH6-204ENST00000445503 NPSR1Q6W5P4 371 aa10.77□□□□□ -0.68
MSH6-204ENST00000445503 GABRG1Q8N1C3 465 aa10.77□□□□□ -0.68
MSH6-204ENST00000445503 DCBLD2Q96PD2 775 aa10.77□□□□□ -0.68
MSH6-204ENST00000445503 PLEKHA1Q9HB21 404 aa10.77□□□□□ -0.68
MSH6-204ENST00000445503 SERTAD3Q9UJW9 196 aa10.77□□□□□ -0.68
MSH6-204ENST00000445503 K7EQS6 105 aa10.77□□□□□ -0.69
MSH6-204ENST00000445503 P2RY10O00398 339 aa10.77□□□□□ -0.69
MSH6-204ENST00000445503 PRKACAP17612 351 aa10.77□□□□□ -0.69
MSH6-204ENST00000445503 RABIFP47224 123 aa10.77□□□□□ -0.69
MSH6-204ENST00000445503 OR3A2P47893 321 aa10.77□□□□□ -0.69
MSH6-204ENST00000445503 CCDC157Q569K6 752 aa10.77□□□□□ -0.69
MSH6-204ENST00000445503 WDR38Q5JTN6 314 aa10.77□□□□□ -0.69
MSH6-204ENST00000445503 C3orf33Q6P1S2 294 aa10.77□□□□□ -0.69
MSH6-204ENST00000445503 EID2Q8N6I1 236 aa10.77□□□□□ -0.69
MSH6-204ENST00000445503 HGDQ93099 445 aa10.77□□□□□ -0.69
MSH6-204ENST00000445503 JAM3Q9BX67 310 aa10.77□□□□□ -0.69
MSH6-204ENST00000445503 PBX4Q9BYU1 374 aa10.77□□□□□ -0.69
MSH6-204ENST00000445503 APMAPQ9HDC9 416 aa10.77□□□□□ -0.69
MSH6-204ENST00000445503 MTCL1Q9Y4B5 1905 aaKnown RBP10.77□□□□□ -0.69
MSH6-204ENST00000445503 LOC100289279A0A1B0GTE1 492 aa10.77□□□□□ -0.69
MSH6-204ENST00000445503 ARPC3O15145 178 aa10.77□□□□□ -0.69
MSH6-204ENST00000445503 SHOXO15266 292 aa10.77□□□□□ -0.69
MSH6-204ENST00000445503 XRCC3O43542 346 aa10.77□□□□□ -0.69
MSH6-204ENST00000445503 IGF2P01344 180 aa10.77□□□□□ -0.69
MSH6-204ENST00000445503 PGAM2P15259 253 aa10.77□□□□□ -0.69
MSH6-204ENST00000445503 EIF2B5Q13144 721 aaKnown RBP10.77□□□□□ -0.69
MSH6-204ENST00000445503 ETFDHQ16134 617 aa10.77□□□□□ -0.69
MSH6-204ENST00000445503 ACKR1Q16570 336 aa10.77□□□□□ -0.69
MSH6-204ENST00000445503 ZNF626Q68DY1 528 aa10.77□□□□□ -0.69
MSH6-204ENST00000445503 NPRL2Q8WTW4 380 aa10.77□□□□□ -0.69
MSH6-204ENST00000445503 SPACA5Q96QH8 159 aa10.77□□□□□ -0.69
MSH6-204ENST00000445503 VRK1Q99986 396 aaPredicted RBP10.77□□□□□ -0.69
MSH6-204ENST00000445503 COA3Q9Y2R0 106 aaPredicted RBP10.77□□□□□ -0.69
MSH6-204ENST00000445503 KRBOX1C9JBD0 128 aa10.77□□□□□ -0.69
MSH6-204ENST00000445503 HCKP08631 526 aa10.77□□□□□ -0.69
MSH6-204ENST00000445503 VSIG10L2P0DP72 767 aa10.77□□□□□ -0.69
MSH6-204ENST00000445503 HSD11B1P28845 292 aa10.77□□□□□ -0.69
MSH6-204ENST00000445503 AGTR1P30556 359 aa10.77□□□□□ -0.69
MSH6-204ENST00000445503 TNFRSF4P43489 277 aa10.77□□□□□ -0.69
MSH6-204ENST00000445503 MNX1P50219 401 aaPredicted RBP10.77□□□□□ -0.69
MSH6-204ENST00000445503 RPS11P62280 158 aaKnown RBP eCLIP10.77□□□□□ -0.69
MSH6-204ENST00000445503 CEBPEQ15744 281 aa10.77□□□□□ -0.69
MSH6-204ENST00000445503 DCAF12L2Q5VW00 463 aa10.77□□□□□ -0.69
MSH6-204ENST00000445503 FAM160A2Q8N612 972 aaPredicted RBP10.77□□□□□ -0.69
MSH6-204ENST00000445503 LSMEM1Q8N8F7 131 aa10.77□□□□□ -0.69
MSH6-204ENST00000445503 TRAF4Q9BUZ4 470 aaPredicted RBP10.77□□□□□ -0.69
MSH6-204ENST00000445503 MMP25Q9NPA2 562 aa10.77□□□□□ -0.69
MSH6-204ENST00000445503 HHLA2Q9UM44 414 aa10.77□□□□□ -0.69
MSH6-204ENST00000445503 UNC13CQ8NB66 2214 aa10.76□□□□□ -0.69
MSH6-204ENST00000445503 C17orf51A8MQB3 221 aa10.76□□□□□ -0.69
MSH6-204ENST00000445503 GLO1Q04760 184 aa10.76□□□□□ -0.69
MSH6-204ENST00000445503 OR7A5Q15622 319 aa10.76□□□□□ -0.69
MSH6-204ENST00000445503 FHL5Q5TD97 284 aa10.76□□□□□ -0.69
MSH6-204ENST00000445503 TMEM81Q6P7N7 255 aa10.76□□□□□ -0.69
MSH6-204ENST00000445503 COX15Q7KZN9 410 aa10.76□□□□□ -0.69
MSH6-204ENST00000445503 TMEM17Q86X19 198 aa10.76□□□□□ -0.69
MSH6-204ENST00000445503 PAQR8Q8TEZ7 354 aa10.76□□□□□ -0.69
MSH6-204ENST00000445503 TAAR8Q969N4 342 aa10.76□□□□□ -0.69
MSH6-204ENST00000445503 SLC41A2Q96JW4 573 aa10.76□□□□□ -0.69
MSH6-204ENST00000445503 NKX2-4Q9H2Z4 354 aa10.76□□□□□ -0.69
MSH6-204ENST00000445503 DZANK1Q9NVP4 752 aa10.76□□□□□ -0.69
MSH6-204ENST00000445503 ZNF705EA8MWA4 302 aaPredicted RBP10.76□□□□□ -0.69
MSH6-204ENST00000445503 SNRPGP15A8MWD9 76 aa10.76□□□□□ -0.69
MSH6-204ENST00000445503 ICOSLGO75144 302 aa10.76□□□□□ -0.69
MSH6-204ENST00000445503 AIMP2Q13155 320 aaKnown RBP10.76□□□□□ -0.69
MSH6-204ENST00000445503 SERTAD2Q14140 314 aa10.76□□□□□ -0.69
MSH6-204ENST00000445503 HAGHLQ6PII5 290 aaPredicted RBP10.76□□□□□ -0.69
MSH6-204ENST00000445503 ZNF321PQ8N8H1 164 aa10.76□□□□□ -0.69
MSH6-204ENST00000445503 ASB12Q8WXK4 309 aa10.76□□□□□ -0.69
MSH6-204ENST00000445503 TM4SF19Q96DZ7 209 aa10.76□□□□□ -0.69
MSH6-204ENST00000445503 VSTM2LQ96N03 204 aa10.76□□□□□ -0.69
MSH6-204ENST00000445503 MSRAQ9UJ68 235 aa10.76□□□□□ -0.69
MSH6-204ENST00000445503 PRAMEF26H0Y7S4 382 aa10.76□□□□□ -0.69
MSH6-204ENST00000445503 H7C2Y5 167 aa10.76□□□□□ -0.69
MSH6-204ENST00000445503 H7C417 338 aa10.76□□□□□ -0.69
MSH6-204ENST00000445503 PHYHO14832 338 aa10.76□□□□□ -0.69
MSH6-204ENST00000445503 MPIG6BO95866 241 aa10.76□□□□□ -0.69
MSH6-204ENST00000445503 ADRA2CP18825 462 aa10.76□□□□□ -0.69
MSH6-204ENST00000445503 GFERP55789 205 aa10.76□□□□□ -0.69
MSH6-204ENST00000445503 CHRDL2Q6WN34 429 aa10.76□□□□□ -0.69
MSH6-204ENST00000445503 SLC51BQ86UW2 128 aa10.76□□□□□ -0.69
MSH6-204ENST00000445503 PXT1Q8NFP0 134 aa10.76□□□□□ -0.69
MSH6-204ENST00000445503 OR13C9Q8NGT0 318 aa10.76□□□□□ -0.69
MSH6-204ENST00000445503 GPR119Q8TDV5 335 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms