RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 EPXP11678 715 aa7.53□□□□□ -1.2
CD44-208ENST00000428726 GNALP38405 381 aa7.53□□□□□ -1.2
CD44-208ENST00000428726 CPEB4Q17RY0 729 aaKnown RBP eCLIP7.53□□□□□ -1.2
CD44-208ENST00000428726 WDR45BQ5MNZ6 344 aa7.53□□□□□ -1.2
CD44-208ENST00000428726 LYSMD4Q5XG99 296 aa7.53□□□□□ -1.2
CD44-208ENST00000428726 HBMQ6B0K9 141 aa7.53□□□□□ -1.2
CD44-208ENST00000428726 VASH2Q86V25 355 aa7.53□□□□□ -1.2
CD44-208ENST00000428726 LRRC18Q8N456 261 aa7.53□□□□□ -1.2
CD44-208ENST00000428726 JAGN1Q8N5M9 183 aa7.53□□□□□ -1.2
CD44-208ENST00000428726 MS4A15Q8N5U1 240 aa7.53□□□□□ -1.2
CD44-208ENST00000428726 POMGNT2Q8NAT1 580 aa7.53□□□□□ -1.2
CD44-208ENST00000428726 OR2T4Q8NH00 348 aa7.53□□□□□ -1.2
CD44-208ENST00000428726 SYNPRQ8TBG9 265 aa7.53□□□□□ -1.2
CD44-208ENST00000428726 ZFAND1Q8TCF1 268 aa7.53□□□□□ -1.2
CD44-208ENST00000428726 AKAP1Q92667 903 aaKnown RBP eCLIP7.53□□□□□ -1.2
CD44-208ENST00000428726 TAS2R10Q9NYW0 307 aa7.53□□□□□ -1.2
CD44-208ENST00000428726 EPHA6Q9UF33 1036 aa7.53□□□□□ -1.2
CD44-208ENST00000428726 POLR1DQ9Y2S0 133 aa7.53□□□□□ -1.2
CD44-208ENST00000428726 FITM1A5D6W6 292 aa7.53□□□□□ -1.2
CD44-208ENST00000428726 C5orf63A6NC05 138 aa7.53□□□□□ -1.2
CD44-208ENST00000428726 K7ESF4 209 aa7.53□□□□□ -1.2
CD44-208ENST00000428726 KHDRBS3O75525 346 aaKnown RBP7.53□□□□□ -1.2
CD44-208ENST00000428726 ZNF205O95201 554 aa7.53□□□□□ -1.2
CD44-208ENST00000428726 HPXP02790 462 aa7.53□□□□□ -1.2
CD44-208ENST00000428726 IGKV3-11P04433 115 aa7.53□□□□□ -1.2
CD44-208ENST00000428726 PITPNBP48739 271 aa7.53□□□□□ -1.2
CD44-208ENST00000428726 INSM1Q01101 510 aaPredicted RBP7.53□□□□□ -1.2
CD44-208ENST00000428726 TRIM61Q5EBN2 209 aa7.53□□□□□ -1.2
CD44-208ENST00000428726 DMKNQ6E0U4 476 aaPredicted RBP7.53□□□□□ -1.2
CD44-208ENST00000428726 COX15Q7KZN9 410 aa7.53□□□□□ -1.2
CD44-208ENST00000428726 ZNF627Q7L945 461 aa7.53□□□□□ -1.2
CD44-208ENST00000428726 KRT77Q7Z794 578 aa7.53□□□□□ -1.2
CD44-208ENST00000428726 TMEM105Q8N8V8 129 aa7.53□□□□□ -1.2
CD44-208ENST00000428726 SLC26A10Q8NG04 563 aa7.53□□□□□ -1.2
CD44-208ENST00000428726 OR5AK2Q8NH90 309 aa7.53□□□□□ -1.2
CD44-208ENST00000428726 OIT3Q8WWZ8 545 aa7.53□□□□□ -1.2
CD44-208ENST00000428726 DAZLQ92904 295 aaKnown RBP7.53□□□□□ -1.2
CD44-208ENST00000428726 CCNL2Q96S94 520 aaPredicted RBP7.53□□□□□ -1.2
CD44-208ENST00000428726 SLC19A3Q9BZV2 496 aa7.53□□□□□ -1.2
CD44-208ENST00000428726 B3GNT4Q9C0J1 378 aa7.53□□□□□ -1.2
CD44-208ENST00000428726 VSX1Q9NZR4 365 aaPredicted RBP7.53□□□□□ -1.2
CD44-208ENST00000428726 MRPS17Q9Y2R5 130 aaKnown RBP7.53□□□□□ -1.2
CD44-208ENST00000428726 FKBP7Q9Y680 259 aa7.53□□□□□ -1.2
CD44-208ENST00000428726 MAP1AP78559 2803 aaPredicted RBP7.53□□□□□ -1.2
CD44-208ENST00000428726 IGHV5-10-1A0A0J9YXX1 117 aa7.52□□□□□ -1.21
CD44-208ENST00000428726 ANXA2P2A6NMY6 339 aa7.52□□□□□ -1.21
CD44-208ENST00000428726 P2RY10O00398 339 aa7.52□□□□□ -1.21
CD44-208ENST00000428726 EFNA2O43921 213 aa7.52□□□□□ -1.21
CD44-208ENST00000428726 IL33O95760 270 aa7.52□□□□□ -1.21
CD44-208ENST00000428726 ANXA2P07355 339 aaKnown RBP7.52□□□□□ -1.21
CD44-208ENST00000428726 OR2T7P0C7T2 308 aa7.52□□□□□ -1.21
CD44-208ENST00000428726 ANXA7P20073 488 aaKnown RBP7.52□□□□□ -1.21
CD44-208ENST00000428726 ERP29P30040 261 aaKnown RBP7.52□□□□□ -1.21
CD44-208ENST00000428726 OTX2P32243 289 aa7.52□□□□□ -1.21
CD44-208ENST00000428726 STARP49675 285 aa7.52□□□□□ -1.21
CD44-208ENST00000428726 NRG3P56975 720 aa7.52□□□□□ -1.21
CD44-208ENST00000428726 EIF2B1Q14232 305 aaKnown RBP7.52□□□□□ -1.21
CD44-208ENST00000428726 NKPD1Q17RQ9 610 aa7.52□□□□□ -1.21
CD44-208ENST00000428726 TMEM176BQ3YBM2 270 aaPredicted RBP7.52□□□□□ -1.21
CD44-208ENST00000428726 SLC22A6Q4U2R8 563 aa7.52□□□□□ -1.21
CD44-208ENST00000428726 TOR2AQ5JU69 321 aa7.52□□□□□ -1.21
CD44-208ENST00000428726 ZNF468Q5VIY5 522 aaPredicted RBP7.52□□□□□ -1.21
CD44-208ENST00000428726 SLC25A25Q6KCM7 469 aa7.52□□□□□ -1.21
CD44-208ENST00000428726 DPY19L2P2Q6ZN68 376 aa7.52□□□□□ -1.21
CD44-208ENST00000428726 C17orf107Q6ZR85 190 aa7.52□□□□□ -1.21
CD44-208ENST00000428726 LUZP2Q86TE4 346 aa7.52□□□□□ -1.21
CD44-208ENST00000428726 PRSS35Q8N3Z0 413 aa7.52□□□□□ -1.21
CD44-208ENST00000428726 OR1N1Q8NGS0 311 aa7.52□□□□□ -1.21
CD44-208ENST00000428726 OR2T27Q8NH04 317 aa7.52□□□□□ -1.21
CD44-208ENST00000428726 SMIM19Q96E16 107 aa7.52□□□□□ -1.21
CD44-208ENST00000428726 ZC3HAV1LQ96H79 300 aaKnown RBP7.52□□□□□ -1.21
CD44-208ENST00000428726 CACNG6Q9BXT2 260 aa7.52□□□□□ -1.21
CD44-208ENST00000428726 SLA2Q9H6Q3 261 aa7.52□□□□□ -1.21
CD44-208ENST00000428726 FARSAQ9Y285 508 aaKnown RBP7.52□□□□□ -1.21
CD44-208ENST00000428726 PTRH2Q9Y3E5 179 aaKnown RBP7.52□□□□□ -1.21
CD44-208ENST00000428726 DOCK10Q96BY6 2186 aa7.52□□□□□ -1.21
CD44-208ENST00000428726 SPTAN1Q13813 2472 aaKnown RBP7.52□□□□□ -1.21
CD44-208ENST00000428726 KCNAB3O43448 404 aa7.52□□□□□ -1.21
CD44-208ENST00000428726 SLC43A1O75387 559 aa7.52□□□□□ -1.21
CD44-208ENST00000428726 SERPINA3P01011 423 aa7.52□□□□□ -1.21
CD44-208ENST00000428726 RLN1P04808 185 aa7.52□□□□□ -1.21
CD44-208ENST00000428726 VEGFCP49767 419 aa7.52□□□□□ -1.21
CD44-208ENST00000428726 BIDP55957 195 aa7.52□□□□□ -1.21
CD44-208ENST00000428726 ACTA2P62736 377 aa7.52□□□□□ -1.21
CD44-208ENST00000428726 ACTG2P63267 376 aa7.52□□□□□ -1.21
CD44-208ENST00000428726 TLE3Q04726 772 aa7.52□□□□□ -1.21
CD44-208ENST00000428726 GGTLC2Q14390 218 aa7.52□□□□□ -1.21
CD44-208ENST00000428726 ELAVL1Q15717 326 aaKnown RBP7.52□□□□□ -1.21
CD44-208ENST00000428726 WDR38Q5JTN6 314 aa7.52□□□□□ -1.21
CD44-208ENST00000428726 C1orf140Q5VVS0 124 aa7.52□□□□□ -1.21
CD44-208ENST00000428726 FAM220AQ7Z4H9 259 aa7.52□□□□□ -1.21
CD44-208ENST00000428726 DCXRQ7Z4W1 244 aa7.52□□□□□ -1.21
CD44-208ENST00000428726 CDH24Q86UP0 819 aa7.52□□□□□ -1.21
CD44-208ENST00000428726 LRRC28Q86X40 367 aaPredicted RBP7.52□□□□□ -1.21
CD44-208ENST00000428726 SYS1Q8N2H4 156 aa7.52□□□□□ -1.21
CD44-208ENST00000428726 SPEM1Q8N4L4 309 aa7.52□□□□□ -1.21
CD44-208ENST00000428726 TEX19Q8NA77 164 aa7.52□□□□□ -1.21
CD44-208ENST00000428726 APCDD1LQ8NCL9 501 aa7.52□□□□□ -1.21
CD44-208ENST00000428726 OR2T35Q8NGX2 323 aa7.52□□□□□ -1.21
CD44-208ENST00000428726 SLC46A1Q96NT5 459 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms