RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 RPS4Y1P22090 263 aaKnown RBP2.19□□□□□ -2.06
VPS13A-208ENST00000423463 FKBP2P26885 142 aaKnown RBP2.19□□□□□ -2.06
VPS13A-208ENST00000423463 GCH1P30793 250 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 CEACAM8P31997 349 aaPredicted RBP2.19□□□□□ -2.06
VPS13A-208ENST00000423463 SLC6A8P48029 635 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 STARP49675 285 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 DLX5P56178 289 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 CLDN18P56856 261 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 NUP107P57740 925 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 GNGT1P63211 74 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 MRPS34P82930 218 aaKnown RBP2.19□□□□□ -2.06
VPS13A-208ENST00000423463 ZNF117Q03924 483 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 RBBP4Q09028 425 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 FUT5Q11128 374 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 SKP2Q13309 424 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 MAPK11Q15759 364 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 SLC25A53Q5H9E4 307 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 PDZK1Q5T2W1 519 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 GCNT6Q5T4J0 391 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 RIPPLY2Q5TAB7 128 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 RAET1LQ5VY80 246 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 RTL6Q6ICC9 239 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 REEP3Q6NUK4 255 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 ARSKQ6UWY0 536 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 CHMP1BQ7LBR1 199 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 SPATA21Q7Z572 469 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 DHDDSQ86SQ9 333 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 LACC1Q8IV20 430 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 SLC30A8Q8IWU4 369 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 MSRB3Q8IXL7 192 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 ZNF440Q8IYI8 595 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 ZNF614Q8N883 585 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 OR10Q1Q8NGQ4 319 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 OR52P1PQ8NH57 321 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 LILRB4Q8NHJ6 448 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 BBS10Q8TAM1 723 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 SLC38A5Q8WUX1 472 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 TMEM234Q8WY98 164 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 ST8SIA1Q92185 356 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 ELMOD3Q96FG2 381 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 AURKBQ96GD4 344 aaPredicted RBP2.19□□□□□ -2.06
VPS13A-208ENST00000423463 ANKRD27Q96NW4 1050 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 CGREF1Q99674 301 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 THUMPD3Q9BV44 507 aaKnown RBP2.19□□□□□ -2.06
VPS13A-208ENST00000423463 TEX12Q9BXU0 123 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 SLC38A1Q9H2H9 487 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 TMEM38AQ9H6F2 299 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 EVA1AQ9H8M9 152 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 HINT3Q9NQE9 182 aaKnown RBP2.19□□□□□ -2.06
VPS13A-208ENST00000423463 EXOSC3Q9NQT5 275 aaKnown RBP2.19□□□□□ -2.06
VPS13A-208ENST00000423463 SERINC1Q9NRX5 453 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 GID8Q9NWU2 228 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 PAQR5Q9NXK6 330 aaPredicted RBP2.19□□□□□ -2.06
VPS13A-208ENST00000423463 VAPAQ9P0L0 249 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 RPH3AQ9Y2J0 694 aaPredicted RBP2.19□□□□□ -2.06
VPS13A-208ENST00000423463 AP3M1Q9Y2T2 418 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 IFT52Q9Y366 437 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 ZNF337Q9Y3M9 751 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 FAM215AQ9Y5M1 114 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 KLF2Q9Y5W3 355 aaPredicted RBP2.19□□□□□ -2.06
VPS13A-208ENST00000423463 FASNP49327 2511 aaKnown RBP2.19□□□□□ -2.06
VPS13A-208ENST00000423463 SPEGQ15772 3267 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 NBASA2RRP1 2371 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 LOC100653049A0A140TA62 436 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 PRORSD1PA6NEY8 169 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 GJE1A6NN92 205 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 B4DXG7 233 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 FAAHO00519 579 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 FBP2O00757 339 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 NDUFAB1O14561 156 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 MRASO14807 208 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 ADAMDEC1O15204 470 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 SNX3O60493 162 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 SERPINB7O75635 380 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 KRT34O76011 436 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 RCBTB2O95199 551 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 NUDT14O95848 222 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 C1QCP02747 245 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 CRHP06850 196 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 GP1BBP13224 206 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 UQCRBP14927 111 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 CD1EP15812 388 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 IL11P20809 199 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 ME2P23368 584 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 ELK4P28324 431 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 PRDX6P30041 224 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 CHRNB4P30926 498 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 APOBEC1P41238 236 aaKnown RBP2.19□□□□□ -2.06
VPS13A-208ENST00000423463 SLC15A1P46059 708 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 CLK1P49759 484 aaKnown RBP2.19□□□□□ -2.06
VPS13A-208ENST00000423463 LHX2P50458 406 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 ERVFC1-1P60608 527 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 CDK6Q00534 326 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 QPRTQ15274 297 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 MAPK14Q16539 360 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 TRMT5Q32P41 509 aaKnown RBP2.19□□□□□ -2.06
VPS13A-208ENST00000423463 PLPPR5Q32ZL2 321 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 SLC25A35Q3KQZ1 300 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 ACSF3Q4G176 576 aaPredicted RBP2.19□□□□□ -2.06
VPS13A-208ENST00000423463 LIN52Q52LA3 116 aa2.19□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms