RNA–Protein interactions for RNA: ENST00000411767.6

PTPN13-202, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPN13, Length 8,119 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-202ENST00000411767 NOVA1P51513 510 aaKnown RBP4.25□□□□□ -1.73
PTPN13-202ENST00000411767 DGKEP52429 567 aa4.25□□□□□ -1.73
PTPN13-202ENST00000411767 RAB38P57729 211 aa4.25□□□□□ -1.73
PTPN13-202ENST00000411767 CKS1BP61024 79 aa4.25□□□□□ -1.73
PTPN13-202ENST00000411767 RAB40BQ12829 278 aa4.25□□□□□ -1.73
PTPN13-202ENST00000411767 GABRA6Q16445 453 aa4.25□□□□□ -1.73
PTPN13-202ENST00000411767 ADPRMQ3LIE5 342 aa4.25□□□□□ -1.73
PTPN13-202ENST00000411767 CYB5RLQ6IPT4 315 aa4.25□□□□□ -1.73
PTPN13-202ENST00000411767 FBXO46Q6PJ61 603 aaPredicted RBP4.25□□□□□ -1.73
PTPN13-202ENST00000411767 KMT5CQ86Y97 462 aa4.25□□□□□ -1.73
PTPN13-202ENST00000411767 DND1Q8IYX4 353 aaKnown RBP4.25□□□□□ -1.73
PTPN13-202ENST00000411767 CLRN3Q8NCR9 226 aa4.25□□□□□ -1.73
PTPN13-202ENST00000411767 CDS1Q92903 461 aa4.25□□□□□ -1.73
PTPN13-202ENST00000411767 TEPSINQ96N21 525 aa4.25□□□□□ -1.73
PTPN13-202ENST00000411767 SMIM7Q9BQ49 75 aa4.25□□□□□ -1.73
PTPN13-202ENST00000411767 ULBP2Q9BZM5 246 aa4.25□□□□□ -1.73
PTPN13-202ENST00000411767 MS4A6AQ9H2W1 248 aa4.25□□□□□ -1.73
PTPN13-202ENST00000411767 DLL4Q9NR61 685 aa4.25□□□□□ -1.73
PTPN13-202ENST00000411767 CEP170Q5SW79 1584 aa4.25□□□□□ -1.73
PTPN13-202ENST00000411767 ZFYVE9O95405 1425 aa4.25□□□□□ -1.73
PTPN13-202ENST00000411767 C1QTNF9BB2RNN3 333 aa4.25□□□□□ -1.73
PTPN13-202ENST00000411767 H7C2G1 150 aa4.25□□□□□ -1.73
PTPN13-202ENST00000411767 PRICKLE3O43900 615 aaPredicted RBP4.25□□□□□ -1.73
PTPN13-202ENST00000411767 C7P10643 843 aa4.25□□□□□ -1.73
PTPN13-202ENST00000411767 CD8BP10966 210 aa4.25□□□□□ -1.73
PTPN13-202ENST00000411767 PRLHRP49683 370 aa4.25□□□□□ -1.73
PTPN13-202ENST00000411767 RPS16P62249 146 aaKnown RBP4.25□□□□□ -1.73
PTPN13-202ENST00000411767 ABHD18Q0P651 414 aa4.25□□□□□ -1.73
PTPN13-202ENST00000411767 PCBP1Q15365 356 aaKnown RBP eCLIP4.25□□□□□ -1.73
PTPN13-202ENST00000411767 METTL2BQ6P1Q9 378 aaKnown RBP4.25□□□□□ -1.73
PTPN13-202ENST00000411767 AMIGO3Q86WK7 504 aa4.25□□□□□ -1.73
PTPN13-202ENST00000411767 NLGN4XQ8N0W4 816 aa4.25□□□□□ -1.73
PTPN13-202ENST00000411767 LGI3Q8N145 548 aa4.25□□□□□ -1.73
PTPN13-202ENST00000411767 FAM110BQ8TC76 370 aa4.25□□□□□ -1.73
PTPN13-202ENST00000411767 GPR148Q8TDV2 347 aa4.25□□□□□ -1.73
PTPN13-202ENST00000411767 OVOL2Q9BRP0 275 aa4.25□□□□□ -1.73
PTPN13-202ENST00000411767 PLSCR4Q9NRQ2 329 aa4.25□□□□□ -1.73
PTPN13-202ENST00000411767 HSPB7Q9UBY9 170 aa4.25□□□□□ -1.73
PTPN13-202ENST00000411767 BTNL2Q9UIR0 455 aa4.25□□□□□ -1.73
PTPN13-202ENST00000411767 MAP1LC3B2A6NCE7 125 aa4.25□□□□□ -1.73
PTPN13-202ENST00000411767 GABRPO00591 440 aa4.25□□□□□ -1.73
PTPN13-202ENST00000411767 RAB29O14966 203 aa4.25□□□□□ -1.73
PTPN13-202ENST00000411767 TCF21O43680 179 aa4.25□□□□□ -1.73
PTPN13-202ENST00000411767 SIGLEC6O43699 453 aa4.25□□□□□ -1.73
PTPN13-202ENST00000411767 SP9P0CG40 484 aa4.25□□□□□ -1.73
PTPN13-202ENST00000411767 HIST1H1EP10412 219 aaKnown RBP4.25□□□□□ -1.73
PTPN13-202ENST00000411767 NAT1P18440 290 aa4.25□□□□□ -1.73
PTPN13-202ENST00000411767 ELAVL4P26378 380 aaKnown RBP4.25□□□□□ -1.73
PTPN13-202ENST00000411767 RPS15AP62244 130 aaKnown RBP4.25□□□□□ -1.73
PTPN13-202ENST00000411767 SNAI3Q3KNW1 292 aa4.25□□□□□ -1.73
PTPN13-202ENST00000411767 LRRC10Q5BKY1 277 aa4.25□□□□□ -1.73
PTPN13-202ENST00000411767 PSMG4Q5JS54 123 aa4.25□□□□□ -1.73
PTPN13-202ENST00000411767 SFRP4Q6FHJ7 346 aaPredicted RBP4.25□□□□□ -1.73
PTPN13-202ENST00000411767 ZNF774Q6NX45 483 aa4.25□□□□□ -1.73
PTPN13-202ENST00000411767 UNC5DQ6UXZ4 953 aa4.25□□□□□ -1.73
PTPN13-202ENST00000411767 CEACAM20Q6UY09 585 aa4.25□□□□□ -1.73
PTPN13-202ENST00000411767 OVCH2Q7RTZ1 564 aa4.25□□□□□ -1.73
PTPN13-202ENST00000411767 ARHGEF39Q8N4T4 335 aa4.25□□□□□ -1.73
PTPN13-202ENST00000411767 ZNF384Q8TF68 577 aa4.25□□□□□ -1.73
PTPN13-202ENST00000411767 KTI12Q96EK9 354 aaPredicted RBP4.25□□□□□ -1.73
PTPN13-202ENST00000411767 UTP23Q9BRU9 249 aaKnown RBP4.25□□□□□ -1.73
PTPN13-202ENST00000411767 ADAT1Q9BUB4 502 aaKnown RBP4.25□□□□□ -1.73
PTPN13-202ENST00000411767 MRPL20Q9BYC9 149 aaKnown RBP4.25□□□□□ -1.73
PTPN13-202ENST00000411767 MAP1LC3BQ9GZQ8 125 aa4.25□□□□□ -1.73
PTPN13-202ENST00000411767 SPATC1LQ9H0A9 340 aa4.25□□□□□ -1.73
PTPN13-202ENST00000411767 C11orf54Q9H0W9 315 aaPredicted RBP4.25□□□□□ -1.73
PTPN13-202ENST00000411767 AKTIPQ9H8T0 292 aa4.25□□□□□ -1.73
PTPN13-202ENST00000411767 RHCGQ9UBD6 479 aa4.25□□□□□ -1.73
PTPN13-202ENST00000411767 ICAM5Q9UMF0 924 aa4.25□□□□□ -1.73
PTPN13-202ENST00000411767 SCAF11Q99590 1463 aaKnown RBP4.25□□□□□ -1.73
PTPN13-202ENST00000411767 APBA3O96018 575 aa4.25□□□□□ -1.73
PTPN13-202ENST00000411767 ZNF26P17031 533 aaPredicted RBP4.25□□□□□ -1.73
PTPN13-202ENST00000411767 CSNK1A1P48729 337 aa4.25□□□□□ -1.73
PTPN13-202ENST00000411767 PARM1Q6UWI2 310 aa4.25□□□□□ -1.73
PTPN13-202ENST00000411767 ZCCHC23Q6ZST2 131 aa4.25□□□□□ -1.73
PTPN13-202ENST00000411767 NETO1Q8TDF5 533 aa4.25□□□□□ -1.73
PTPN13-202ENST00000411767 RBPMSQ93062 196 aaKnown RBP4.25□□□□□ -1.73
PTPN13-202ENST00000411767 NEIL2Q969S2 332 aa4.25□□□□□ -1.73
PTPN13-202ENST00000411767 OR5B2Q96R09 309 aa4.25□□□□□ -1.73
PTPN13-202ENST00000411767 HIST1H4GQ99525 98 aa4.25□□□□□ -1.73
PTPN13-202ENST00000411767 WDR18Q9BV38 432 aa4.25□□□□□ -1.73
PTPN13-202ENST00000411767 NRSN2Q9GZP1 204 aa4.25□□□□□ -1.73
PTPN13-202ENST00000411767 ZDHHC7Q9NXF8 308 aa4.25□□□□□ -1.73
PTPN13-202ENST00000411767 NAT8BQ9UHF3 227 aa4.25□□□□□ -1.73
PTPN13-202ENST00000411767 TIMM22Q9Y584 194 aa4.25□□□□□ -1.73
PTPN13-202ENST00000411767 PIK3C2GO75747 1445 aa4.25□□□□□ -1.73
PTPN13-202ENST00000411767 ITSN2Q9NZM3 1697 aa4.25□□□□□ -1.73
PTPN13-202ENST00000411767 SLC25A4P12235 298 aa4.24□□□□□ -1.73
PTPN13-202ENST00000411767 ZNF28P17035 718 aa4.24□□□□□ -1.73
PTPN13-202ENST00000411767 FDXRP22570 491 aa4.24□□□□□ -1.73
PTPN13-202ENST00000411767 VIPR2P41587 438 aa4.24□□□□□ -1.73
PTPN13-202ENST00000411767 CRKLP46109 303 aaKnown RBP4.24□□□□□ -1.73
PTPN13-202ENST00000411767 TMEM267Q0VDI3 215 aaPredicted RBP4.24□□□□□ -1.73
PTPN13-202ENST00000411767 SPCS2Q15005 226 aa4.24□□□□□ -1.73
PTPN13-202ENST00000411767 PLEKHS1Q5SXH7 462 aa4.24□□□□□ -1.73
PTPN13-202ENST00000411767 CCBE1Q6UXH8 406 aaPredicted RBP4.24□□□□□ -1.73
PTPN13-202ENST00000411767 Q6ZTK2 550 aa4.24□□□□□ -1.73
PTPN13-202ENST00000411767 LIMS2Q7Z4I7 341 aa4.24□□□□□ -1.73
PTPN13-202ENST00000411767 ADGRE4PQ86SQ3 457 aa4.24□□□□□ -1.73
PTPN13-202ENST00000411767 CCDC190Q86UF4 302 aa4.24□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 82 ms