RNA–Protein interactions for RNA: ENST00000409251.7

PTPRN-202, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 1 (best) BASIC

Gene PTPRN, Length 3,622 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-202ENST00000409251 C21orf62-AS1Q17RA5 79 aa11.79□□□□□ -0.52
PTPRN-202ENST00000409251 FAM76BQ5HYJ3 339 aa11.79□□□□□ -0.52
PTPRN-202ENST00000409251 NKAIN2Q5VXU1 208 aa11.79□□□□□ -0.52
PTPRN-202ENST00000409251 RNLSQ5VYX0 342 aa11.79□□□□□ -0.52
PTPRN-202ENST00000409251 CYB5R2Q6BCY4 276 aa11.79□□□□□ -0.52
PTPRN-202ENST00000409251 TMEM205Q6UW68 189 aa11.79□□□□□ -0.52
PTPRN-202ENST00000409251 PNPLA2Q96AD5 504 aa11.79□□□□□ -0.52
PTPRN-202ENST00000409251 SMIM19Q96E16 107 aa11.79□□□□□ -0.52
PTPRN-202ENST00000409251 CALML5Q9NZT1 146 aa11.79□□□□□ -0.52
PTPRN-202ENST00000409251 PRRC2CQ9Y520 2896 aaKnown RBP11.79□□□□□ -0.52
PTPRN-202ENST00000409251 TRAPPC13A5PLN9 417 aa11.79□□□□□ -0.52
PTPRN-202ENST00000409251 SOX1O00570 391 aaPredicted RBP11.79□□□□□ -0.52
PTPRN-202ENST00000409251 OIP5O43482 229 aa11.79□□□□□ -0.52
PTPRN-202ENST00000409251 PGAM2P15259 253 aa11.79□□□□□ -0.52
PTPRN-202ENST00000409251 PCSK2P16519 638 aa11.79□□□□□ -0.52
PTPRN-202ENST00000409251 PRSS3P35030 304 aa11.79□□□□□ -0.52
PTPRN-202ENST00000409251 DUSP5Q16690 384 aa11.79□□□□□ -0.52
PTPRN-202ENST00000409251 NKAPLQ5M9Q1 402 aa11.79□□□□□ -0.52
PTPRN-202ENST00000409251 FAM199XQ6PEV8 388 aaPredicted RBP11.79□□□□□ -0.52
PTPRN-202ENST00000409251 ACBD4Q8NC06 268 aa11.79□□□□□ -0.52
PTPRN-202ENST00000409251 ZPLD1Q8TCW7 415 aa11.79□□□□□ -0.52
PTPRN-202ENST00000409251 ELP5Q8TE02 316 aa11.79□□□□□ -0.52
PTPRN-202ENST00000409251 LMX1AQ8TE12 382 aa11.79□□□□□ -0.52
PTPRN-202ENST00000409251 SETD7Q8WTS6 366 aaKnown RBP11.79□□□□□ -0.52
PTPRN-202ENST00000409251 MAP3K3Q99759 626 aa11.79□□□□□ -0.52
PTPRN-202ENST00000409251 GABRG3Q99928 467 aa11.79□□□□□ -0.52
PTPRN-202ENST00000409251 GSN-AS1Q9NRJ2 163 aa11.79□□□□□ -0.52
PTPRN-202ENST00000409251 EMC3Q9P0I2 261 aa11.79□□□□□ -0.52
PTPRN-202ENST00000409251 CGGBP1Q9UFW8 167 aaPredicted RBP11.79□□□□□ -0.52
PTPRN-202ENST00000409251 EXOGQ9Y2C4 368 aaKnown RBP11.79□□□□□ -0.52
PTPRN-202ENST00000409251 TMEM272A0A1B0GTI8 110 aa11.78□□□□□ -0.52
PTPRN-202ENST00000409251 CXorf51AA0A1B0GTR3 108 aa11.78□□□□□ -0.52
PTPRN-202ENST00000409251 P2RX6O15547 441 aa11.78□□□□□ -0.52
PTPRN-202ENST00000409251 EMC8O43402 210 aa11.78□□□□□ -0.52
PTPRN-202ENST00000409251 NME1P15531 152 aaKnown RBP11.78□□□□□ -0.52
PTPRN-202ENST00000409251 GABRA3P34903 492 aa11.78□□□□□ -0.52
PTPRN-202ENST00000409251 PPP1R14AQ96A00 147 aa11.78□□□□□ -0.52
PTPRN-202ENST00000409251 FOXJ3Q9UPW0 622 aa11.78□□□□□ -0.52
PTPRN-202ENST00000409251 PIN1P1O15428 100 aa11.78□□□□□ -0.52
PTPRN-202ENST00000409251 RNF224P0DH78 156 aa11.78□□□□□ -0.52
PTPRN-202ENST00000409251 RAB6AP20340 208 aa11.78□□□□□ -0.52
PTPRN-202ENST00000409251 PCBP4P57723 403 aaKnown RBP11.78□□□□□ -0.52
PTPRN-202ENST00000409251 CXADRP78310 365 aa11.78□□□□□ -0.52
PTPRN-202ENST00000409251 SMAD2Q15796 467 aaKnown RBP11.78□□□□□ -0.52
PTPRN-202ENST00000409251 USF2Q15853 346 aaPredicted RBP11.78□□□□□ -0.52
PTPRN-202ENST00000409251 EIF2S3LQ2VIR3 472 aaKnown RBP11.78□□□□□ -0.52
PTPRN-202ENST00000409251 ALG10BQ5I7T1 473 aa11.78□□□□□ -0.52
PTPRN-202ENST00000409251 PABPC1L2AQ5JQF8 200 aa11.78□□□□□ -0.52
PTPRN-202ENST00000409251 STEAP1BQ6NZ63 245 aa11.78□□□□□ -0.52
PTPRN-202ENST00000409251 ZNF585AQ6P3V2 769 aa11.78□□□□□ -0.52
PTPRN-202ENST00000409251 LRRC69Q6ZNQ3 347 aa11.78□□□□□ -0.52
PTPRN-202ENST00000409251 ZNRF4Q8WWF5 429 aa11.78□□□□□ -0.52
PTPRN-202ENST00000409251 RHOVQ96L33 236 aa11.78□□□□□ -0.52
PTPRN-202ENST00000409251 SLC19A3Q9BZV2 496 aa11.78□□□□□ -0.52
PTPRN-202ENST00000409251 UBE2ZQ9H832 354 aaPredicted RBP11.78□□□□□ -0.52
PTPRN-202ENST00000409251 ATXN7L1Q9ULK2 861 aaPredicted RBP11.78□□□□□ -0.52
PTPRN-202ENST00000409251 ZNF254O75437 659 aa11.78□□□□□ -0.52
PTPRN-202ENST00000409251 ACTL6AO96019 429 aa11.78□□□□□ -0.52
PTPRN-202ENST00000409251 PLGP00747 810 aaPredicted RBP11.78□□□□□ -0.52
PTPRN-202ENST00000409251 OR4E1P0C645 316 aa11.78□□□□□ -0.52
PTPRN-202ENST00000409251 RBM34P42696 430 aaKnown RBP11.78□□□□□ -0.52
PTPRN-202ENST00000409251 POU3F4P49335 361 aa11.78□□□□□ -0.52
PTPRN-202ENST00000409251 PWWP2BQ6NUJ5 590 aa11.78□□□□□ -0.52
PTPRN-202ENST00000409251 LEG1Q6P5S2 330 aa11.78□□□□□ -0.52
PTPRN-202ENST00000409251 TMEM184AQ6ZMB5 413 aa11.78□□□□□ -0.52
PTPRN-202ENST00000409251 SLC29A4Q7RTT9 530 aa11.78□□□□□ -0.52
PTPRN-202ENST00000409251 FAM122BQ7Z309 247 aa11.78□□□□□ -0.52
PTPRN-202ENST00000409251 OR7G2Q8NG99 324 aa11.78□□□□□ -0.52
PTPRN-202ENST00000409251 OR5T2Q8NGG2 359 aa11.78□□□□□ -0.52
PTPRN-202ENST00000409251 OR56A1Q8NGH5 318 aa11.78□□□□□ -0.52
PTPRN-202ENST00000409251 FAM174AQ8TBP5 190 aa11.78□□□□□ -0.52
PTPRN-202ENST00000409251 ZBTB8AQ96BR9 441 aa11.78□□□□□ -0.52
PTPRN-202ENST00000409251 NCDNQ9UBB6 729 aa11.78□□□□□ -0.52
PTPRN-202ENST00000409251 COLQQ9Y215 455 aaPredicted RBP11.78□□□□□ -0.52
PTPRN-202ENST00000409251 PTPRZ1P23471 2315 aaPredicted RBP11.77□□□□□ -0.52
PTPRN-202ENST00000409251 hCG_1809904A0A1W2PP81 198 aa11.77□□□□□ -0.52
PTPRN-202ENST00000409251 A0A1W2PR64 198 aa11.77□□□□□ -0.52
PTPRN-202ENST00000409251 A0A1W2PRV1 198 aa11.77□□□□□ -0.52
PTPRN-202ENST00000409251 ALOX12BO75342 701 aa11.77□□□□□ -0.52
PTPRN-202ENST00000409251 CYB5AP00167 134 aa11.77□□□□□ -0.52
PTPRN-202ENST00000409251 CD2P06729 351 aa11.77□□□□□ -0.52
PTPRN-202ENST00000409251 NANOS3P60323 173 aaKnown RBP11.77□□□□□ -0.52
PTPRN-202ENST00000409251 EFNB1P98172 346 aa11.77□□□□□ -0.52
PTPRN-202ENST00000409251 DMKNQ6E0U4 476 aaPredicted RBP11.77□□□□□ -0.52
PTPRN-202ENST00000409251 LCN10Q6JVE6 187 aa11.77□□□□□ -0.52
PTPRN-202ENST00000409251 AVL9Q8NBF6 648 aa11.77□□□□□ -0.52
PTPRN-202ENST00000409251 OR5AK2Q8NH90 309 aa11.77□□□□□ -0.52
PTPRN-202ENST00000409251 TIMP4Q99727 224 aa11.77□□□□□ -0.52
PTPRN-202ENST00000409251 MRPS18AQ9NVS2 196 aaKnown RBP11.77□□□□□ -0.52
PTPRN-202ENST00000409251 GPN3Q9UHW5 284 aaPredicted RBP11.77□□□□□ -0.52
PTPRN-202ENST00000409251 CNOT1A5YKK6 2376 aaKnown RBP11.77□□□□□ -0.53
PTPRN-202ENST00000409251 A0A087WV62 115 aa11.77□□□□□ -0.53
PTPRN-202ENST00000409251 CPED1A4D0V7 1026 aa11.77□□□□□ -0.53
PTPRN-202ENST00000409251 HIST1H1TP22492 207 aaPredicted RBP11.77□□□□□ -0.53
PTPRN-202ENST00000409251 SDHAP31040 664 aa11.77□□□□□ -0.53
PTPRN-202ENST00000409251 C21orf58P58505 322 aa11.77□□□□□ -0.53
PTPRN-202ENST00000409251 PPIAP62937 165 aaKnown RBP11.77□□□□□ -0.53
PTPRN-202ENST00000409251 RPS27AP62979 156 aaKnown RBP11.77□□□□□ -0.53
PTPRN-202ENST00000409251 UBA52P62987 128 aaKnown RBP11.77□□□□□ -0.53
PTPRN-202ENST00000409251 IL13RA1P78552 427 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms