RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 RADILQ96JH8 1075 aa6.12□□□□□ -1.43
LIMA1-202ENST00000394943 UPB1Q9UBR1 384 aa6.12□□□□□ -1.43
LIMA1-202ENST00000394943 FBXO9Q9UK97 447 aaPredicted RBP6.12□□□□□ -1.43
LIMA1-202ENST00000394943 RALYQ9UKM9 306 aaKnown RBP6.12□□□□□ -1.43
LIMA1-202ENST00000394943 TLN1Q9Y490 2541 aaKnown RBP6.11□□□□□ -1.43
LIMA1-202ENST00000394943 LOC100130705A0A1B0GUX0 176 aa6.11□□□□□ -1.43
LIMA1-202ENST00000394943 TRIM64CA6NLI5 447 aa6.11□□□□□ -1.43
LIMA1-202ENST00000394943 DCTN6O00399 190 aa6.11□□□□□ -1.43
LIMA1-202ENST00000394943 PRKYO43930 277 aa6.11□□□□□ -1.43
LIMA1-202ENST00000394943 ZNF23P17027 643 aa6.11□□□□□ -1.43
LIMA1-202ENST00000394943 EPHA2P29317 976 aa6.11□□□□□ -1.43
LIMA1-202ENST00000394943 CAPGP40121 348 aa6.11□□□□□ -1.43
LIMA1-202ENST00000394943 FOXG1P55316 489 aaPredicted RBP6.11□□□□□ -1.43
LIMA1-202ENST00000394943 CSNK2BP67870 215 aa6.11□□□□□ -1.43
LIMA1-202ENST00000394943 MYBPC1Q00872 1141 aa6.11□□□□□ -1.43
LIMA1-202ENST00000394943 AQP6Q13520 282 aa6.11□□□□□ -1.43
LIMA1-202ENST00000394943 TBRG1Q3YBR2 411 aa6.11□□□□□ -1.43
LIMA1-202ENST00000394943 TTC23Q5W5X9 447 aa6.11□□□□□ -1.43
LIMA1-202ENST00000394943 CASP12Q6UXS9 341 aa6.11□□□□□ -1.43
LIMA1-202ENST00000394943 C22orf34Q6ZV56 151 aa6.11□□□□□ -1.43
LIMA1-202ENST00000394943 ZNF295-AS1Q8N0V1 137 aa6.11□□□□□ -1.43
LIMA1-202ENST00000394943 DEPDC4Q8N2C3 294 aa6.11□□□□□ -1.43
LIMA1-202ENST00000394943 OR2T4Q8NH00 348 aa6.11□□□□□ -1.43
LIMA1-202ENST00000394943 MBD6Q96DN6 1003 aa6.11□□□□□ -1.43
LIMA1-202ENST00000394943 ZNF837Q96EG3 531 aaPredicted RBP6.11□□□□□ -1.43
LIMA1-202ENST00000394943 ERMAPQ96PL5 475 aaPredicted RBP6.11□□□□□ -1.43
LIMA1-202ENST00000394943 PRRG4Q9BZD6 226 aa6.11□□□□□ -1.43
LIMA1-202ENST00000394943 HINT3Q9NQE9 182 aaKnown RBP6.11□□□□□ -1.43
LIMA1-202ENST00000394943 INPP5EQ9NRR6 644 aa6.11□□□□□ -1.43
LIMA1-202ENST00000394943 LHFPL6Q9Y693 200 aa6.11□□□□□ -1.43
LIMA1-202ENST00000394943 CHD6Q8TD26 2715 aa6.11□□□□□ -1.43
LIMA1-202ENST00000394943 ZNF726A6NNF4 738 aa6.11□□□□□ -1.43
LIMA1-202ENST00000394943 GNGT2O14610 69 aa6.11□□□□□ -1.43
LIMA1-202ENST00000394943 RENP00797 406 aa6.11□□□□□ -1.43
LIMA1-202ENST00000394943 TFP02787 698 aa6.11□□□□□ -1.43
LIMA1-202ENST00000394943 OR8G3PP0DMU2 310 aa6.11□□□□□ -1.43
LIMA1-202ENST00000394943 ZNF3P17036 446 aa6.11□□□□□ -1.43
LIMA1-202ENST00000394943 MSR1P21757 451 aa6.11□□□□□ -1.43
LIMA1-202ENST00000394943 ACSM1Q08AH1 577 aa6.11□□□□□ -1.43
LIMA1-202ENST00000394943 CRMP1Q14194 572 aa6.11□□□□□ -1.43
LIMA1-202ENST00000394943 MELKQ14680 651 aa6.11□□□□□ -1.43
LIMA1-202ENST00000394943 ZBTB49Q6ZSB9 765 aa6.11□□□□□ -1.43
LIMA1-202ENST00000394943 MEPCEQ7L2J0 689 aaKnown RBP6.11□□□□□ -1.43
LIMA1-202ENST00000394943 ATP6V1C2Q8NEY4 427 aa6.11□□□□□ -1.43
LIMA1-202ENST00000394943 GTPBP3Q969Y2 492 aaKnown RBP6.11□□□□□ -1.43
LIMA1-202ENST00000394943 SPSB4Q96A44 273 aa6.11□□□□□ -1.43
LIMA1-202ENST00000394943 SDCCAG3Q96C92 435 aa6.11□□□□□ -1.43
LIMA1-202ENST00000394943 ZNF582Q96NG8 517 aaPredicted RBP6.11□□□□□ -1.43
LIMA1-202ENST00000394943 YTHDF1Q9BYJ9 559 aaKnown RBP6.11□□□□□ -1.43
LIMA1-202ENST00000394943 VCX3BQ9H321 246 aa6.11□□□□□ -1.43
LIMA1-202ENST00000394943 ZNF442Q9H7R0 627 aa6.11□□□□□ -1.43
LIMA1-202ENST00000394943 CRLF2Q9HC73 371 aa6.11□□□□□ -1.43
LIMA1-202ENST00000394943 CNOT2Q9NZN8 540 aaKnown RBP6.11□□□□□ -1.43
LIMA1-202ENST00000394943 NPAP1Q9NZP6 1156 aa6.11□□□□□ -1.43
LIMA1-202ENST00000394943 U3KQV3 271 aa6.11□□□□□ -1.43
LIMA1-202ENST00000394943 ERICH4A6NGS2 130 aa6.11□□□□□ -1.43
LIMA1-202ENST00000394943 ABHD16AO95870 558 aa6.11□□□□□ -1.43
LIMA1-202ENST00000394943 WNT11O96014 354 aa6.11□□□□□ -1.43
LIMA1-202ENST00000394943 ADH4P08319 380 aa6.11□□□□□ -1.43
LIMA1-202ENST00000394943 NR1H2P55055 460 aa6.11□□□□□ -1.43
LIMA1-202ENST00000394943 CLRN1P58418 232 aa6.11□□□□□ -1.43
LIMA1-202ENST00000394943 PCBD1P61457 104 aa6.11□□□□□ -1.43
LIMA1-202ENST00000394943 TGFBR3Q03167 851 aa6.11□□□□□ -1.43
LIMA1-202ENST00000394943 IRF3Q14653 427 aa6.11□□□□□ -1.43
LIMA1-202ENST00000394943 MAD2L1BPQ15013 274 aaPredicted RBP6.11□□□□□ -1.43
LIMA1-202ENST00000394943 EFNB3Q15768 340 aa6.11□□□□□ -1.43
LIMA1-202ENST00000394943 SLC16A9Q7RTY1 509 aa6.11□□□□□ -1.43
LIMA1-202ENST00000394943 OR10S1Q8NGN2 331 aa6.11□□□□□ -1.43
LIMA1-202ENST00000394943 HAVCR2Q8TDQ0 301 aa6.11□□□□□ -1.43
LIMA1-202ENST00000394943 RNF133Q8WVZ7 376 aa6.11□□□□□ -1.43
LIMA1-202ENST00000394943 FBXO17Q96EF6 278 aa6.11□□□□□ -1.43
LIMA1-202ENST00000394943 POM121L2Q96KW2 1035 aa6.11□□□□□ -1.43
LIMA1-202ENST00000394943 RBP7Q96R05 134 aa6.11□□□□□ -1.43
LIMA1-202ENST00000394943 HCAR1Q9BXC0 346 aa6.11□□□□□ -1.43
LIMA1-202ENST00000394943 WNT5BQ9H1J7 359 aa6.11□□□□□ -1.43
LIMA1-202ENST00000394943 SEMA6AQ9H2E6 1030 aa6.11□□□□□ -1.43
LIMA1-202ENST00000394943 ADGRL4Q9HBW9 690 aa6.11□□□□□ -1.43
LIMA1-202ENST00000394943 NOX3Q9HBY0 568 aa6.11□□□□□ -1.43
LIMA1-202ENST00000394943 LRRC42Q9Y546 428 aa6.11□□□□□ -1.43
LIMA1-202ENST00000394943 FSTL3O95633 263 aa6.1□□□□□ -1.43
LIMA1-202ENST00000394943 ZNF84P51523 738 aa6.1□□□□□ -1.43
LIMA1-202ENST00000394943 ARF1P84077 181 aaKnown RBP6.1□□□□□ -1.43
LIMA1-202ENST00000394943 CEACAM16Q2WEN9 425 aa6.1□□□□□ -1.43
LIMA1-202ENST00000394943 C11orf71Q6IPW1 123 aa6.1□□□□□ -1.43
LIMA1-202ENST00000394943 DTX2Q86UW9 622 aa6.1□□□□□ -1.43
LIMA1-202ENST00000394943 SKA3Q8IX90 412 aa6.1□□□□□ -1.43
LIMA1-202ENST00000394943 ZNF100Q8IYN0 542 aa6.1□□□□□ -1.43
LIMA1-202ENST00000394943 GCNT2Q8N0V5 402 aa6.1□□□□□ -1.43
LIMA1-202ENST00000394943 ATG16L2Q8NAA4 619 aa6.1□□□□□ -1.43
LIMA1-202ENST00000394943 S100PBPQ96BU1 408 aa6.1□□□□□ -1.43
LIMA1-202ENST00000394943 WFIKKN1Q96NZ8 548 aa6.1□□□□□ -1.43
LIMA1-202ENST00000394943 IFT27Q9BW83 186 aa6.1□□□□□ -1.43
LIMA1-202ENST00000394943 C1QTNF5Q9BXJ0 243 aa6.1□□□□□ -1.43
LIMA1-202ENST00000394943 ULBP2Q9BZM5 246 aa6.1□□□□□ -1.43
LIMA1-202ENST00000394943 IGHV1-18A0A0C4DH31 117 aa6.1□□□□□ -1.43
LIMA1-202ENST00000394943 SHISA9B4DS77 424 aa6.1□□□□□ -1.43
LIMA1-202ENST00000394943 PHYHO14832 338 aa6.1□□□□□ -1.43
LIMA1-202ENST00000394943 GRNP28799 593 aaKnown RBP6.1□□□□□ -1.43
LIMA1-202ENST00000394943 RAB35Q15286 201 aa6.1□□□□□ -1.43
LIMA1-202ENST00000394943 LCN1P1Q5VSP4 162 aa6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms