RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 SLC35D1Q9NTN3 355 aa11.77□□□□□ -0.52
CCDC88C-204ENST00000389857 EIF4E2O60573 245 aaKnown RBP11.77□□□□□ -0.53
CCDC88C-204ENST00000389857 TCRBP04435 133 aa11.77□□□□□ -0.53
CCDC88C-204ENST00000389857 ARR3P36575 388 aa11.77□□□□□ -0.53
CCDC88C-204ENST00000389857 RPL13AP40429 203 aaKnown RBP11.77□□□□□ -0.53
CCDC88C-204ENST00000389857 TAS2R45P59539 299 aa11.77□□□□□ -0.53
CCDC88C-204ENST00000389857 CDC20BQ86Y33 519 aa11.77□□□□□ -0.53
CCDC88C-204ENST00000389857 MAML2Q8IZL2 1156 aaPredicted RBP11.77□□□□□ -0.53
CCDC88C-204ENST00000389857 OR51A4Q8NGJ6 313 aa11.77□□□□□ -0.53
CCDC88C-204ENST00000389857 OR2G3Q8NGZ4 309 aa11.77□□□□□ -0.53
CCDC88C-204ENST00000389857 TMEM38AQ9H6F2 299 aa11.77□□□□□ -0.53
CCDC88C-204ENST00000389857 QPCTLQ9NXS2 382 aa11.77□□□□□ -0.53
CCDC88C-204ENST00000389857 XKRY2A2RUG3 117 aa11.77□□□□□ -0.53
CCDC88C-204ENST00000389857 G3V3Y1 287 aa11.77□□□□□ -0.53
CCDC88C-204ENST00000389857 CTDSP2O14595 271 aa11.77□□□□□ -0.53
CCDC88C-204ENST00000389857 CHEK1O14757 476 aa11.77□□□□□ -0.53
CCDC88C-204ENST00000389857 TPOP07202 933 aa11.77□□□□□ -0.53
CCDC88C-204ENST00000389857 PTBP1P26599 531 aaKnown RBP eCLIP11.77□□□□□ -0.53
CCDC88C-204ENST00000389857 UBE2IP63279 158 aaKnown RBP11.77□□□□□ -0.53
CCDC88C-204ENST00000389857 C6orf15Q6UXA7 325 aaPredicted RBP11.77□□□□□ -0.53
CCDC88C-204ENST00000389857 LHFPL2Q6ZUX7 228 aa11.77□□□□□ -0.53
CCDC88C-204ENST00000389857 REEP6Q96HR9 211 aa11.77□□□□□ -0.53
CCDC88C-204ENST00000389857 EGLN2Q96KS0 407 aa11.77□□□□□ -0.53
CCDC88C-204ENST00000389857 SEC22CQ9BRL7 303 aa11.77□□□□□ -0.53
CCDC88C-204ENST00000389857 ZNF416Q9BWM5 594 aa11.77□□□□□ -0.53
CCDC88C-204ENST00000389857 DOT1LQ8TEK3 1739 aa11.77□□□□□ -0.53
CCDC88C-204ENST00000389857 M0QYG6 137 aa11.77□□□□□ -0.53
CCDC88C-204ENST00000389857 CHRM2P08172 466 aa11.77□□□□□ -0.53
CCDC88C-204ENST00000389857 TBPL2Q6SJ96 375 aa11.77□□□□□ -0.53
CCDC88C-204ENST00000389857 TMEM104Q8NE00 496 aa11.77□□□□□ -0.53
CCDC88C-204ENST00000389857 OR52N1Q8NH53 320 aa11.77□□□□□ -0.53
CCDC88C-204ENST00000389857 ZNF583Q96ND8 569 aa11.77□□□□□ -0.53
CCDC88C-204ENST00000389857 SPACA1Q9HBV2 294 aa11.77□□□□□ -0.53
CCDC88C-204ENST00000389857 SH2D7A6NKC9 451 aaPredicted RBP11.77□□□□□ -0.53
CCDC88C-204ENST00000389857 SLC31A2O15432 143 aa11.77□□□□□ -0.53
CCDC88C-204ENST00000389857 GJB3O75712 270 aa11.77□□□□□ -0.53
CCDC88C-204ENST00000389857 SEMA3BQ13214 749 aa11.77□□□□□ -0.53
CCDC88C-204ENST00000389857 SLC48A1Q6P1K1 146 aa11.77□□□□□ -0.53
CCDC88C-204ENST00000389857 SLCO4C1Q6ZQN7 724 aa11.77□□□□□ -0.53
CCDC88C-204ENST00000389857 SUMF1Q8NBK3 374 aa11.77□□□□□ -0.53
CCDC88C-204ENST00000389857 MARC2Q969Z3 335 aa11.77□□□□□ -0.53
CCDC88C-204ENST00000389857 THOC3Q96J01 351 aaKnown RBP11.77□□□□□ -0.53
CCDC88C-204ENST00000389857 NMES1Q9C002 83 aa11.77□□□□□ -0.53
CCDC88C-204ENST00000389857 GLIPR2Q9H4G4 154 aa11.77□□□□□ -0.53
CCDC88C-204ENST00000389857 MOB1AQ9H8S9 216 aa11.77□□□□□ -0.53
CCDC88C-204ENST00000389857 POLDIP2Q9Y2S7 368 aa11.77□□□□□ -0.53
CCDC88C-204ENST00000389857 LGALS8O00214 317 aa11.76□□□□□ -0.53
CCDC88C-204ENST00000389857 SOD1P00441 154 aa11.76□□□□□ -0.53
CCDC88C-204ENST00000389857 T-ENOLP0DO92 83 aa11.76□□□□□ -0.53
CCDC88C-204ENST00000389857 ZNF85Q03923 595 aa11.76□□□□□ -0.53
CCDC88C-204ENST00000389857 ADPRMQ3LIE5 342 aa11.76□□□□□ -0.53
CCDC88C-204ENST00000389857 SPRED1Q7Z699 444 aa11.76□□□□□ -0.53
CCDC88C-204ENST00000389857 THNSL2Q86YJ6 484 aa11.76□□□□□ -0.53
CCDC88C-204ENST00000389857 NXPE3Q969Y0 559 aa11.76□□□□□ -0.53
CCDC88C-204ENST00000389857 LANCL2Q9NS86 450 aa11.76□□□□□ -0.53
CCDC88C-204ENST00000389857 CHRNA9Q9UGM1 479 aa11.76□□□□□ -0.53
CCDC88C-204ENST00000389857 TRDV1A0A1B0GX56 115 aa11.76□□□□□ -0.53
CCDC88C-204ENST00000389857 ANGPTL5Q86XS5 388 aa11.76□□□□□ -0.53
CCDC88C-204ENST00000389857 OR8U1Q8NH10 309 aa11.76□□□□□ -0.53
CCDC88C-204ENST00000389857 ZPBPQ9BS86 351 aa11.76□□□□□ -0.53
CCDC88C-204ENST00000389857 GAB2Q9UQC2 676 aa11.76□□□□□ -0.53
CCDC88C-204ENST00000389857 SCN11AQ9UI33 1791 aa11.76□□□□□ -0.53
CCDC88C-204ENST00000389857 PMS2P1A4D2B8 440 aa11.76□□□□□ -0.53
CCDC88C-204ENST00000389857 ZNF749O43361 778 aa11.76□□□□□ -0.53
CCDC88C-204ENST00000389857 NPY4RP50391 375 aa11.76□□□□□ -0.53
CCDC88C-204ENST00000389857 TEKQ02763 1124 aa11.76□□□□□ -0.53
CCDC88C-204ENST00000389857 FGF21Q9NSA1 209 aa11.76□□□□□ -0.53
CCDC88C-204ENST00000389857 HCFC2Q9Y5Z7 792 aa11.76□□□□□ -0.53
CCDC88C-204ENST00000389857 SERTM2A0A1B0GWG4 89 aa11.76□□□□□ -0.53
CCDC88C-204ENST00000389857 SELENOFO60613 162 aa11.76□□□□□ -0.53
CCDC88C-204ENST00000389857 SMN1Q16637 294 aaKnown RBP11.76□□□□□ -0.53
CCDC88C-204ENST00000389857 PRAMEF5Q5TYX0 476 aa11.76□□□□□ -0.53
CCDC88C-204ENST00000389857 PRAMEF6Q5VXH4 476 aa11.76□□□□□ -0.53
CCDC88C-204ENST00000389857 NRARPQ7Z6K4 114 aa11.76□□□□□ -0.53
CCDC88C-204ENST00000389857 L3MBTL4Q8NA19 623 aa11.76□□□□□ -0.53
CCDC88C-204ENST00000389857 ARRDC2Q8TBH0 407 aa11.76□□□□□ -0.53
CCDC88C-204ENST00000389857 CTRCQ99895 268 aa11.76□□□□□ -0.53
CCDC88C-204ENST00000389857 NPFFR2Q9Y5X5 522 aa11.76□□□□□ -0.53
CCDC88C-204ENST00000389857 SLC5A10A0PJK1 596 aa11.76□□□□□ -0.53
CCDC88C-204ENST00000389857 NUDT19A8MXV4 375 aa11.76□□□□□ -0.53
CCDC88C-204ENST00000389857 RPL27P61353 136 aaKnown RBP11.76□□□□□ -0.53
CCDC88C-204ENST00000389857 RACK1P63244 317 aaKnown RBP11.76□□□□□ -0.53
CCDC88C-204ENST00000389857 CRMP1Q14194 572 aa11.76□□□□□ -0.53
CCDC88C-204ENST00000389857 ZNF620Q6ZNG0 422 aa11.76□□□□□ -0.53
CCDC88C-204ENST00000389857 PLPP7Q8NBV4 271 aa11.76□□□□□ -0.53
CCDC88C-204ENST00000389857 KCNE4Q8WWG9 221 aa11.76□□□□□ -0.53
CCDC88C-204ENST00000389857 DVL3Q92997 716 aaPredicted RBP11.76□□□□□ -0.53
CCDC88C-204ENST00000389857 ELF4Q99607 663 aaPredicted RBP11.76□□□□□ -0.53
CCDC88C-204ENST00000389857 ZNF468Q5VIY5 522 aaPredicted RBP11.76□□□□□ -0.53
CCDC88C-204ENST00000389857 SFT2D1Q8WV19 159 aa11.76□□□□□ -0.53
CCDC88C-204ENST00000389857 CSF3RQ99062 836 aa11.76□□□□□ -0.53
CCDC88C-204ENST00000389857 SNX11Q9Y5W9 270 aa11.76□□□□□ -0.53
CCDC88C-204ENST00000389857 CALCBP10092 127 aa11.75□□□□□ -0.53
CCDC88C-204ENST00000389857 ACHEP22303 614 aa11.75□□□□□ -0.53
CCDC88C-204ENST00000389857 TMEM52BQ4KMG9 183 aa11.75□□□□□ -0.53
CCDC88C-204ENST00000389857 LMNTD1Q8N9Z9 388 aa11.75□□□□□ -0.53
CCDC88C-204ENST00000389857 BPIFCQ8NFQ6 507 aa11.75□□□□□ -0.53
CCDC88C-204ENST00000389857 CXorf36Q9H7Y0 433 aa11.75□□□□□ -0.53
CCDC88C-204ENST00000389857 FABP7O15540 132 aa11.75□□□□□ -0.53
CCDC88C-204ENST00000389857 GPR12P47775 334 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms