RNA–Protein interactions for RNA: ENST00000376634.8

VPS13A-204, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 10,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-204ENST00000376634 GJC3Q8NFK1 279 aa11.52□□□□□ -0.57
VPS13A-204ENST00000376634 SLC38A5Q8WUX1 472 aa11.52□□□□□ -0.57
VPS13A-204ENST00000376634 SORT1Q99523 831 aa11.52□□□□□ -0.57
VPS13A-204ENST00000376634 NTN4Q9HB63 628 aa11.52□□□□□ -0.57
VPS13A-204ENST00000376634 DNMT3BQ9UBC3 853 aaKnown RBP11.52□□□□□ -0.57
VPS13A-204ENST00000376634 LOC105378220A0A1B0GUY1 285 aaPredicted RBP11.52□□□□□ -0.57
VPS13A-204ENST00000376634 M0QZQ0 153 aa11.52□□□□□ -0.57
VPS13A-204ENST00000376634 HOXA11P31270 313 aaPredicted RBP11.52□□□□□ -0.57
VPS13A-204ENST00000376634 VAMP3Q15836 100 aa11.52□□□□□ -0.57
VPS13A-204ENST00000376634 TFAP2EQ6VUC0 442 aa11.52□□□□□ -0.57
VPS13A-204ENST00000376634 OR6V1Q8N148 313 aa11.52□□□□□ -0.57
VPS13A-204ENST00000376634 MED30Q96HR3 178 aa11.52□□□□□ -0.57
VPS13A-204ENST00000376634 GPR45Q9Y5Y3 372 aa11.52□□□□□ -0.57
VPS13A-204ENST00000376634 SERTM2A0A1B0GWG4 89 aa11.52□□□□□ -0.57
VPS13A-204ENST00000376634 PSMB1P20618 241 aaKnown RBP11.52□□□□□ -0.57
VPS13A-204ENST00000376634 GPX3P22352 226 aa11.52□□□□□ -0.57
VPS13A-204ENST00000376634 RPS23P62266 143 aaKnown RBP11.52□□□□□ -0.57
VPS13A-204ENST00000376634 ERV3-1Q14264 604 aa11.52□□□□□ -0.57
VPS13A-204ENST00000376634 CLLU1OSQ5K130 101 aa11.52□□□□□ -0.57
VPS13A-204ENST00000376634 PM20D1Q6GTS8 502 aa11.52□□□□□ -0.57
VPS13A-204ENST00000376634 ZADH2Q8N4Q0 377 aa11.52□□□□□ -0.57
VPS13A-204ENST00000376634 ASB11Q8WXH4 323 aa11.52□□□□□ -0.57
VPS13A-204ENST00000376634 TRAV36DV7A0A075B6V5 113 aa11.51□□□□□ -0.57
VPS13A-204ENST00000376634 B3GALNT1O75752 331 aa11.51□□□□□ -0.57
VPS13A-204ENST00000376634 SCO1O75880 301 aa11.51□□□□□ -0.57
VPS13A-204ENST00000376634 SCG5P05408 212 aa11.51□□□□□ -0.57
VPS13A-204ENST00000376634 GDNFP39905 211 aa11.51□□□□□ -0.57
VPS13A-204ENST00000376634 FOXA1P55317 472 aa11.51□□□□□ -0.57
VPS13A-204ENST00000376634 RPS25P62851 125 aaKnown RBP11.51□□□□□ -0.57
VPS13A-204ENST00000376634 Q499Y3 187 aa11.51□□□□□ -0.57
VPS13A-204ENST00000376634 DLK2Q6UY11 383 aa11.51□□□□□ -0.57
VPS13A-204ENST00000376634 DPY19L2P2Q6ZN68 376 aa11.51□□□□□ -0.57
VPS13A-204ENST00000376634 CCDC74BQ96LY2 380 aa11.51□□□□□ -0.57
VPS13A-204ENST00000376634 MRPL22Q9NWU5 206 aaKnown RBP11.51□□□□□ -0.57
VPS13A-204ENST00000376634 OR5I1Q13606 314 aa11.51□□□□□ -0.57
VPS13A-204ENST00000376634 KCNRGQ8N5I3 272 aa11.51□□□□□ -0.57
VPS13A-204ENST00000376634 C20orf24Q9BUV8 137 aa11.51□□□□□ -0.57
VPS13A-204ENST00000376634 FBXL2Q9UKC9 423 aa11.51□□□□□ -0.57
VPS13A-204ENST00000376634 HS3ST1O14792 307 aa11.51□□□□□ -0.57
VPS13A-204ENST00000376634 TOX4O94842 621 aa11.51□□□□□ -0.57
VPS13A-204ENST00000376634 EDN1P05305 212 aa11.51□□□□□ -0.57
VPS13A-204ENST00000376634 MRPL19P49406 292 aaKnown RBP11.51□□□□□ -0.57
VPS13A-204ENST00000376634 PRSS35Q8N3Z0 413 aa11.51□□□□□ -0.57
VPS13A-204ENST00000376634 LINC00597Q9H2U6 94 aa11.51□□□□□ -0.57
VPS13A-204ENST00000376634 PLEKHF2Q9H8W4 249 aa11.51□□□□□ -0.57
VPS13A-204ENST00000376634 HSFX1Q9UBD0 423 aa11.51□□□□□ -0.57
VPS13A-204ENST00000376634 ZNF816-ZNF321PA0A0X1KG74 233 aa11.51□□□□□ -0.57
VPS13A-204ENST00000376634 PVRP15151 417 aa11.51□□□□□ -0.57
VPS13A-204ENST00000376634 DUSP1P28562 367 aa11.51□□□□□ -0.57
VPS13A-204ENST00000376634 RANP62826 216 aaKnown RBP11.51□□□□□ -0.57
VPS13A-204ENST00000376634 ZNF321PQ8N8H1 164 aa11.51□□□□□ -0.57
VPS13A-204ENST00000376634 FBXO27Q8NI29 283 aa11.51□□□□□ -0.57
VPS13A-204ENST00000376634 SLC25A21Q9BQT8 299 aaPredicted RBP11.51□□□□□ -0.57
VPS13A-204ENST00000376634 SLC22A11Q9NSA0 550 aa11.51□□□□□ -0.57
VPS13A-204ENST00000376634 USP54Q70EL1 1684 aa11.51□□□□□ -0.57
VPS13A-204ENST00000376634 ANKUB1A6NFN9 424 aa11.51□□□□□ -0.57
VPS13A-204ENST00000376634 PMS2P2O95744 297 aa11.51□□□□□ -0.57
VPS13A-204ENST00000376634 SNRPBP14678 240 aaKnown RBP11.51□□□□□ -0.57
VPS13A-204ENST00000376634 BMI1P35226 326 aa11.51□□□□□ -0.57
VPS13A-204ENST00000376634 ARSGQ96EG1 525 aa11.51□□□□□ -0.57
VPS13A-204ENST00000376634 PKMYT1Q99640 499 aa11.51□□□□□ -0.57
VPS13A-204ENST00000376634 OBP2AQ9NY56 170 aa11.51□□□□□ -0.57
VPS13A-204ENST00000376634 SIX6O95475 246 aa11.51□□□□□ -0.57
VPS13A-204ENST00000376634 GRPP07492 148 aa11.51□□□□□ -0.57
VPS13A-204ENST00000376634 PDZD11Q5EBL8 140 aa11.51□□□□□ -0.57
VPS13A-204ENST00000376634 MARCH8Q5T0T0 291 aa11.51□□□□□ -0.57
VPS13A-204ENST00000376634 NKAIN2Q5VXU1 208 aa11.51□□□□□ -0.57
VPS13A-204ENST00000376634 OR13C9Q8NGT0 318 aa11.51□□□□□ -0.57
VPS13A-204ENST00000376634 GHSRQ92847 366 aa11.51□□□□□ -0.57
VPS13A-204ENST00000376634 C10orf90Q96M02 699 aa11.51□□□□□ -0.57
VPS13A-204ENST00000376634 PCYT2Q99447 389 aa11.51□□□□□ -0.57
VPS13A-204ENST00000376634 LIN7CQ9NUP9 197 aaKnown RBP11.51□□□□□ -0.57
VPS13A-204ENST00000376634 TNFSF8P32971 234 aa11.51□□□□□ -0.57
VPS13A-204ENST00000376634 GTDC1Q4AE62 458 aa11.51□□□□□ -0.57
VPS13A-204ENST00000376634 CORINQ9Y5Q5 1042 aa11.51□□□□□ -0.57
VPS13A-204ENST00000376634 PSMB5P28074 263 aa11.51□□□□□ -0.57
VPS13A-204ENST00000376634 CYB561P49447 251 aa11.51□□□□□ -0.57
VPS13A-204ENST00000376634 PLK5Q496M5 336 aa11.51□□□□□ -0.57
VPS13A-204ENST00000376634 MED25Q71SY5 747 aa11.51□□□□□ -0.57
VPS13A-204ENST00000376634 OR2G3Q8NGZ4 309 aa11.51□□□□□ -0.57
VPS13A-204ENST00000376634 APH1AQ96BI3 265 aa11.51□□□□□ -0.57
VPS13A-204ENST00000376634 ZNF775Q96BV0 537 aaPredicted RBP11.51□□□□□ -0.57
VPS13A-204ENST00000376634 SLC46A1Q96NT5 459 aa11.51□□□□□ -0.57
VPS13A-204ENST00000376634 TCRBV3S1A0A5B6 114 aa11.5□□□□□ -0.57
VPS13A-204ENST00000376634 SORBS2O94875 1100 aaKnown RBP11.5□□□□□ -0.57
VPS13A-204ENST00000376634 CASP3P42574 277 aa11.5□□□□□ -0.57
VPS13A-204ENST00000376634 IL10RAQ13651 578 aa11.5□□□□□ -0.57
VPS13A-204ENST00000376634 PIWIL3Q7Z3Z3 882 aaKnown RBP11.5□□□□□ -0.57
VPS13A-204ENST00000376634 HLA-CQ95604 372 aa11.5□□□□□ -0.57
VPS13A-204ENST00000376634 FAM3DQ96BQ1 224 aa11.5□□□□□ -0.57
VPS13A-204ENST00000376634 NCBP2LA6PVI3 153 aaKnown RBP11.5□□□□□ -0.57
VPS13A-204ENST00000376634 ZNF207O43670 478 aaKnown RBP11.5□□□□□ -0.57
VPS13A-204ENST00000376634 ACKR3P25106 362 aa11.5□□□□□ -0.57
VPS13A-204ENST00000376634 TSPAN31Q12999 210 aa11.5□□□□□ -0.57
VPS13A-204ENST00000376634 KCTD11Q693B1 232 aa11.5□□□□□ -0.57
VPS13A-204ENST00000376634 MFSD12Q6NUT3 480 aa11.5□□□□□ -0.57
VPS13A-204ENST00000376634 FAM122BQ7Z309 247 aa11.5□□□□□ -0.57
VPS13A-204ENST00000376634 LMNTD1Q8N9Z9 388 aa11.5□□□□□ -0.57
VPS13A-204ENST00000376634 OR4F5Q8NH21 305 aa11.5□□□□□ -0.57
VPS13A-204ENST00000376634 OR4F4Q96R69 305 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms