RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 SLC25A18Q9H1K4 315 aa13.97□□□□□ -0.17
CCDC40-202ENST00000374876 KLHDC2Q9Y2U9 406 aa13.97□□□□□ -0.17
CCDC40-202ENST00000374876 LOC102723996A0A087X1L8 192 aa13.97□□□□□ -0.17
CCDC40-202ENST00000374876 IGHV1-45A0A0A0MS14 117 aa13.97□□□□□ -0.17
CCDC40-202ENST00000374876 PIN1P1O15428 100 aa13.97□□□□□ -0.17
CCDC40-202ENST00000374876 BGLAPP02818 100 aa13.97□□□□□ -0.17
CCDC40-202ENST00000374876 PRKCAP17252 672 aa13.97□□□□□ -0.17
CCDC40-202ENST00000374876 SRP9P49458 86 aaKnown RBP13.97□□□□□ -0.17
CCDC40-202ENST00000374876 MMP15P51511 669 aa13.97□□□□□ -0.17
CCDC40-202ENST00000374876 PNLIPRP2P54317 469 aa13.97□□□□□ -0.17
CCDC40-202ENST00000374876 RAB25P57735 213 aa13.97□□□□□ -0.17
CCDC40-202ENST00000374876 MRPL28Q13084 256 aaKnown RBP13.97□□□□□ -0.17
CCDC40-202ENST00000374876 PCOLCEQ15113 449 aa13.97□□□□□ -0.17
CCDC40-202ENST00000374876 NTRK2Q16620 822 aa13.97□□□□□ -0.17
CCDC40-202ENST00000374876 NDUFA5Q16718 116 aa13.97□□□□□ -0.17
CCDC40-202ENST00000374876 UBE2NLQ5JXB2 153 aa13.97□□□□□ -0.17
CCDC40-202ENST00000374876 NDUFAF7Q7L592 441 aa13.97□□□□□ -0.17
CCDC40-202ENST00000374876 MAMDC2Q7Z304 686 aaPredicted RBP13.97□□□□□ -0.17
CCDC40-202ENST00000374876 CDC20BQ86Y33 519 aa13.97□□□□□ -0.17
CCDC40-202ENST00000374876 TCTE3Q8IZS6 198 aa13.97□□□□□ -0.17
CCDC40-202ENST00000374876 TOMM5Q8N4H5 51 aa13.97□□□□□ -0.17
CCDC40-202ENST00000374876 ZNF433Q8N7K0 673 aaPredicted RBP13.97□□□□□ -0.17
CCDC40-202ENST00000374876 LGALS14Q8TCE9 139 aa13.97□□□□□ -0.17
CCDC40-202ENST00000374876 HAVCR2Q8TDQ0 301 aa13.97□□□□□ -0.17
CCDC40-202ENST00000374876 HSD17B8Q92506 261 aa13.97□□□□□ -0.17
CCDC40-202ENST00000374876 ORAI1Q96D31 301 aa13.97□□□□□ -0.17
CCDC40-202ENST00000374876 DERL3Q96Q80 235 aa13.97□□□□□ -0.17
CCDC40-202ENST00000374876 SYT4Q9H2B2 425 aa13.97□□□□□ -0.17
CCDC40-202ENST00000374876 MRM2Q9UI43 246 aaKnown RBP13.97□□□□□ -0.17
CCDC40-202ENST00000374876 IKZF2Q9UKS7 526 aa13.97□□□□□ -0.17
CCDC40-202ENST00000374876 CAMK2AQ9UQM7 478 aa13.97□□□□□ -0.17
CCDC40-202ENST00000374876 KMT2BQ9UMN6 2715 aaPredicted RBP13.96□□□□□ -0.17
CCDC40-202ENST00000374876 MPDZO75970 2070 aa13.96□□□□□ -0.17
CCDC40-202ENST00000374876 CACNA1GO43497 2377 aa13.96□□□□□ -0.17
CCDC40-202ENST00000374876 NSG1A0A0A6YYJ2 146 aa13.96□□□□□ -0.17
CCDC40-202ENST00000374876 ANKRD61A6NGH8 418 aa13.96□□□□□ -0.17
CCDC40-202ENST00000374876 XKRYO14609 159 aa13.96□□□□□ -0.17
CCDC40-202ENST00000374876 ARHGEF9O43307 516 aa13.96□□□□□ -0.17
CCDC40-202ENST00000374876 SCO2O43819 266 aa13.96□□□□□ -0.17
CCDC40-202ENST00000374876 ITGA10O75578 1167 aa13.96□□□□□ -0.17
CCDC40-202ENST00000374876 ITGB2P05107 769 aa13.96□□□□□ -0.17
CCDC40-202ENST00000374876 CELA2AP08217 269 aa13.96□□□□□ -0.17
CCDC40-202ENST00000374876 CD3GP09693 182 aa13.96□□□□□ -0.17
CCDC40-202ENST00000374876 Q0VFX4 171 aa13.96□□□□□ -0.17
CCDC40-202ENST00000374876 CDK10Q15131 360 aa13.96□□□□□ -0.17
CCDC40-202ENST00000374876 PLA1AQ53H76 456 aa13.96□□□□□ -0.17
CCDC40-202ENST00000374876 RNASE12Q5GAN4 147 aaKnown RBP13.96□□□□□ -0.17
CCDC40-202ENST00000374876 C1QL3Q5VWW1 255 aa13.96□□□□□ -0.17
CCDC40-202ENST00000374876 LIPNQ5VXI9 398 aa13.96□□□□□ -0.17
CCDC40-202ENST00000374876 ESPNLQ6ZVH7 1005 aa13.96□□□□□ -0.17
CCDC40-202ENST00000374876 SLC7A5P1Q8MH63 180 aa13.96□□□□□ -0.17
CCDC40-202ENST00000374876 OR6N2Q8NGY6 317 aa13.96□□□□□ -0.17
CCDC40-202ENST00000374876 OR5AK2Q8NH90 309 aa13.96□□□□□ -0.17
CCDC40-202ENST00000374876 RGP1Q92546 391 aaPredicted RBP13.96□□□□□ -0.17
CCDC40-202ENST00000374876 TTC9Q92623 222 aa13.96□□□□□ -0.17
CCDC40-202ENST00000374876 SLC25A36Q96CQ1 311 aa13.96□□□□□ -0.17
CCDC40-202ENST00000374876 RNF170Q96K19 258 aa13.96□□□□□ -0.17
CCDC40-202ENST00000374876 FER1L6-AS2Q96M78 137 aa13.96□□□□□ -0.17
CCDC40-202ENST00000374876 KLHL15Q96M94 604 aa13.96□□□□□ -0.17
CCDC40-202ENST00000374876 MNTQ99583 582 aa13.96□□□□□ -0.17
CCDC40-202ENST00000374876 WDR77Q9BQA1 342 aaPredicted RBP13.96□□□□□ -0.17
CCDC40-202ENST00000374876 WDR76Q9H967 626 aa13.96□□□□□ -0.17
CCDC40-202ENST00000374876 PAQR5Q9NXK6 330 aaPredicted RBP13.96□□□□□ -0.17
CCDC40-202ENST00000374876 ING3Q9NXR8 418 aa13.96□□□□□ -0.17
CCDC40-202ENST00000374876 C19orf25Q9UFG5 118 aaPredicted RBP13.96□□□□□ -0.17
CCDC40-202ENST00000374876 OR6C70A6NIJ9 312 aa13.95□□□□□ -0.18
CCDC40-202ENST00000374876 IFITM5A6NNB3 132 aa13.95□□□□□ -0.18
CCDC40-202ENST00000374876 C11orf98E9PRG8 122 aa13.95□□□□□ -0.18
CCDC40-202ENST00000374876 UPK3AO75631 287 aa13.95□□□□□ -0.18
CCDC40-202ENST00000374876 FAM87AP0C7U9 286 aa13.95□□□□□ -0.18
CCDC40-202ENST00000374876 EVI2BP34910 448 aa13.95□□□□□ -0.18
CCDC40-202ENST00000374876 POLR2HP52434 150 aaKnown RBP13.95□□□□□ -0.18
CCDC40-202ENST00000374876 RRAS2P62070 204 aaPredicted RBP13.95□□□□□ -0.18
CCDC40-202ENST00000374876 BTG1P62324 171 aa13.95□□□□□ -0.18
CCDC40-202ENST00000374876 ALKBH1Q13686 389 aaKnown RBP13.95□□□□□ -0.18
CCDC40-202ENST00000374876 SLC36A2Q495M3 483 aa13.95□□□□□ -0.18
CCDC40-202ENST00000374876 HES5Q5TA89 166 aa13.95□□□□□ -0.18
CCDC40-202ENST00000374876 EEF1A1P5Q5VTE0 462 aa13.95□□□□□ -0.18
CCDC40-202ENST00000374876 TIGD3Q6B0B8 471 aa13.95□□□□□ -0.18
CCDC40-202ENST00000374876 CLEC1AQ8NC01 280 aa13.95□□□□□ -0.18
CCDC40-202ENST00000374876 YIPF5Q969M3 257 aa13.95□□□□□ -0.18
CCDC40-202ENST00000374876 RNF166Q96A37 237 aaPredicted RBP13.95□□□□□ -0.18
CCDC40-202ENST00000374876 CMTM3Q96MX0 182 aa13.95□□□□□ -0.18
CCDC40-202ENST00000374876 ZNF700Q9H0M5 742 aa13.95□□□□□ -0.18
CCDC40-202ENST00000374876 SLITRK2Q9H156 845 aa13.95□□□□□ -0.18
CCDC40-202ENST00000374876 TSPAN10Q9H1Z9 355 aaPredicted RBP13.95□□□□□ -0.18
CCDC40-202ENST00000374876 TMEM165Q9HC07 324 aa13.95□□□□□ -0.18
CCDC40-202ENST00000374876 TAS2R5Q9NYW4 299 aa13.95□□□□□ -0.18
CCDC40-202ENST00000374876 TMEM14AQ9Y6G1 99 aa13.95□□□□□ -0.18
CCDC40-202ENST00000374876 AIPO00170 330 aa13.95□□□□□ -0.18
CCDC40-202ENST00000374876 SUSD5O60279 629 aa13.95□□□□□ -0.18
CCDC40-202ENST00000374876 MT-ATP6P00846 226 aa13.95□□□□□ -0.18
CCDC40-202ENST00000374876 CYC1P08574 325 aa13.95□□□□□ -0.18
CCDC40-202ENST00000374876 TCEA1P23193 301 aaKnown RBP13.95□□□□□ -0.18
CCDC40-202ENST00000374876 MAPK3P27361 379 aaPredicted RBP13.95□□□□□ -0.18
CCDC40-202ENST00000374876 MAGEB1P43366 347 aa13.95□□□□□ -0.18
CCDC40-202ENST00000374876 P2RX1P51575 399 aa13.95□□□□□ -0.18
CCDC40-202ENST00000374876 RRADP55042 308 aa13.95□□□□□ -0.18
CCDC40-202ENST00000374876 DGCR2P98153 550 aa13.95□□□□□ -0.18
CCDC40-202ENST00000374876 PAPD4Q6PIY7 484 aaKnown RBP13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms