RNA–Protein interactions for RNA: ENST00000361866.7

COL6A1-201, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL6A1, Length 4,238 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-201ENST00000361866 SHISA3A0PJX4 238 aa12.68□□□□□ -0.38
COL6A1-201ENST00000361866 HEXBP07686 556 aa12.68□□□□□ -0.38
COL6A1-201ENST00000361866 CALCBP10092 127 aa12.68□□□□□ -0.38
COL6A1-201ENST00000361866 NAT2P11245 290 aa12.68□□□□□ -0.38
COL6A1-201ENST00000361866 SLC26A5P58743 744 aa12.68□□□□□ -0.38
COL6A1-201ENST00000361866 RPL18Q07020 188 aaKnown RBP12.68□□□□□ -0.38
COL6A1-201ENST00000361866 PMPCAQ10713 525 aa12.68□□□□□ -0.38
COL6A1-201ENST00000361866 MLF2Q15773 248 aaPredicted RBP12.68□□□□□ -0.38
COL6A1-201ENST00000361866 PLA1AQ53H76 456 aa12.68□□□□□ -0.38
COL6A1-201ENST00000361866 IL17RCQ8NAC3 791 aa12.68□□□□□ -0.38
COL6A1-201ENST00000361866 HSD17B8Q92506 261 aa12.68□□□□□ -0.38
COL6A1-201ENST00000361866 HOXB13Q92826 284 aaPredicted RBP12.68□□□□□ -0.38
COL6A1-201ENST00000361866 SULT4A1Q9BR01 284 aa12.68□□□□□ -0.38
COL6A1-201ENST00000361866 ZNF442Q9H7R0 627 aa12.68□□□□□ -0.38
COL6A1-201ENST00000361866 PLEKHJ1Q9NW61 149 aa12.68□□□□□ -0.38
COL6A1-201ENST00000361866 OR5V1Q9UGF6 321 aa12.68□□□□□ -0.38
COL6A1-201ENST00000361866 EXOGQ9Y2C4 368 aaKnown RBP12.68□□□□□ -0.38
COL6A1-201ENST00000361866 A0A0B4J293 547 aa12.68□□□□□ -0.38
COL6A1-201ENST00000361866 EFCAB7A8K855 629 aa12.68□□□□□ -0.38
COL6A1-201ENST00000361866 ZNF43P17038 809 aa12.68□□□□□ -0.38
COL6A1-201ENST00000361866 PDZK1IP1Q13113 114 aa12.68□□□□□ -0.38
COL6A1-201ENST00000361866 ELOCQ15369 112 aa12.68□□□□□ -0.38
COL6A1-201ENST00000361866 LRRTM1Q86UE6 522 aa12.68□□□□□ -0.38
COL6A1-201ENST00000361866 FNDC9Q8TBE3 224 aa12.68□□□□□ -0.38
COL6A1-201ENST00000361866 ZDHHC12Q96GR4 267 aa12.68□□□□□ -0.38
COL6A1-201ENST00000361866 ZC3HAV1LQ96H79 300 aaKnown RBP12.68□□□□□ -0.38
COL6A1-201ENST00000361866 STACQ99469 402 aa12.68□□□□□ -0.38
COL6A1-201ENST00000361866 NTMQ9P121 344 aa12.68□□□□□ -0.38
COL6A1-201ENST00000361866 UTS2O95399 124 aa12.67□□□□□ -0.38
COL6A1-201ENST00000361866 RIPPLY1Q0D2K3 151 aa12.67□□□□□ -0.38
COL6A1-201ENST00000361866 B3GNTL1Q67FW5 361 aaPredicted RBP12.67□□□□□ -0.38
COL6A1-201ENST00000361866 DCXRQ7Z4W1 244 aa12.67□□□□□ -0.38
COL6A1-201ENST00000361866 GKN2Q86XP6 184 aa12.67□□□□□ -0.38
COL6A1-201ENST00000361866 OR5B2Q96R09 309 aa12.67□□□□□ -0.38
COL6A1-201ENST00000361866 CRB3Q9BUF7 120 aa12.67□□□□□ -0.38
COL6A1-201ENST00000361866 OR11A1Q9GZK7 315 aa12.67□□□□□ -0.38
COL6A1-201ENST00000361866 DZANK1Q9NVP4 752 aa12.67□□□□□ -0.38
COL6A1-201ENST00000361866 HSPA12AO43301 675 aa12.67□□□□□ -0.38
COL6A1-201ENST00000361866 SUSD5O60279 629 aa12.67□□□□□ -0.38
COL6A1-201ENST00000361866 TGM6O95932 706 aa12.67□□□□□ -0.38
COL6A1-201ENST00000361866 RRASP10301 218 aa12.67□□□□□ -0.38
COL6A1-201ENST00000361866 ST6GAL1P15907 406 aa12.67□□□□□ -0.38
COL6A1-201ENST00000361866 ZNF85Q03923 595 aa12.67□□□□□ -0.38
COL6A1-201ENST00000361866 CAMK2DQ13557 499 aa12.67□□□□□ -0.38
COL6A1-201ENST00000361866 RHEBQ15382 184 aa12.67□□□□□ -0.38
COL6A1-201ENST00000361866 SGCBQ16585 318 aa12.67□□□□□ -0.38
COL6A1-201ENST00000361866 TUSC1Q2TAM9 212 aa12.67□□□□□ -0.38
COL6A1-201ENST00000361866 TMEM81Q6P7N7 255 aa12.67□□□□□ -0.38
COL6A1-201ENST00000361866 SGPP2Q8IWX5 399 aa12.67□□□□□ -0.38
COL6A1-201ENST00000361866 C16orf52Q8NHV5 167 aa12.67□□□□□ -0.38
COL6A1-201ENST00000361866 HAVCR2Q8TDQ0 301 aa12.67□□□□□ -0.38
COL6A1-201ENST00000361866 SCMH1Q96GD3 660 aa12.67□□□□□ -0.38
COL6A1-201ENST00000361866 SORCS2Q96PQ0 1159 aa12.67□□□□□ -0.38
COL6A1-201ENST00000361866 PTGES2Q9H7Z7 377 aa12.67□□□□□ -0.38
COL6A1-201ENST00000361866 RAB19A4D1S5 217 aa12.67□□□□□ -0.38
COL6A1-201ENST00000361866 MCRIP1C9JLW8 97 aa12.67□□□□□ -0.38
COL6A1-201ENST00000361866 CTSVO60911 334 aa12.67□□□□□ -0.38
COL6A1-201ENST00000361866 TRAPPC6AO75865 159 aa12.67□□□□□ -0.38
COL6A1-201ENST00000361866 ATG12O94817 140 aa12.67□□□□□ -0.38
COL6A1-201ENST00000361866 AGFG1P52594 562 aaKnown RBP12.67□□□□□ -0.38
COL6A1-201ENST00000361866 PPP2CBP62714 309 aa12.67□□□□□ -0.38
COL6A1-201ENST00000361866 PPP2CAP67775 309 aa12.67□□□□□ -0.38
COL6A1-201ENST00000361866 HSD11B2P80365 405 aa12.67□□□□□ -0.38
COL6A1-201ENST00000361866 TCTN1Q2MV58 587 aa12.67□□□□□ -0.38
COL6A1-201ENST00000361866 ADAM5Q6NVV9 412 aa12.67□□□□□ -0.38
COL6A1-201ENST00000361866 TMPRSS11FQ6ZWK6 438 aa12.67□□□□□ -0.38
COL6A1-201ENST00000361866 ANGPTL5Q86XS5 388 aa12.67□□□□□ -0.38
COL6A1-201ENST00000361866 DND1Q8IYX4 353 aaKnown RBP12.67□□□□□ -0.38
COL6A1-201ENST00000361866 SLC22A8Q8TCC7 542 aa12.67□□□□□ -0.38
COL6A1-201ENST00000361866 DCBLD2Q96PD2 775 aa12.67□□□□□ -0.38
COL6A1-201ENST00000361866 CBX7O95931 251 aa12.67□□□□□ -0.38
COL6A1-201ENST00000361866 AKR1C3P42330 323 aa12.67□□□□□ -0.38
COL6A1-201ENST00000361866 C14orf28Q4W4Y0 310 aa12.67□□□□□ -0.38
COL6A1-201ENST00000361866 SLC35D3Q5M8T2 416 aa12.67□□□□□ -0.38
COL6A1-201ENST00000361866 FAM122BQ7Z309 247 aa12.67□□□□□ -0.38
COL6A1-201ENST00000361866 CDH26Q8IXH8 852 aa12.67□□□□□ -0.38
COL6A1-201ENST00000361866 RNF141Q8WVD5 230 aa12.67□□□□□ -0.38
COL6A1-201ENST00000361866 SLCO1C1Q9NYB5 712 aa12.67□□□□□ -0.38
COL6A1-201ENST00000361866 MRPS2Q9Y399 296 aaKnown RBP12.67□□□□□ -0.38
COL6A1-201ENST00000361866 SDCBPO00560 298 aaPredicted RBP12.66□□□□□ -0.38
COL6A1-201ENST00000361866 HCRTR1O43613 425 aa12.66□□□□□ -0.38
COL6A1-201ENST00000361866 ANKRD34CP0C6C1 535 aa12.66□□□□□ -0.38
COL6A1-201ENST00000361866 OMGP23515 440 aa12.66□□□□□ -0.38
COL6A1-201ENST00000361866 LIMS1P48059 325 aa12.66□□□□□ -0.38
COL6A1-201ENST00000361866 BAMBIQ13145 260 aa12.66□□□□□ -0.38
COL6A1-201ENST00000361866 MLC1Q15049 377 aa12.66□□□□□ -0.38
COL6A1-201ENST00000361866 RAB11FIP2Q7L804 512 aa12.66□□□□□ -0.38
COL6A1-201ENST00000361866 COMTD1Q86VU5 262 aa12.66□□□□□ -0.38
COL6A1-201ENST00000361866 OR1J2Q8NGS2 313 aa12.66□□□□□ -0.38
COL6A1-201ENST00000361866 RAB3CQ96E17 227 aa12.66□□□□□ -0.38
COL6A1-201ENST00000361866 ALKBH4Q9NXW9 302 aa12.66□□□□□ -0.38
COL6A1-201ENST00000361866 CSAG2Q9Y5P2 127 aa12.66□□□□□ -0.38
COL6A1-201ENST00000361866 PUS1Q9Y606 427 aaKnown RBP eCLIP12.66□□□□□ -0.38
COL6A1-201ENST00000361866 SLC22A23A1A5C7 686 aa12.66□□□□□ -0.38
COL6A1-201ENST00000361866 SNRPGP15A8MWD9 76 aa12.66□□□□□ -0.38
COL6A1-201ENST00000361866 BRINP1O60477 761 aa12.66□□□□□ -0.38
COL6A1-201ENST00000361866 CD80P33681 288 aa12.66□□□□□ -0.38
COL6A1-201ENST00000361866 SLC6A8P48029 635 aa12.66□□□□□ -0.38
COL6A1-201ENST00000361866 UEVLDQ8IX04 471 aa12.66□□□□□ -0.38
COL6A1-201ENST00000361866 ASB16Q96NS5 453 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms