RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 PAK1IP1Q9NWT1 392 aaPredicted RBP8.16□□□□□ -1.1
UPF2-202ENST00000357604 HIF3AQ9Y2N7 669 aa8.16□□□□□ -1.1
UPF2-202ENST00000357604 FLVCR1Q9Y5Y0 555 aa8.16□□□□□ -1.1
UPF2-202ENST00000357604 SMIM31A0A1B0GVY4 71 aa8.16□□□□□ -1.1
UPF2-202ENST00000357604 hCG_1807616A0A1W2PRN6 198 aa8.16□□□□□ -1.1
UPF2-202ENST00000357604 NPIPB13A6NJU9 1138 aa8.16□□□□□ -1.1
UPF2-202ENST00000357604 NPIPB4C9JG80 1138 aa8.16□□□□□ -1.1
UPF2-202ENST00000357604 OR2T7P0C7T2 308 aa8.16□□□□□ -1.1
UPF2-202ENST00000357604 STOMP27105 288 aa8.16□□□□□ -1.1
UPF2-202ENST00000357604 SUCLG1P53597 346 aaKnown RBP8.16□□□□□ -1.1
UPF2-202ENST00000357604 LSM6P62312 80 aaKnown RBP8.16□□□□□ -1.1
UPF2-202ENST00000357604 TIMM23BQ5SRD1 257 aa8.16□□□□□ -1.1
UPF2-202ENST00000357604 ZNF684Q5T5D7 378 aa8.16□□□□□ -1.1
UPF2-202ENST00000357604 C11orf88Q6PI97 169 aa8.16□□□□□ -1.1
UPF2-202ENST00000357604 OR2T27Q8NH04 317 aa8.16□□□□□ -1.1
UPF2-202ENST00000357604 OR1F12Q8NHA8 337 aa8.16□□□□□ -1.1
UPF2-202ENST00000357604 RAB39BQ96DA2 213 aa8.16□□□□□ -1.1
UPF2-202ENST00000357604 TSPAN32Q96QS1 320 aa8.16□□□□□ -1.1
UPF2-202ENST00000357604 MRPS26Q9BYN8 205 aaKnown RBP8.16□□□□□ -1.1
UPF2-202ENST00000357604 FAM118AQ9NWS6 357 aa8.16□□□□□ -1.1
UPF2-202ENST00000357604 CSTBP04080 98 aaKnown RBP8.16□□□□□ -1.1
UPF2-202ENST00000357604 MAKP20794 623 aa8.16□□□□□ -1.1
UPF2-202ENST00000357604 TTKP33981 857 aa8.16□□□□□ -1.1
UPF2-202ENST00000357604 NRN1LQ496H8 165 aa8.16□□□□□ -1.1
UPF2-202ENST00000357604 EXOSC6Q5RKV6 272 aaKnown RBP8.16□□□□□ -1.1
UPF2-202ENST00000357604 LRFN4Q6PJG9 635 aa8.16□□□□□ -1.1
UPF2-202ENST00000357604 SLC37A3Q8NCC5 494 aa8.16□□□□□ -1.1
UPF2-202ENST00000357604 SYNPRQ8TBG9 265 aa8.16□□□□□ -1.1
UPF2-202ENST00000357604 FBXW5Q969U6 566 aa8.16□□□□□ -1.1
UPF2-202ENST00000357604 PLK3Q9H4B4 646 aa8.16□□□□□ -1.1
UPF2-202ENST00000357604 CGGBP1Q9UFW8 167 aaPredicted RBP8.16□□□□□ -1.1
UPF2-202ENST00000357604 H7C1C5 153 aa8.16□□□□□ -1.1
UPF2-202ENST00000357604 SMAD9O15198 467 aaKnown RBP8.16□□□□□ -1.1
UPF2-202ENST00000357604 CSF3P09919 207 aa8.16□□□□□ -1.1
UPF2-202ENST00000357604 CBR1P16152 277 aa8.16□□□□□ -1.1
UPF2-202ENST00000357604 PEX2P28328 305 aa8.16□□□□□ -1.1
UPF2-202ENST00000357604 MAP2K3P46734 347 aa8.16□□□□□ -1.1
UPF2-202ENST00000357604 LCN6P62502 163 aa8.16□□□□□ -1.1
UPF2-202ENST00000357604 SLX4IPQ5VYV7 408 aa8.16□□□□□ -1.1
UPF2-202ENST00000357604 SIAH3Q8IW03 269 aa8.16□□□□□ -1.1
UPF2-202ENST00000357604 C9orf106Q8NAJ2 232 aa8.16□□□□□ -1.1
UPF2-202ENST00000357604 TMEM54Q969K7 222 aa8.16□□□□□ -1.1
UPF2-202ENST00000357604 PIGTQ969N2 578 aa8.16□□□□□ -1.1
UPF2-202ENST00000357604 FN3KRPQ9HA64 309 aa8.16□□□□□ -1.1
UPF2-202ENST00000357604 TMEM38BQ9NVV0 291 aa8.16□□□□□ -1.1
UPF2-202ENST00000357604 TMEM200CA6NKL6 621 aa8.15□□□□□ -1.1
UPF2-202ENST00000357604 ARL6IP5O75915 188 aa8.15□□□□□ -1.1
UPF2-202ENST00000357604 HTR1FP30939 366 aa8.15□□□□□ -1.1
UPF2-202ENST00000357604 THBS2P35442 1172 aa8.15□□□□□ -1.1
UPF2-202ENST00000357604 GIPRP48546 466 aa8.15□□□□□ -1.1
UPF2-202ENST00000357604 CX3CR1P49238 355 aa8.15□□□□□ -1.1
UPF2-202ENST00000357604 MVDP53602 400 aa8.15□□□□□ -1.1
UPF2-202ENST00000357604 ATP1B3P54709 279 aa8.15□□□□□ -1.1
UPF2-202ENST00000357604 GFRA1P56159 465 aa8.15□□□□□ -1.1
UPF2-202ENST00000357604 KLF3P57682 345 aaPredicted RBP8.15□□□□□ -1.1
UPF2-202ENST00000357604 RIN1Q13671 783 aa8.15□□□□□ -1.1
UPF2-202ENST00000357604 BLMHQ13867 455 aa8.15□□□□□ -1.1
UPF2-202ENST00000357604 TBRG1Q3YBR2 411 aa8.15□□□□□ -1.1
UPF2-202ENST00000357604 PLCXD3Q63HM9 321 aa8.15□□□□□ -1.1
UPF2-202ENST00000357604 DESI1Q6ICB0 168 aa8.15□□□□□ -1.1
UPF2-202ENST00000357604 FAM57BQ71RH2 274 aa8.15□□□□□ -1.1
UPF2-202ENST00000357604 ZNF367Q7RTV3 350 aa8.15□□□□□ -1.1
UPF2-202ENST00000357604 KDM8Q8N371 416 aa8.15□□□□□ -1.1
UPF2-202ENST00000357604 ZNF843Q8N446 348 aa8.15□□□□□ -1.1
UPF2-202ENST00000357604 LILRB4Q8NHJ6 448 aa8.15□□□□□ -1.1
UPF2-202ENST00000357604 AP3S1Q92572 193 aa8.15□□□□□ -1.1
UPF2-202ENST00000357604 ZMYND19Q96E35 227 aaPredicted RBP8.15□□□□□ -1.1
UPF2-202ENST00000357604 UCN2Q96RP3 112 aa8.15□□□□□ -1.1
UPF2-202ENST00000357604 SLC17A5Q9NRA2 495 aa8.15□□□□□ -1.1
UPF2-202ENST00000357604 FUOMA2VDF0 154 aa8.15□□□□□ -1.1
UPF2-202ENST00000357604 ARPC3O15145 178 aa8.15□□□□□ -1.1
UPF2-202ENST00000357604 LPLP06858 475 aa8.15□□□□□ -1.1
UPF2-202ENST00000357604 UBCP0CG48 685 aaKnown RBP8.15□□□□□ -1.1
UPF2-202ENST00000357604 EGR3Q06889 387 aa8.15□□□□□ -1.1
UPF2-202ENST00000357604 FOXO1Q12778 655 aa8.15□□□□□ -1.1
UPF2-202ENST00000357604 AHSA2Q719I0 299 aa8.15□□□□□ -1.1
UPF2-202ENST00000357604 LNX2Q8N448 690 aa8.15□□□□□ -1.1
UPF2-202ENST00000357604 ZNF610Q8N9Z0 462 aa8.15□□□□□ -1.1
UPF2-202ENST00000357604 OR52H1Q8NGJ2 320 aa8.15□□□□□ -1.1
UPF2-202ENST00000357604 Q96M85 177 aa8.15□□□□□ -1.1
UPF2-202ENST00000357604 TAAR6Q96RI8 345 aa8.15□□□□□ -1.1
UPF2-202ENST00000357604 IL20RAQ9UHF4 553 aa8.15□□□□□ -1.1
UPF2-202ENST00000357604 B9D1Q9UPM9 204 aa8.15□□□□□ -1.1
UPF2-202ENST00000357604 LRCH1Q9Y2L9 728 aa8.15□□□□□ -1.1
UPF2-202ENST00000357604 MAGEA2P43356 314 aa8.15□□□□□ -1.11
UPF2-202ENST00000357604 OR5AK2Q8NH90 309 aa8.15□□□□□ -1.11
UPF2-202ENST00000357604 ZNF671Q8TAW3 534 aa8.15□□□□□ -1.11
UPF2-202ENST00000357604 CAPSLQ8WWF8 208 aa8.15□□□□□ -1.11
UPF2-202ENST00000357604 S100PBPQ96BU1 408 aa8.15□□□□□ -1.11
UPF2-202ENST00000357604 ZG16BQ96DA0 208 aa8.15□□□□□ -1.11
UPF2-202ENST00000357604 CCDC120Q96HB5 630 aa8.15□□□□□ -1.11
UPF2-202ENST00000357604 OR2M2Q96R28 347 aa8.15□□□□□ -1.11
UPF2-202ENST00000357604 MESP1Q9BRJ9 268 aa8.15□□□□□ -1.11
UPF2-202ENST00000357604 DUSP13Q9UII6 198 aa8.15□□□□□ -1.11
UPF2-202ENST00000357604 OMPP47874 163 aa8.15□□□□□ -1.11
UPF2-202ENST00000357604 GABARAPL2P60520 117 aa8.15□□□□□ -1.11
UPF2-202ENST00000357604 SNRPGP62308 76 aaKnown RBP8.15□□□□□ -1.11
UPF2-202ENST00000357604 OR8G1Q15617 311 aa8.15□□□□□ -1.11
UPF2-202ENST00000357604 CTU2Q2VPK5 515 aaKnown RBP8.15□□□□□ -1.11
UPF2-202ENST00000357604 SFRP5Q5T4F7 317 aa8.15□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms