RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 GHDCQ8N2G8 530 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 SLC43A2Q8N370 569 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 TRIML2Q8N7C3 387 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 FAM98AQ8NCA5 519 aaKnown RBP2.04□□□□□ -2.08
VPS54-202ENST00000354504 SETD9Q8NE22 299 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 OR5H6Q8NGV6 325 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 OR10AC1Q8NH08 325 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 OR6S1Q8NH40 331 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 ZCCHC10Q8TBK6 192 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 SPRYD4Q8WW59 207 aaPredicted RBP2.04□□□□□ -2.08
VPS54-202ENST00000354504 IGFBPL1Q8WX77 278 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 EDAQ92838 391 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 BPIFA2Q96DR5 249 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 ABHD1Q96SE0 405 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 UNKLQ9H9P5 680 aaKnown RBP2.04□□□□□ -2.08
VPS54-202ENST00000354504 TBC1D17Q9HA65 648 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 SAP30LQ9HAJ7 183 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 CCNB1IP1Q9NPC3 277 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 POLE4Q9NR33 117 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 CYSLTR2Q9NS75 346 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 HCN3Q9P1Z3 774 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 CLCA3PQ9Y6N3 262 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 MED12Q93074 2177 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 A0A0A6YYD4 124 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 TRAV1-2A0A0B4J238 106 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 A0A0X1KG70 313 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 A0A1B0GTH9 108 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 A0A1B0GTI1 187 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 LOC102725191A0A1B0GVB3 256 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 KRTAP23-1A1A580 65 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 PINLYPA6NC86 204 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 SAGE2PA6NJ88 616 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 LRRC3CA6NJW4 275 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 H0YC42 278 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 PLPP3O14495 311 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 POLR1CO15160 346 aaPredicted RBP2.04□□□□□ -2.08
VPS54-202ENST00000354504 LAMTOR5O43504 91 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 GSTZ1O43708 216 aaPredicted RBP2.04□□□□□ -2.08
VPS54-202ENST00000354504 TLX2O43763 284 aaPredicted RBP2.04□□□□□ -2.08
VPS54-202ENST00000354504 ZIC3O60481 467 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 MPZL2O60487 215 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 LMX1BO60663 402 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 PRAMEF2O60811 474 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 SCAF4O95104 1147 aaKnown RBP2.04□□□□□ -2.08
VPS54-202ENST00000354504 DCNP07585 359 aaKnown RBP2.04□□□□□ -2.08
VPS54-202ENST00000354504 ZNF735P0CB33 412 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 CD59P13987 128 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 SPI1P17947 270 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 ATF1P18846 271 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 CCL1P22362 96 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 CPN2P22792 545 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 F8A1P23610 371 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 SLC6A1P30531 599 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 LCN1P31025 176 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 MTNR1AP48039 350 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 CSNK1EP49674 416 aaKnown RBP2.04□□□□□ -2.08
VPS54-202ENST00000354504 RAD23AP54725 363 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 ZNF121P58317 390 aaPredicted RBP2.04□□□□□ -2.08
VPS54-202ENST00000354504 SGCGQ13326 291 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 ITGADQ13349 1161 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 KRT33BQ14525 404 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 NDUFA9Q16795 377 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 ZNF181Q2M3W8 571 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 PLPPR5Q32ZL2 321 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 ZNF528Q3MIS6 628 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 ZNF404Q494X3 552 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 FCRLBQ6BAA4 426 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 SLC27A4Q6P1M0 643 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 DEF8Q6ZN54 512 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 PIP4P1Q86T03 277 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 KMT5CQ86Y97 462 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 SLC44A2Q8IWA5 706 aaPredicted RBP2.04□□□□□ -2.08
VPS54-202ENST00000354504 LINC00471Q8N535 108 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 DEFB119Q8N690 84 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 CAMKVQ8NCB2 501 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 OR8K3Q8NH51 312 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 C9orf43Q8TAL5 461 aaPredicted RBP2.04□□□□□ -2.08
VPS54-202ENST00000354504 SPPL2AQ8TCT8 520 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 XAGE5Q8WWM1 108 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 ASB10Q8WXI3 467 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 NPIPB3Q92617 1050 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 EXTL1Q92935 676 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 BORCS5Q969J3 196 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 YIPF5Q969M3 257 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 LYZL4Q96KX0 146 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 HS6ST2Q96MM7 605 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 PRR25Q96S07 402 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 CD180Q99467 661 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 MCHR1Q99705 422 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 SH3GL3Q99963 347 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 MND1Q9BWT6 205 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 GSDMCQ9BYG8 508 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 LAT2Q9GZY6 243 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 GHITMQ9H3K2 345 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 MIEF1Q9NQG6 463 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 CTPS2Q9NRF8 586 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 PCDHB16Q9NRJ7 776 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 AHSPQ9NZD4 102 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 SEC14L3Q9UDX4 400 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 GRIP1Q9Y3R0 1128 aa2.04□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms