RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 AKIRIN2Q53H80 203 aa6.15□□□□□ -1.43
VPS39-202ENST00000348544 SLC35D3Q5M8T2 416 aa6.15□□□□□ -1.43
VPS39-202ENST00000348544 FAM166AQ6J272 317 aa6.15□□□□□ -1.43
VPS39-202ENST00000348544 CORO6Q6QEF8 472 aa6.15□□□□□ -1.43
VPS39-202ENST00000348544 LINC00114Q6XXX2 140 aa6.15□□□□□ -1.43
VPS39-202ENST00000348544 BPIFB2Q8N4F0 458 aa6.15□□□□□ -1.43
VPS39-202ENST00000348544 C15orf54Q8N8G6 183 aa6.15□□□□□ -1.43
VPS39-202ENST00000348544 COX18Q8N8Q8 333 aa6.15□□□□□ -1.43
VPS39-202ENST00000348544 OR4S1Q8NGB4 309 aa6.15□□□□□ -1.43
VPS39-202ENST00000348544 OR4K17Q8NGC6 315 aa6.15□□□□□ -1.43
VPS39-202ENST00000348544 OR2G2Q8NGZ5 317 aa6.15□□□□□ -1.43
VPS39-202ENST00000348544 ZNF417Q8TAU3 575 aa6.15□□□□□ -1.43
VPS39-202ENST00000348544 FAM174AQ8TBP5 190 aa6.15□□□□□ -1.43
VPS39-202ENST00000348544 MITD1Q8WV92 249 aa6.15□□□□□ -1.43
VPS39-202ENST00000348544 MCHR2Q969V1 340 aa6.15□□□□□ -1.43
VPS39-202ENST00000348544 COX14Q96I36 57 aa6.15□□□□□ -1.43
VPS39-202ENST00000348544 LMF1Q96S06 567 aa6.15□□□□□ -1.43
VPS39-202ENST00000348544 RNF126Q9BV68 326 aa6.15□□□□□ -1.43
VPS39-202ENST00000348544 HRH4Q9H3N8 390 aa6.15□□□□□ -1.43
VPS39-202ENST00000348544 SEC61A2Q9H9S3 476 aa6.15□□□□□ -1.43
VPS39-202ENST00000348544 ZMAT3Q9HA38 289 aaKnown RBP6.15□□□□□ -1.43
VPS39-202ENST00000348544 SMCO4Q9NRQ5 59 aa6.15□□□□□ -1.43
VPS39-202ENST00000348544 LPAR3Q9UBY5 353 aa6.15□□□□□ -1.43
VPS39-202ENST00000348544 MSRAQ9UJ68 235 aa6.15□□□□□ -1.43
VPS39-202ENST00000348544 FARSAQ9Y285 508 aaKnown RBP6.15□□□□□ -1.43
VPS39-202ENST00000348544 TMED7Q9Y3B3 224 aa6.15□□□□□ -1.43
VPS39-202ENST00000348544 CSAG2Q9Y5P2 127 aa6.15□□□□□ -1.43
VPS39-202ENST00000348544 LOC100509620A0A075B734 347 aa6.14□□□□□ -1.43
VPS39-202ENST00000348544 LOC100289279A0A1B0GTE1 492 aa6.14□□□□□ -1.43
VPS39-202ENST00000348544 A0A1W2PPC1 479 aa6.14□□□□□ -1.43
VPS39-202ENST00000348544 C9orf170A2RU37 121 aa6.14□□□□□ -1.43
VPS39-202ENST00000348544 LRRC72A6NJI9 287 aa6.14□□□□□ -1.43
VPS39-202ENST00000348544 C1QTNF3-AMACRE9PGA6 284 aa6.14□□□□□ -1.43
VPS39-202ENST00000348544 H0YIZ8 118 aa6.14□□□□□ -1.43
VPS39-202ENST00000348544 DCTN6O00399 190 aa6.14□□□□□ -1.43
VPS39-202ENST00000348544 CDC40O60508 579 aaKnown RBP eCLIP6.14□□□□□ -1.43
VPS39-202ENST00000348544 AK1P00568 194 aa6.14□□□□□ -1.43
VPS39-202ENST00000348544 S100A6P06703 90 aa6.14□□□□□ -1.43
VPS39-202ENST00000348544 CRHP06850 196 aa6.14□□□□□ -1.43
VPS39-202ENST00000348544 KLK3P07288 261 aaPredicted RBP6.14□□□□□ -1.43
VPS39-202ENST00000348544 SLC35G4P0C7Q5 338 aa6.14□□□□□ -1.43
VPS39-202ENST00000348544 RBM34P42696 430 aaKnown RBP6.14□□□□□ -1.43
VPS39-202ENST00000348544 KIR3DL2P43630 455 aa6.14□□□□□ -1.43
VPS39-202ENST00000348544 PPICP45877 212 aa6.14□□□□□ -1.43
VPS39-202ENST00000348544 RAB28P51157 221 aa6.14□□□□□ -1.43
VPS39-202ENST00000348544 CAV2P51636 162 aa6.14□□□□□ -1.43
VPS39-202ENST00000348544 MESP2Q0VG99 397 aa6.14□□□□□ -1.43
VPS39-202ENST00000348544 MOGAT2Q3SYC2 334 aa6.14□□□□□ -1.43
VPS39-202ENST00000348544 C9orf152Q5JTZ5 239 aa6.14□□□□□ -1.43
VPS39-202ENST00000348544 ZNF425Q6IV72 752 aa6.14□□□□□ -1.43
VPS39-202ENST00000348544 KIRREL2Q6UWL6 708 aa6.14□□□□□ -1.43
VPS39-202ENST00000348544 FAM220AQ7Z4H9 259 aa6.14□□□□□ -1.43
VPS39-202ENST00000348544 SLC25A42Q86VD7 318 aa6.14□□□□□ -1.43
VPS39-202ENST00000348544 SLC43A2Q8N370 569 aa6.14□□□□□ -1.43
VPS39-202ENST00000348544 ZNF614Q8N883 585 aa6.14□□□□□ -1.43
VPS39-202ENST00000348544 EXD3Q8N9H8 876 aa6.14□□□□□ -1.43
VPS39-202ENST00000348544 ZSCAN4Q8NAM6 433 aaPredicted RBP6.14□□□□□ -1.43
VPS39-202ENST00000348544 BHLHE23Q8NDY6 225 aa6.14□□□□□ -1.43
VPS39-202ENST00000348544 OR4E2Q8NGC2 313 aa6.14□□□□□ -1.43
VPS39-202ENST00000348544 NUDCD2Q8WVJ2 157 aa6.14□□□□□ -1.43
VPS39-202ENST00000348544 SUSD6Q92537 303 aa6.14□□□□□ -1.43
VPS39-202ENST00000348544 ZNF285Q96NJ3 590 aa6.14□□□□□ -1.43
VPS39-202ENST00000348544 NECAB3Q96P71 396 aaPredicted RBP6.14□□□□□ -1.43
VPS39-202ENST00000348544 RSRP1Q9BUV0 290 aa6.14□□□□□ -1.43
VPS39-202ENST00000348544 SPHK2Q9NRA0 654 aa6.14□□□□□ -1.43
VPS39-202ENST00000348544 CDV3Q9UKY7 258 aaKnown RBP6.14□□□□□ -1.43
VPS39-202ENST00000348544 C19orf53Q9UNZ5 99 aaPredicted RBP6.14□□□□□ -1.43
VPS39-202ENST00000348544 TRBV6-7A0A0A0MS04 114 aa6.14□□□□□ -1.43
VPS39-202ENST00000348544 A6NLC8 198 aa6.14□□□□□ -1.43
VPS39-202ENST00000348544 ZNF736B4DX44 427 aaPredicted RBP6.14□□□□□ -1.43
VPS39-202ENST00000348544 RNASEK-C17orf49H0YIS7 233 aa6.14□□□□□ -1.43
VPS39-202ENST00000348544 SLC17A2O00624 439 aa6.14□□□□□ -1.43
VPS39-202ENST00000348544 HOXA2O43364 376 aa6.14□□□□□ -1.43
VPS39-202ENST00000348544 PPIHO43447 177 aaKnown RBP6.14□□□□□ -1.43
VPS39-202ENST00000348544 BRINP1O60477 761 aa6.14□□□□□ -1.43
VPS39-202ENST00000348544 DOK2O60496 412 aa6.14□□□□□ -1.43
VPS39-202ENST00000348544 ZNF888P0CJ79 500 aaPredicted RBP6.14□□□□□ -1.43
VPS39-202ENST00000348544 SELLP14151 372 aa6.14□□□□□ -1.43
VPS39-202ENST00000348544 ELNP15502 786 aa6.14□□□□□ -1.43
VPS39-202ENST00000348544 NQO2P16083 231 aa6.14□□□□□ -1.43
VPS39-202ENST00000348544 CPT2P23786 658 aa6.14□□□□□ -1.43
VPS39-202ENST00000348544 PBX2P40425 430 aa6.14□□□□□ -1.43
VPS39-202ENST00000348544 LPAR6P43657 344 aa6.14□□□□□ -1.43
VPS39-202ENST00000348544 NAAAQ02083 359 aa6.14□□□□□ -1.43
VPS39-202ENST00000348544 AIMP2Q13155 320 aaKnown RBP6.14□□□□□ -1.43
VPS39-202ENST00000348544 FAM53BQ14153 422 aa6.14□□□□□ -1.43
VPS39-202ENST00000348544 EXOSC7Q15024 291 aaKnown RBP6.14□□□□□ -1.43
VPS39-202ENST00000348544 RAB11BQ15907 218 aa6.14□□□□□ -1.43
VPS39-202ENST00000348544 PNLIPRP3Q17RR3 467 aa6.14□□□□□ -1.43
VPS39-202ENST00000348544 OR2B11Q5JQS5 317 aa6.14□□□□□ -1.43
VPS39-202ENST00000348544 OR52W1Q6IF63 320 aa6.14□□□□□ -1.43
VPS39-202ENST00000348544 LEG1Q6P5S2 330 aa6.14□□□□□ -1.43
VPS39-202ENST00000348544 DHRS11Q6UWP2 260 aa6.14□□□□□ -1.43
VPS39-202ENST00000348544 DRAM2Q6UX65 266 aa6.14□□□□□ -1.43
VPS39-202ENST00000348544 DPY19L2P2Q6ZN68 376 aa6.14□□□□□ -1.43
VPS39-202ENST00000348544 ABHD13Q7L211 337 aa6.14□□□□□ -1.43
VPS39-202ENST00000348544 ZNF627Q7L945 461 aa6.14□□□□□ -1.43
VPS39-202ENST00000348544 SLC16A9Q7RTY1 509 aa6.14□□□□□ -1.43
VPS39-202ENST00000348544 VN1R4Q7Z5H5 301 aa6.14□□□□□ -1.43
VPS39-202ENST00000348544 CD163Q86VB7 1156 aa6.14□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms