RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 GRK6P43250 576 aa20.25■□□□□ 0.83
TRIM28-202ENST00000341753 RPS4XP62701 263 aaKnown RBP20.25■□□□□ 0.83
TRIM28-202ENST00000341753 DMWDQ09019 674 aa20.25■□□□□ 0.83
TRIM28-202ENST00000341753 WDR38Q5JTN6 314 aa20.25■□□□□ 0.83
TRIM28-202ENST00000341753 MOB3CQ70IA8 216 aa20.25■□□□□ 0.83
TRIM28-202ENST00000341753 CDC20BQ86Y33 519 aa20.25■□□□□ 0.83
TRIM28-202ENST00000341753 SDR16C5Q8N3Y7 309 aa20.25■□□□□ 0.83
TRIM28-202ENST00000341753 ZFYVE21Q9BQ24 234 aa20.25■□□□□ 0.83
TRIM28-202ENST00000341753 POLE3Q9NRF9 147 aa20.25■□□□□ 0.83
TRIM28-202ENST00000341753 ACTR10Q9NZ32 417 aa20.25■□□□□ 0.83
TRIM28-202ENST00000341753 PURGQ9UJV8 347 aaKnown RBP20.25■□□□□ 0.83
TRIM28-202ENST00000341753 NOP16Q9Y3C1 178 aaKnown RBP20.25■□□□□ 0.83
TRIM28-202ENST00000341753 MPTX1A8MV57 137 aa20.24■□□□□ 0.83
TRIM28-202ENST00000341753 SLC25A12O75746 678 aa20.24■□□□□ 0.83
TRIM28-202ENST00000341753 RAB11BQ15907 218 aa20.24■□□□□ 0.83
TRIM28-202ENST00000341753 NKPD1Q17RQ9 610 aa20.24■□□□□ 0.83
TRIM28-202ENST00000341753 DEFB110Q30KQ9 67 aa20.24■□□□□ 0.83
TRIM28-202ENST00000341753 ALG10Q5BKT4 473 aa20.24■□□□□ 0.83
TRIM28-202ENST00000341753 EXD3Q8N9H8 876 aa20.24■□□□□ 0.83
TRIM28-202ENST00000341753 OR1S2Q8NGQ3 325 aa20.24■□□□□ 0.83
TRIM28-202ENST00000341753 ELSPBP1Q96BH3 223 aa20.24■□□□□ 0.83
TRIM28-202ENST00000341753 ZNF768Q9H5H4 540 aaKnown RBP20.24■□□□□ 0.83
TRIM28-202ENST00000341753 ASF1BQ9NVP2 202 aa20.24■□□□□ 0.83
TRIM28-202ENST00000341753 KCNG2Q9UJ96 466 aa20.24■□□□□ 0.83
TRIM28-202ENST00000341753 DISC1C4P0D8 188 aa20.24■□□□□ 0.83
TRIM28-202ENST00000341753 ERV3-1Q14264 604 aa20.24■□□□□ 0.83
TRIM28-202ENST00000341753 GUCA2BQ16661 112 aa20.24■□□□□ 0.83
TRIM28-202ENST00000341753 ZNF542PQ5EBM4 170 aa20.24■□□□□ 0.83
TRIM28-202ENST00000341753 FAM122BQ7Z309 247 aa20.24■□□□□ 0.83
TRIM28-202ENST00000341753 ZNF761Q86XN6 746 aaPredicted RBP20.24■□□□□ 0.83
TRIM28-202ENST00000341753 CBLN2Q8IUK8 224 aa20.24■□□□□ 0.83
TRIM28-202ENST00000341753 TSNAXQ99598 290 aaKnown RBP20.24■□□□□ 0.83
TRIM28-202ENST00000341753 GMEB2Q9UKD1 530 aa20.24■□□□□ 0.83
TRIM28-202ENST00000341753 PLEKHA6Q9Y2H5 1048 aa20.24■□□□□ 0.83
TRIM28-202ENST00000341753 A0A1B0GW55 424 aa20.23■□□□□ 0.83
TRIM28-202ENST00000341753 ABCD4O14678 606 aa20.23■□□□□ 0.83
TRIM28-202ENST00000341753 SIGLEC6O43699 453 aa20.23■□□□□ 0.83
TRIM28-202ENST00000341753 KCNJ13O60928 360 aa20.23■□□□□ 0.83
TRIM28-202ENST00000341753 MTRF1O75570 445 aaKnown RBP20.23■□□□□ 0.83
TRIM28-202ENST00000341753 PMS2P2O95744 297 aa20.23■□□□□ 0.83
TRIM28-202ENST00000341753 DUX4L2P0CJ85 424 aa20.23■□□□□ 0.83
TRIM28-202ENST00000341753 DUX4L3P0CJ86 424 aa20.23■□□□□ 0.83
TRIM28-202ENST00000341753 DUX4L4P0CJ87 422 aa20.23■□□□□ 0.83
TRIM28-202ENST00000341753 DUX4L5P0CJ88 424 aa20.23■□□□□ 0.83
TRIM28-202ENST00000341753 DUX4L6P0CJ89 424 aa20.23■□□□□ 0.83
TRIM28-202ENST00000341753 DUX4L7P0CJ90 424 aa20.23■□□□□ 0.83
TRIM28-202ENST00000341753 S1PR1P21453 382 aa20.23■□□□□ 0.83
TRIM28-202ENST00000341753 ATP1B3P54709 279 aa20.23■□□□□ 0.83
TRIM28-202ENST00000341753 PSMD4P55036 377 aaKnown RBP20.23■□□□□ 0.83
TRIM28-202ENST00000341753 PRPS1P60891 318 aa20.23■□□□□ 0.83
TRIM28-202ENST00000341753 FGL1Q08830 312 aa20.23■□□□□ 0.83
TRIM28-202ENST00000341753 ATPAF1Q5TC12 328 aaPredicted RBP20.23■□□□□ 0.83
TRIM28-202ENST00000341753 GLT8D1Q68CQ7 371 aa20.23■□□□□ 0.83
TRIM28-202ENST00000341753 OR10K2Q6IF99 312 aa20.23■□□□□ 0.83
TRIM28-202ENST00000341753 UNQ6126/PRO20091Q6UXV3 157 aa20.23■□□□□ 0.83
TRIM28-202ENST00000341753 OR9A4Q8NGU2 314 aa20.23■□□□□ 0.83
TRIM28-202ENST00000341753 DZANK1Q9NVP4 752 aa20.23■□□□□ 0.83
TRIM28-202ENST00000341753 DUX4Q9UBX2 424 aa20.23■□□□□ 0.83
TRIM28-202ENST00000341753 PCDHB10Q9UN67 800 aa20.23■□□□□ 0.83
TRIM28-202ENST00000341753 ZNF98A6NK75 572 aa20.23■□□□□ 0.83
TRIM28-202ENST00000341753 OIP5O43482 229 aa20.23■□□□□ 0.83
TRIM28-202ENST00000341753 CDC40O60508 579 aaKnown RBP eCLIP20.23■□□□□ 0.83
TRIM28-202ENST00000341753 SRPX2O60687 465 aaPredicted RBP20.23■□□□□ 0.83
TRIM28-202ENST00000341753 GP1BAP07359 652 aa20.23■□□□□ 0.83
TRIM28-202ENST00000341753 CD14P08571 375 aa20.23■□□□□ 0.83
TRIM28-202ENST00000341753 DLSTP36957 453 aa20.23■□□□□ 0.83
TRIM28-202ENST00000341753 CENPAP49450 140 aa20.23■□□□□ 0.83
TRIM28-202ENST00000341753 DHRS2Q13268 280 aa20.23■□□□□ 0.83
TRIM28-202ENST00000341753 SLC22A18Q96BI1 424 aa20.23■□□□□ 0.83
TRIM28-202ENST00000341753 SEH1LQ96EE3 360 aa20.23■□□□□ 0.83
TRIM28-202ENST00000341753 BMFQ96LC9 184 aa20.23■□□□□ 0.83
TRIM28-202ENST00000341753 KLHDC3Q9BQ90 382 aa20.23■□□□□ 0.83
TRIM28-202ENST00000341753 SYT4Q9H2B2 425 aa20.23■□□□□ 0.83
TRIM28-202ENST00000341753 MLXQ9UH92 298 aa20.23■□□□□ 0.83
TRIM28-202ENST00000341753 F12P00748 615 aaPredicted RBP20.22■□□□□ 0.83
TRIM28-202ENST00000341753 CD34P28906 385 aa20.22■□□□□ 0.83
TRIM28-202ENST00000341753 BDKRB2P30411 391 aa20.22■□□□□ 0.83
TRIM28-202ENST00000341753 PPP1CAP62136 330 aa20.22■□□□□ 0.83
TRIM28-202ENST00000341753 PPIAP62937 165 aaKnown RBP20.22■□□□□ 0.83
TRIM28-202ENST00000341753 GPR18Q14330 331 aa20.22■□□□□ 0.83
TRIM28-202ENST00000341753 ASPHD2Q6ICH7 369 aa20.22■□□□□ 0.83
TRIM28-202ENST00000341753 PUSL1Q8N0Z8 303 aaKnown RBP20.22■□□□□ 0.83
TRIM28-202ENST00000341753 KCNRGQ8N5I3 272 aa20.22■□□□□ 0.83
TRIM28-202ENST00000341753 OR4S1Q8NGB4 309 aa20.22■□□□□ 0.83
TRIM28-202ENST00000341753 GPX8Q8TED1 209 aa20.22■□□□□ 0.83
TRIM28-202ENST00000341753 CCDC107Q8WV48 283 aa20.22■□□□□ 0.83
TRIM28-202ENST00000341753 DNTTIP1Q9H147 329 aa20.22■□□□□ 0.83
TRIM28-202ENST00000341753 C1orf198Q9H425 327 aa20.22■□□□□ 0.83
TRIM28-202ENST00000341753 CGGBP1Q9UFW8 167 aaPredicted RBP20.22■□□□□ 0.83
TRIM28-202ENST00000341753 ERVK-19Q9WJR5 959 aa20.22■□□□□ 0.83
TRIM28-202ENST00000341753 A0A0D9SG52 128 aa20.22■□□□□ 0.83
TRIM28-202ENST00000341753 TGFBR3LH3BV60 316 aa20.22■□□□□ 0.83
TRIM28-202ENST00000341753 TMEM127O75204 238 aa20.22■□□□□ 0.83
TRIM28-202ENST00000341753 SERTAD2Q14140 314 aa20.22■□□□□ 0.83
TRIM28-202ENST00000341753 MESTQ5EB52 335 aa20.22■□□□□ 0.83
TRIM28-202ENST00000341753 MCHR2Q969V1 340 aa20.22■□□□□ 0.83
TRIM28-202ENST00000341753 ZNF524Q96C55 264 aa20.22■□□□□ 0.83
TRIM28-202ENST00000341753 GRHPRQ9UBQ7 328 aa20.22■□□□□ 0.83
TRIM28-202ENST00000341753 TNFSF18Q9UNG2 199 aa20.22■□□□□ 0.83
TRIM28-202ENST00000341753 RNF222A6NCQ9 220 aa20.21■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms