RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 SPANXN4Q5MJ08 99 aa7.57□□□□□ -1.2
HMGB1-203ENST00000341423 LINC01356Q8N9X3 169 aa7.57□□□□□ -1.2
HMGB1-203ENST00000341423 OR5D14Q8NGL3 314 aa7.57□□□□□ -1.2
HMGB1-203ENST00000341423 HAVCR2Q8TDQ0 301 aa7.57□□□□□ -1.2
HMGB1-203ENST00000341423 C15orf40Q8WUR7 153 aa7.57□□□□□ -1.2
HMGB1-203ENST00000341423 NEIL1Q96FI4 390 aaPredicted RBP7.57□□□□□ -1.2
HMGB1-203ENST00000341423 CRIM1Q9NZV1 1036 aa7.57□□□□□ -1.2
HMGB1-203ENST00000341423 NKX1-2Q9UD57 310 aaPredicted RBP7.57□□□□□ -1.2
HMGB1-203ENST00000341423 MYH1P12882 1939 aa7.57□□□□□ -1.2
HMGB1-203ENST00000341423 ABLIM1O14639 778 aa7.57□□□□□ -1.2
HMGB1-203ENST00000341423 AURKAO14965 403 aa7.57□□□□□ -1.2
HMGB1-203ENST00000341423 ANXA7P20073 488 aaKnown RBP7.57□□□□□ -1.2
HMGB1-203ENST00000341423 EFNA4P52798 201 aa7.57□□□□□ -1.2
HMGB1-203ENST00000341423 METAP1P53582 386 aa7.57□□□□□ -1.2
HMGB1-203ENST00000341423 MVDP53602 400 aa7.57□□□□□ -1.2
HMGB1-203ENST00000341423 FOXF1Q12946 379 aa7.57□□□□□ -1.2
HMGB1-203ENST00000341423 LRRC36Q1X8D7 754 aa7.57□□□□□ -1.2
HMGB1-203ENST00000341423 KCTD20Q7Z5Y7 419 aa7.57□□□□□ -1.2
HMGB1-203ENST00000341423 ENTHD1Q8IYW4 607 aa7.57□□□□□ -1.2
HMGB1-203ENST00000341423 TMEM130Q8N3G9 435 aa7.57□□□□□ -1.2
HMGB1-203ENST00000341423 OR2A5Q96R48 311 aa7.57□□□□□ -1.2
HMGB1-203ENST00000341423 RAB33BQ9H082 229 aa7.57□□□□□ -1.2
HMGB1-203ENST00000341423 ZNF700Q9H0M5 742 aa7.57□□□□□ -1.2
HMGB1-203ENST00000341423 ZNF224Q9NZL3 707 aa7.57□□□□□ -1.2
HMGB1-203ENST00000341423 COPZ2Q9P299 210 aa7.57□□□□□ -1.2
HMGB1-203ENST00000341423 TEX264Q9Y6I9 313 aa7.57□□□□□ -1.2
HMGB1-203ENST00000341423 PRSS21Q9Y6M0 314 aa7.57□□□□□ -1.2
HMGB1-203ENST00000341423 RGPD4Q7Z3J3 1758 aa7.57□□□□□ -1.2
HMGB1-203ENST00000341423 PLA2G2AP14555 144 aa7.56□□□□□ -1.2
HMGB1-203ENST00000341423 MSX2P35548 267 aaPredicted RBP7.56□□□□□ -1.2
HMGB1-203ENST00000341423 VDAC2P45880 294 aaPredicted RBP7.56□□□□□ -1.2
HMGB1-203ENST00000341423 AP3S2P59780 193 aa7.56□□□□□ -1.2
HMGB1-203ENST00000341423 AWAT2Q6E213 333 aa7.56□□□□□ -1.2
HMGB1-203ENST00000341423 CXorf67Q86X51 503 aaPredicted RBP7.56□□□□□ -1.2
HMGB1-203ENST00000341423 OR10G2Q8NGC3 310 aa7.56□□□□□ -1.2
HMGB1-203ENST00000341423 OR7D2Q96RA2 312 aa7.56□□□□□ -1.2
HMGB1-203ENST00000341423 CNN2Q99439 309 aaKnown RBP7.56□□□□□ -1.2
HMGB1-203ENST00000341423 GATA5Q9BWX5 397 aaPredicted RBP7.56□□□□□ -1.2
HMGB1-203ENST00000341423 LINC00854A0A1B0GVQ3 168 aa7.56□□□□□ -1.2
HMGB1-203ENST00000341423 TMEM269A0A1B0GVZ9 245 aa7.56□□□□□ -1.2
HMGB1-203ENST00000341423 POM121CA8CG34 1229 aa7.56□□□□□ -1.2
HMGB1-203ENST00000341423 FGF17O60258 216 aa7.56□□□□□ -1.2
HMGB1-203ENST00000341423 MT-ND2P03891 347 aa7.56□□□□□ -1.2
HMGB1-203ENST00000341423 LIPFP07098 398 aa7.56□□□□□ -1.2
HMGB1-203ENST00000341423 GRIA1P42261 906 aa7.56□□□□□ -1.2
HMGB1-203ENST00000341423 PPP1CBP62140 327 aa7.56□□□□□ -1.2
HMGB1-203ENST00000341423 ENTPD8Q5MY95 495 aa7.56□□□□□ -1.2
HMGB1-203ENST00000341423 NUP188Q5SRE5 1749 aa7.56□□□□□ -1.2
HMGB1-203ENST00000341423 ARHGAP22Q7Z5H3 698 aa7.56□□□□□ -1.2
HMGB1-203ENST00000341423 OR4C3Q8NH37 302 aa7.56□□□□□ -1.2
HMGB1-203ENST00000341423 TMEM239Q8WW34 195 aa7.56□□□□□ -1.2
HMGB1-203ENST00000341423 COMMD5Q9GZQ3 224 aa7.56□□□□□ -1.2
HMGB1-203ENST00000341423 PLPP1O14494 284 aa7.56□□□□□ -1.2
HMGB1-203ENST00000341423 ANKRD55Q3KP44 614 aa7.56□□□□□ -1.2
HMGB1-203ENST00000341423 LPCAT4Q643R3 524 aa7.56□□□□□ -1.2
HMGB1-203ENST00000341423 PAQR6Q6TCH4 344 aa7.56□□□□□ -1.2
HMGB1-203ENST00000341423 ZNF788Q6ZQV5 615 aa7.56□□□□□ -1.2
HMGB1-203ENST00000341423 KDF1Q8NAX2 398 aaPredicted RBP7.56□□□□□ -1.2
HMGB1-203ENST00000341423 OR6S1Q8NH40 331 aa7.56□□□□□ -1.2
HMGB1-203ENST00000341423 CD200R1Q8TD46 325 aa7.56□□□□□ -1.2
HMGB1-203ENST00000341423 STACQ99469 402 aa7.56□□□□□ -1.2
HMGB1-203ENST00000341423 QRSL1Q9H0R6 528 aaKnown RBP7.56□□□□□ -1.2
HMGB1-203ENST00000341423 RRP15Q9Y3B9 282 aaKnown RBP7.56□□□□□ -1.2
HMGB1-203ENST00000341423 HS3ST3B1Q9Y662 390 aa7.56□□□□□ -1.2
HMGB1-203ENST00000341423 A0A087WV48 116 aa7.56□□□□□ -1.2
HMGB1-203ENST00000341423 TRAV20A0A0B4J274 112 aa7.56□□□□□ -1.2
HMGB1-203ENST00000341423 SPINT1O43278 529 aa7.56□□□□□ -1.2
HMGB1-203ENST00000341423 NID1P14543 1247 aa7.56□□□□□ -1.2
HMGB1-203ENST00000341423 PPP5CP53041 499 aa7.56□□□□□ -1.2
HMGB1-203ENST00000341423 TUBA1BP68363 451 aa7.56□□□□□ -1.2
HMGB1-203ENST00000341423 TUBA4AP68366 448 aa7.56□□□□□ -1.2
HMGB1-203ENST00000341423 CDCP2Q5VXM1 449 aa7.56□□□□□ -1.2
HMGB1-203ENST00000341423 TUBA1AQ71U36 451 aa7.56□□□□□ -1.2
HMGB1-203ENST00000341423 NR2C2APQ86WQ0 139 aa7.56□□□□□ -1.2
HMGB1-203ENST00000341423 TUSC5Q8IXB3 177 aa7.56□□□□□ -1.2
HMGB1-203ENST00000341423 SLC35B2Q8TB61 432 aa7.56□□□□□ -1.2
HMGB1-203ENST00000341423 CHPT1Q8WUD6 406 aa7.56□□□□□ -1.2
HMGB1-203ENST00000341423 TNFAIP8L1Q8WVP5 186 aa7.56□□□□□ -1.2
HMGB1-203ENST00000341423 RASD2Q96D21 266 aa7.56□□□□□ -1.2
HMGB1-203ENST00000341423 MS4A6EQ96DS6 147 aa7.56□□□□□ -1.2
HMGB1-203ENST00000341423 ZNF764Q96H86 408 aaPredicted RBP7.56□□□□□ -1.2
HMGB1-203ENST00000341423 LRRC3BQ96PB8 259 aa7.56□□□□□ -1.2
HMGB1-203ENST00000341423 PNPLA3Q9NST1 481 aa7.56□□□□□ -1.2
HMGB1-203ENST00000341423 KIF25Q9UIL4 384 aa7.56□□□□□ -1.2
HMGB1-203ENST00000341423 ZNF229Q9UJW7 825 aa7.56□□□□□ -1.2
HMGB1-203ENST00000341423 LRRC10BA6NIK2 292 aa7.55□□□□□ -1.2
HMGB1-203ENST00000341423 IQCJ-SCHIP1C9J366 451 aaPredicted RBP7.55□□□□□ -1.2
HMGB1-203ENST00000341423 THY1P04216 161 aa7.55□□□□□ -1.2
HMGB1-203ENST00000341423 TMEM33P57088 247 aa7.55□□□□□ -1.2
HMGB1-203ENST00000341423 NCR3LG1Q68D85 454 aa7.55□□□□□ -1.2
HMGB1-203ENST00000341423 KDM4DQ6B0I6 523 aa7.55□□□□□ -1.2
HMGB1-203ENST00000341423 ADGRF3Q8IZF5 1079 aa7.55□□□□□ -1.2
HMGB1-203ENST00000341423 NOA1Q8NC60 698 aaKnown RBP7.55□□□□□ -1.2
HMGB1-203ENST00000341423 PKMYT1Q99640 499 aa7.55□□□□□ -1.2
HMGB1-203ENST00000341423 TMEM109Q9BVC6 243 aa7.55□□□□□ -1.2
HMGB1-203ENST00000341423 MYO10Q9HD67 2058 aa7.55□□□□□ -1.2
HMGB1-203ENST00000341423 LOC390937A0A1W2PQ73 354 aa7.55□□□□□ -1.2
HMGB1-203ENST00000341423 SNNO75324 88 aaPredicted RBP7.55□□□□□ -1.2
HMGB1-203ENST00000341423 AMY2BP19961 511 aa7.55□□□□□ -1.2
HMGB1-203ENST00000341423 ABCD3P28288 659 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms