RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 FGGYQ96C11 551 aa10.84□□□□□ -0.67
USP1-201ENST00000339950 OR2M2Q96R28 347 aa10.84□□□□□ -0.67
USP1-201ENST00000339950 METTL8Q9H825 291 aaKnown RBP10.84□□□□□ -0.67
USP1-201ENST00000339950 EMC7Q9NPA0 242 aa10.84□□□□□ -0.67
USP1-201ENST00000339950 SDHAF2Q9NX18 166 aa10.84□□□□□ -0.67
USP1-201ENST00000339950 CAMK2AQ9UQM7 478 aa10.84□□□□□ -0.67
USP1-201ENST00000339950 U3KQ87 197 aa10.84□□□□□ -0.67
USP1-201ENST00000339950 PLXNA3P51805 1871 aa10.84□□□□□ -0.67
USP1-201ENST00000339950 CYR61O00622 381 aa10.84□□□□□ -0.67
USP1-201ENST00000339950 ALOX12BO75342 701 aa10.84□□□□□ -0.67
USP1-201ENST00000339950 RAF1P04049 648 aa10.84□□□□□ -0.67
USP1-201ENST00000339950 THBS1P07996 1170 aa10.84□□□□□ -0.67
USP1-201ENST00000339950 ZNF20P17024 532 aa10.84□□□□□ -0.67
USP1-201ENST00000339950 FBLP22087 321 aaKnown RBP10.84□□□□□ -0.67
USP1-201ENST00000339950 FCARP24071 287 aa10.84□□□□□ -0.67
USP1-201ENST00000339950 PER3P56645 1201 aa10.84□□□□□ -0.67
USP1-201ENST00000339950 POU4F2Q12837 409 aa10.84□□□□□ -0.67
USP1-201ENST00000339950 COL28A1Q2UY09 1125 aa10.84□□□□□ -0.67
USP1-201ENST00000339950 WBP2NLQ6ICG8 309 aa10.84□□□□□ -0.67
USP1-201ENST00000339950 KCTD20Q7Z5Y7 419 aa10.84□□□□□ -0.67
USP1-201ENST00000339950 TPRA1Q86W33 373 aa10.84□□□□□ -0.67
USP1-201ENST00000339950 RASGRP3Q8IV61 690 aa10.84□□□□□ -0.67
USP1-201ENST00000339950 ZNF584Q8IVC4 421 aa10.84□□□□□ -0.67
USP1-201ENST00000339950 C9orf62Q8N4C0 152 aa10.84□□□□□ -0.67
USP1-201ENST00000339950 ZNF283Q8N7M2 679 aa10.84□□□□□ -0.67
USP1-201ENST00000339950 SMIM3Q9BZL3 60 aa10.84□□□□□ -0.67
USP1-201ENST00000339950 TINAGL1Q9GZM7 467 aaPredicted RBP10.84□□□□□ -0.67
USP1-201ENST00000339950 ABRACLQ9P1F3 81 aa10.84□□□□□ -0.67
USP1-201ENST00000339950 PILRAQ9UKJ1 303 aa10.84□□□□□ -0.67
USP1-201ENST00000339950 FNDC1Q4ZHG4 1894 aaPredicted RBP10.84□□□□□ -0.67
USP1-201ENST00000339950 DIDO1Q9BTC0 2240 aaKnown RBP10.84□□□□□ -0.67
USP1-201ENST00000339950 FAM221BA6H8Z2 402 aa10.84□□□□□ -0.67
USP1-201ENST00000339950 ZNF878C9JN71 531 aa10.84□□□□□ -0.67
USP1-201ENST00000339950 ACOT7O00154 380 aa10.84□□□□□ -0.67
USP1-201ENST00000339950 SUSD5O60279 629 aa10.84□□□□□ -0.67
USP1-201ENST00000339950 PRH1P02810 166 aa10.84□□□□□ -0.67
USP1-201ENST00000339950 P2RX1P51575 399 aa10.84□□□□□ -0.67
USP1-201ENST00000339950 MAP2K6P52564 334 aa10.84□□□□□ -0.67
USP1-201ENST00000339950 PRPS1P60891 318 aa10.84□□□□□ -0.67
USP1-201ENST00000339950 MLC1Q15049 377 aa10.84□□□□□ -0.67
USP1-201ENST00000339950 C9orf135Q5VTT2 229 aa10.84□□□□□ -0.67
USP1-201ENST00000339950 TSSK4Q6SA08 328 aa10.84□□□□□ -0.67
USP1-201ENST00000339950 OR6N1Q8NGY5 312 aa10.84□□□□□ -0.67
USP1-201ENST00000339950 BCL2L14Q9BZR8 327 aa10.84□□□□□ -0.67
USP1-201ENST00000339950 FANCFQ9NPI8 374 aa10.84□□□□□ -0.67
USP1-201ENST00000339950 MRTO4Q9UKD2 239 aaKnown RBP10.84□□□□□ -0.67
USP1-201ENST00000339950 TO15178 435 aa10.83□□□□□ -0.68
USP1-201ENST00000339950 PLPP2O43688 288 aa10.83□□□□□ -0.68
USP1-201ENST00000339950 GLCEO94923 617 aa10.83□□□□□ -0.68
USP1-201ENST00000339950 ENPP1P22413 925 aa10.83□□□□□ -0.68
USP1-201ENST00000339950 OR3A2P47893 321 aa10.83□□□□□ -0.68
USP1-201ENST00000339950 GAS1P54826 345 aa10.83□□□□□ -0.68
USP1-201ENST00000339950 LGALSLQ3ZCW2 172 aaPredicted RBP10.83□□□□□ -0.68
USP1-201ENST00000339950 DCXRQ7Z4W1 244 aa10.83□□□□□ -0.68
USP1-201ENST00000339950 LRRC18Q8N456 261 aa10.83□□□□□ -0.68
USP1-201ENST00000339950 BPIFB2Q8N4F0 458 aa10.83□□□□□ -0.68
USP1-201ENST00000339950 OR4C16Q8NGL9 310 aa10.83□□□□□ -0.68
USP1-201ENST00000339950 THAP6Q8TBB0 222 aa10.83□□□□□ -0.68
USP1-201ENST00000339950 FBXW5Q969U6 566 aa10.83□□□□□ -0.68
USP1-201ENST00000339950 FAM3DQ96BQ1 224 aa10.83□□□□□ -0.68
USP1-201ENST00000339950 OR5B2Q96R09 309 aa10.83□□□□□ -0.68
USP1-201ENST00000339950 CTSFQ9UBX1 484 aa10.83□□□□□ -0.68
USP1-201ENST00000339950 LEUTXA8MZ59 168 aa10.83□□□□□ -0.68
USP1-201ENST00000339950 AK1P00568 194 aa10.83□□□□□ -0.68
USP1-201ENST00000339950 HLA-AP01891 365 aaKnown RBP10.83□□□□□ -0.68
USP1-201ENST00000339950 HLA-DOBP13765 273 aa10.83□□□□□ -0.68
USP1-201ENST00000339950 IFNGR1P15260 489 aa10.83□□□□□ -0.68
USP1-201ENST00000339950 ZNF14P17017 642 aaPredicted RBP10.83□□□□□ -0.68
USP1-201ENST00000339950 ELOCQ15369 112 aa10.83□□□□□ -0.68
USP1-201ENST00000339950 PRTGQ2VWP7 1150 aa10.83□□□□□ -0.68
USP1-201ENST00000339950 RNASE10Q5GAN6 216 aaKnown RBP10.83□□□□□ -0.68
USP1-201ENST00000339950 UBE2NLQ5JXB2 153 aa10.83□□□□□ -0.68
USP1-201ENST00000339950 METTL11BQ5VVY1 283 aa10.83□□□□□ -0.68
USP1-201ENST00000339950 LAMTOR1Q6IAA8 161 aa10.83□□□□□ -0.68
USP1-201ENST00000339950 TMPRSS11FQ6ZWK6 438 aa10.83□□□□□ -0.68
USP1-201ENST00000339950 OR2G2Q8NGZ5 317 aa10.83□□□□□ -0.68
USP1-201ENST00000339950 TMEM231Q9H6L2 316 aa10.83□□□□□ -0.68
USP1-201ENST00000339950 EXOGQ9Y2C4 368 aaKnown RBP10.83□□□□□ -0.68
USP1-201ENST00000339950 TMEM184BQ9Y519 407 aaPredicted RBP10.83□□□□□ -0.68
USP1-201ENST00000339950 ENTPD2Q9Y5L3 495 aa10.83□□□□□ -0.68
USP1-201ENST00000339950 BDP1A6H8Y1 2624 aa10.83□□□□□ -0.68
USP1-201ENST00000339950 TGFBR3LH3BV60 316 aa10.83□□□□□ -0.68
USP1-201ENST00000339950 PIN1P1O15428 100 aa10.83□□□□□ -0.68
USP1-201ENST00000339950 B3GALNT1O75752 331 aa10.83□□□□□ -0.68
USP1-201ENST00000339950 IGHA1P01876 353 aa10.83□□□□□ -0.68
USP1-201ENST00000339950 LINC00271P0C7V0 271 aa10.83□□□□□ -0.68
USP1-201ENST00000339950 CDAP32320 146 aa10.83□□□□□ -0.68
USP1-201ENST00000339950 ACAA2P42765 397 aaKnown RBP10.83□□□□□ -0.68
USP1-201ENST00000339950 INPP5JQ15735 1006 aaPredicted RBP10.83□□□□□ -0.68
USP1-201ENST00000339950 C2orf76Q3KRA6 126 aa10.83□□□□□ -0.68
USP1-201ENST00000339950 C3orf33Q6P1S2 294 aa10.83□□□□□ -0.68
USP1-201ENST00000339950 DPY19L2P2Q6ZN68 376 aa10.83□□□□□ -0.68
USP1-201ENST00000339950 ZNF704Q6ZNC4 412 aaPredicted RBP10.83□□□□□ -0.68
USP1-201ENST00000339950 ABHD12BQ7Z5M8 362 aaPredicted RBP10.83□□□□□ -0.68
USP1-201ENST00000339950 SLC22A18ASQ8N1D0 253 aa10.83□□□□□ -0.68
USP1-201ENST00000339950 KLHL13Q9P2N7 655 aa10.83□□□□□ -0.68
USP1-201ENST00000339950 SDCBPO00560 298 aaPredicted RBP10.82□□□□□ -0.68
USP1-201ENST00000339950 NFYAP23511 347 aaPredicted RBP10.82□□□□□ -0.68
USP1-201ENST00000339950 NR0B2Q15466 257 aa10.82□□□□□ -0.68
USP1-201ENST00000339950 GSG1Q2KHT4 349 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms