RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 CD47Q08722 323 aa13.72□□□□□ -0.21
CLN3-201ENST00000333496 MTX3Q5HYI7 312 aa13.72□□□□□ -0.21
CLN3-201ENST00000333496 SLC25A47Q6Q0C1 308 aa13.72□□□□□ -0.21
CLN3-201ENST00000333496 THSD4Q6ZMP0 1018 aa13.72□□□□□ -0.21
CLN3-201ENST00000333496 FAM122BQ7Z309 247 aa13.72□□□□□ -0.21
CLN3-201ENST00000333496 ZNF584Q8IVC4 421 aa13.72□□□□□ -0.21
CLN3-201ENST00000333496 FBXL14Q8N1E6 418 aa13.72□□□□□ -0.21
CLN3-201ENST00000333496 Q96MF0 132 aa13.72□□□□□ -0.21
CLN3-201ENST00000333496 KCNS3Q9BQ31 491 aa13.72□□□□□ -0.21
CLN3-201ENST00000333496 FAM192AQ9GZU8 254 aa13.72□□□□□ -0.21
CLN3-201ENST00000333496 UGT2A1Q9Y4X1 527 aa13.72□□□□□ -0.21
CLN3-201ENST00000333496 UBL3O95164 117 aa13.71□□□□□ -0.22
CLN3-201ENST00000333496 CD14P08571 375 aa13.71□□□□□ -0.22
CLN3-201ENST00000333496 CDAP32320 146 aa13.71□□□□□ -0.22
CLN3-201ENST00000333496 MAGEA2P43356 314 aa13.71□□□□□ -0.22
CLN3-201ENST00000333496 SMIM11AP58511 58 aa13.71□□□□□ -0.22
CLN3-201ENST00000333496 MST1LQ2TV78 715 aa13.71□□□□□ -0.22
CLN3-201ENST00000333496 NRN1LQ496H8 165 aa13.71□□□□□ -0.22
CLN3-201ENST00000333496 ARIH2OSQ8N7S6 290 aa13.71□□□□□ -0.22
CLN3-201ENST00000333496 NANOS1Q8WY41 292 aaKnown RBP13.71□□□□□ -0.22
CLN3-201ENST00000333496 Q96M85 177 aa13.71□□□□□ -0.22
CLN3-201ENST00000333496 ALG12Q9BV10 488 aa13.71□□□□□ -0.22
CLN3-201ENST00000333496 CACNG6Q9BXT2 260 aa13.71□□□□□ -0.22
CLN3-201ENST00000333496 SMURF2Q9HAU4 748 aa13.71□□□□□ -0.22
CLN3-201ENST00000333496 CA10Q9NS85 328 aa13.71□□□□□ -0.22
CLN3-201ENST00000333496 IL20RAQ9UHF4 553 aa13.71□□□□□ -0.22
CLN3-201ENST00000333496 GDF2Q9UK05 429 aaPredicted RBP13.71□□□□□ -0.22
CLN3-201ENST00000333496 TCRBV3S1A0A5B6 114 aa13.7□□□□□ -0.22
CLN3-201ENST00000333496 AQP12BA6NM10 295 aa13.7□□□□□ -0.22
CLN3-201ENST00000333496 H3BNX3 289 aa13.7□□□□□ -0.22
CLN3-201ENST00000333496 RPL4P36578 427 aaKnown RBP13.7□□□□□ -0.22
CLN3-201ENST00000333496 ZNF84P51523 738 aa13.7□□□□□ -0.22
CLN3-201ENST00000333496 HMGA2P52926 109 aa13.7□□□□□ -0.22
CLN3-201ENST00000333496 RAB39AQ14964 217 aa13.7□□□□□ -0.22
CLN3-201ENST00000333496 TRIP10Q15642 601 aa13.7□□□□□ -0.22
CLN3-201ENST00000333496 THEM4Q5T1C6 240 aa13.7□□□□□ -0.22
CLN3-201ENST00000333496 OGFRL1Q5TC84 451 aaPredicted RBP13.7□□□□□ -0.22
CLN3-201ENST00000333496 FAM205BPQ63HN1 556 aa13.7□□□□□ -0.22
CLN3-201ENST00000333496 AQP12AQ8IXF9 295 aa13.7□□□□□ -0.22
CLN3-201ENST00000333496 PQLC1Q8N2U9 271 aa13.7□□□□□ -0.22
CLN3-201ENST00000333496 IL17RDQ8NFM7 739 aa13.7□□□□□ -0.22
CLN3-201ENST00000333496 NSMAFQ92636 917 aa13.7□□□□□ -0.22
CLN3-201ENST00000333496 NABP1Q96AH0 204 aa13.7□□□□□ -0.22
CLN3-201ENST00000333496 TRMT61AQ96FX7 289 aaKnown RBP13.7□□□□□ -0.22
CLN3-201ENST00000333496 GPX7Q96SL4 187 aaPredicted RBP13.7□□□□□ -0.22
CLN3-201ENST00000333496 NRIP3Q9NQ35 241 aa13.7□□□□□ -0.22
CLN3-201ENST00000333496 AURKCQ9UQB9 309 aa13.7□□□□□ -0.22
CLN3-201ENST00000333496 UNC119BA6NIH7 251 aa13.69□□□□□ -0.22
CLN3-201ENST00000333496 A6NIZ1 184 aa13.69□□□□□ -0.22
CLN3-201ENST00000333496 H7C1C5 153 aa13.69□□□□□ -0.22
CLN3-201ENST00000333496 NDUFB2O95178 105 aa13.69□□□□□ -0.22
CLN3-201ENST00000333496 IGHV4-39P01824 125 aa13.69□□□□□ -0.22
CLN3-201ENST00000333496 LYNP07948 512 aa13.69□□□□□ -0.22
CLN3-201ENST00000333496 ZNF35P13682 527 aa13.69□□□□□ -0.22
CLN3-201ENST00000333496 PEX2P28328 305 aa13.69□□□□□ -0.22
CLN3-201ENST00000333496 RAP1BP61224 184 aa13.69□□□□□ -0.22
CLN3-201ENST00000333496 LCN6P62502 163 aa13.69□□□□□ -0.22
CLN3-201ENST00000333496 RAP1AP62834 184 aa13.69□□□□□ -0.22
CLN3-201ENST00000333496 MRPS34P82930 218 aaKnown RBP13.69□□□□□ -0.22
CLN3-201ENST00000333496 MED21Q13503 144 aa13.69□□□□□ -0.22
CLN3-201ENST00000333496 SWI5Q1ZZU3 235 aa13.69□□□□□ -0.22
CLN3-201ENST00000333496 MESTQ5EB52 335 aa13.69□□□□□ -0.22
CLN3-201ENST00000333496 CIARTQ8N365 385 aaPredicted RBP13.69□□□□□ -0.22
CLN3-201ENST00000333496 LRRC18Q8N456 261 aa13.69□□□□□ -0.22
CLN3-201ENST00000333496 ICA1LQ8NDH6 482 aa13.69□□□□□ -0.22
CLN3-201ENST00000333496 NUP37Q8NFH4 326 aa13.69□□□□□ -0.22
CLN3-201ENST00000333496 OR4F15Q8NGB8 312 aa13.69□□□□□ -0.22
CLN3-201ENST00000333496 RBP7Q96R05 134 aa13.69□□□□□ -0.22
CLN3-201ENST00000333496 MAGIXQ9H6Y5 334 aa13.69□□□□□ -0.22
CLN3-201ENST00000333496 GRHPRQ9UBQ7 328 aa13.69□□□□□ -0.22
CLN3-201ENST00000333496 LYVE1Q9Y5Y7 322 aa13.69□□□□□ -0.22
CLN3-201ENST00000333496 CR1P17927 2039 aa13.69□□□□□ -0.22
CLN3-201ENST00000333496 OR10H3O60404 316 aa13.68□□□□□ -0.22
CLN3-201ENST00000333496 FARS2O95363 451 aaKnown RBP13.68□□□□□ -0.22
CLN3-201ENST00000333496 RAB36O95755 333 aa13.68□□□□□ -0.22
CLN3-201ENST00000333496 MMP7P09237 267 aaPredicted RBP13.68□□□□□ -0.22
CLN3-201ENST00000333496 ADIPOQQ15848 244 aa13.68□□□□□ -0.22
CLN3-201ENST00000333496 ETFDHQ16134 617 aa13.68□□□□□ -0.22
CLN3-201ENST00000333496 C1orf94Q6P1W5 598 aa13.68□□□□□ -0.22
CLN3-201ENST00000333496 VHLLQ6RSH7 139 aa13.68□□□□□ -0.22
CLN3-201ENST00000333496 SLC16A14Q7RTX9 510 aa13.68□□□□□ -0.22
CLN3-201ENST00000333496 FNDC8Q8TC99 324 aa13.68□□□□□ -0.22
CLN3-201ENST00000333496 RASD2Q96D21 266 aa13.68□□□□□ -0.22
CLN3-201ENST00000333496 DUS3LQ96G46 650 aaKnown RBP13.68□□□□□ -0.22
CLN3-201ENST00000333496 Q9H521 79 aa13.68□□□□□ -0.22
CLN3-201ENST00000333496 SIAEQ9HAT2 523 aa13.68□□□□□ -0.22
CLN3-201ENST00000333496 KRCC1Q9NPI7 259 aaPredicted RBP13.68□□□□□ -0.22
CLN3-201ENST00000333496 ZFHX3Q15911 3703 aa13.68□□□□□ -0.22
CLN3-201ENST00000333496 SLC22A23A1A5C7 686 aa13.68□□□□□ -0.22
CLN3-201ENST00000333496 TRIM64A6NGJ6 449 aa13.68□□□□□ -0.22
CLN3-201ENST00000333496 TRIM64BA6NI03 449 aa13.68□□□□□ -0.22
CLN3-201ENST00000333496 IMPA2O14732 288 aa13.68□□□□□ -0.22
CLN3-201ENST00000333496 SERPINA5P05154 406 aa13.68□□□□□ -0.22
CLN3-201ENST00000333496 NR2C1P13056 603 aa13.68□□□□□ -0.22
CLN3-201ENST00000333496 SDHAP31040 664 aa13.68□□□□□ -0.22
CLN3-201ENST00000333496 THBS4P35443 961 aa13.68□□□□□ -0.22
CLN3-201ENST00000333496 GSSP48637 474 aa13.68□□□□□ -0.22
CLN3-201ENST00000333496 PPP1R8Q12972 351 aaKnown RBP13.68□□□□□ -0.22
CLN3-201ENST00000333496 KRT80Q6KB66 452 aa13.68□□□□□ -0.22
CLN3-201ENST00000333496 PGBD2Q6P3X8 592 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms