RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 COX7A2P2O60397 106 aa7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 B4GALT2O60909 372 aa7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 IGHV4-39P01824 125 aa7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 EPHX1P07099 455 aa7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 HIST1H1EP10412 219 aaKnown RBP7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 FECHP22830 423 aa7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 PCSK6P29122 969 aa7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 DAP3P51398 398 aaKnown RBP7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 PCBP3P57721 371 aaKnown RBP7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 TNFAIP6P98066 277 aaPredicted RBP7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 PPP1R1AQ13522 171 aa7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 APOFQ13790 326 aa7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 MEF2DQ14814 521 aa7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 BPIFB2Q8N4F0 458 aa7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 OR4K2Q8NGD2 314 aa7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 HSH2DQ96JZ2 352 aa7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 WDFY2Q96P53 400 aa7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 MCOLN1Q9GZU1 580 aa7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 SLC6A14Q9UN76 642 aa7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 RPL26L1Q9UNX3 145 aaKnown RBP7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 ATP10BO94823 1461 aa7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 CORTO00230 105 aa7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 LIASO43766 372 aa7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 SMAGPQ0VAQ4 97 aa7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 ASPGQ86U10 573 aa7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 MYPOPQ86VE0 399 aaPredicted RBP7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 C2orf69Q8N8R5 385 aa7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 ZNF441Q8N8Z8 693 aa7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 ANKRD52Q8NB46 1076 aa7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 OR4F17Q8NGA8 305 aa7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 SLC45A2Q9UMX9 530 aa7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 A0A1B0GVG6 124 aa7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 A6NCN8 305 aa7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 SRPX2O60687 465 aaPredicted RBP7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 MDH2P40926 338 aaKnown RBP7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 DLX5P56178 289 aa7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 GALNT2Q10471 571 aa7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 GPNMBQ14956 572 aa7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 SELENOHQ8IZQ5 122 aaKnown RBP7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 FBXL6Q8N531 539 aa7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 LFNGQ8NES3 379 aa7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 LRRC15Q8TF66 581 aa7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 OPALINQ96PE5 141 aa7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 SLC22A7Q9Y694 548 aa7.07□□□□□ -1.28
LIMCH1-201ENST00000313860 FLT4P35916 1363 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 IFT172Q9UG01 1749 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 CTNSO60931 367 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 GJB5O95377 273 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 PRB1P04280 392 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 GALTP07902 379 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 ABHD2P08910 425 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 LOXL3P58215 753 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 PKIAP61925 76 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 ID2Q02363 134 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 FUT2Q10981 343 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 NR0B2Q15466 257 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 LTB4RQ15722 352 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 PHLDA2Q53GA4 152 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 RPUSD3Q6P087 351 aaKnown RBP7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 LYPD4Q6UWN0 246 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 SIAH1Q8IUQ4 282 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 NATD1Q8N6N6 113 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 OR2T6Q8NHC8 308 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 PTP4A1Q93096 173 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 ESAMQ96AP7 390 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 MEGF9Q9H1U4 602 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 RPF2Q9H7B2 306 aaKnown RBP7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 KLHL21Q9UJP4 597 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 INSIG2Q9Y5U4 225 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 ABCA9Q8IUA7 1624 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 TRAV17A0A0B4J275 112 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 CSO75390 466 aaKnown RBP7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 MOSPD3O75425 235 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 CST4P01036 141 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 FUCA1P04066 466 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 GOT1P17174 413 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 BCL3P20749 454 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 IDSP22304 550 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 HTR1FP30939 366 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 NKX3-2P78367 333 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 MEF2AQ02078 507 aaPredicted RBP7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 TEX26Q8N6G2 289 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 CLRN3Q8NCR9 226 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 RTN4IP1Q8WWV3 396 aaPredicted RBP7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 PBX4Q9BYU1 374 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 FOXJ2Q9P0K8 574 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 OR52A1Q9UKL2 312 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 LNP1A1A4G5 178 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 ANKRD61A6NGH8 418 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 ANHXE9PGG2 379 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 LALBAP00709 142 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 PMP2P02689 132 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 CDK4P11802 303 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 SRFP11831 508 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 KCNE1P15382 129 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 AVPR2P30518 371 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 CLCQ05315 142 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 OR1C1Q15619 314 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 SLC18B1Q6NT16 456 aa7.06□□□□□ -1.28
LIMCH1-201ENST00000313860 RNF175Q8N4F7 328 aa7.06□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms