RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 DCXRQ7Z4W1 244 aa11.79□□□□□ -0.52
COL3A1-201ENST00000304636 RELL2Q8NC24 303 aaPredicted RBP11.79□□□□□ -0.52
COL3A1-201ENST00000304636 OR1M1Q8NGA1 313 aa11.79□□□□□ -0.52
COL3A1-201ENST00000304636 OR5D18Q8NGL1 313 aa11.79□□□□□ -0.52
COL3A1-201ENST00000304636 ELF4Q99607 663 aaPredicted RBP11.79□□□□□ -0.52
COL3A1-201ENST00000304636 KIR3DX1Q9H7L2 352 aa11.79□□□□□ -0.52
COL3A1-201ENST00000304636 ISG20L2Q9H9L3 353 aaKnown RBP11.79□□□□□ -0.52
COL3A1-201ENST00000304636 FTSJ1Q9UET6 329 aa11.79□□□□□ -0.52
COL3A1-201ENST00000304636 B3GALT5Q9Y2C3 310 aa11.79□□□□□ -0.52
COL3A1-201ENST00000304636 HSPB2A8KAH6 182 aa11.78□□□□□ -0.52
COL3A1-201ENST00000304636 PHF1O43189 567 aaPredicted RBP11.78□□□□□ -0.52
COL3A1-201ENST00000304636 OPN1LWP04000 364 aa11.78□□□□□ -0.52
COL3A1-201ENST00000304636 OR13C7P0DN81 318 aa11.78□□□□□ -0.52
COL3A1-201ENST00000304636 EPXP11678 715 aa11.78□□□□□ -0.52
COL3A1-201ENST00000304636 HMGA1P17096 107 aaKnown RBP11.78□□□□□ -0.52
COL3A1-201ENST00000304636 GABREP78334 506 aa11.78□□□□□ -0.52
COL3A1-201ENST00000304636 STK11Q15831 433 aa11.78□□□□□ -0.52
COL3A1-201ENST00000304636 HSPB2Q16082 182 aa11.78□□□□□ -0.52
COL3A1-201ENST00000304636 KIAA1958Q8N8K9 716 aa11.78□□□□□ -0.52
COL3A1-201ENST00000304636 OR13C5Q8NGS8 318 aa11.78□□□□□ -0.52
COL3A1-201ENST00000304636 ZNF296Q8WUU4 475 aaPredicted RBP11.78□□□□□ -0.52
COL3A1-201ENST00000304636 APH1BQ8WW43 257 aa11.78□□□□□ -0.52
COL3A1-201ENST00000304636 TMED6Q8WW62 240 aa11.78□□□□□ -0.52
COL3A1-201ENST00000304636 C12orf57Q99622 126 aa11.78□□□□□ -0.52
COL3A1-201ENST00000304636 LGALS8O00214 317 aa11.78□□□□□ -0.52
COL3A1-201ENST00000304636 CRYBB2P43320 205 aa11.78□□□□□ -0.52
COL3A1-201ENST00000304636 MAP2K6P52564 334 aa11.78□□□□□ -0.52
COL3A1-201ENST00000304636 BIDP55957 195 aa11.78□□□□□ -0.52
COL3A1-201ENST00000304636 RPL27P61353 136 aaKnown RBP11.78□□□□□ -0.52
COL3A1-201ENST00000304636 SSBP1Q04837 148 aaKnown RBP11.78□□□□□ -0.52
COL3A1-201ENST00000304636 TRMT12Q53H54 448 aaKnown RBP11.78□□□□□ -0.52
COL3A1-201ENST00000304636 RNF165Q6ZSG1 346 aa11.78□□□□□ -0.52
COL3A1-201ENST00000304636 FGF13Q92913 245 aa11.78□□□□□ -0.52
COL3A1-201ENST00000304636 BADQ92934 168 aa11.78□□□□□ -0.52
COL3A1-201ENST00000304636 NKX3-1Q99801 234 aaPredicted RBP11.78□□□□□ -0.52
COL3A1-201ENST00000304636 SLC6A13Q9NSD5 602 aa11.78□□□□□ -0.52
COL3A1-201ENST00000304636 TRIM77I1YAP6 450 aa11.78□□□□□ -0.52
COL3A1-201ENST00000304636 SCGB2A1O75556 95 aa11.78□□□□□ -0.52
COL3A1-201ENST00000304636 DPP4P27487 766 aa11.78□□□□□ -0.52
COL3A1-201ENST00000304636 MFAP5Q13361 173 aa11.78□□□□□ -0.52
COL3A1-201ENST00000304636 CST9LP1Q5W188 147 aa11.78□□□□□ -0.52
COL3A1-201ENST00000304636 FAAP20Q6NZ36 180 aa11.78□□□□□ -0.52
COL3A1-201ENST00000304636 CCDC71Q8IV32 467 aaPredicted RBP11.78□□□□□ -0.52
COL3A1-201ENST00000304636 GOT1L1Q8NHS2 421 aaPredicted RBP11.78□□□□□ -0.52
COL3A1-201ENST00000304636 CMTM3Q96MX0 182 aa11.78□□□□□ -0.52
COL3A1-201ENST00000304636 TAS2R4Q9NYW5 299 aa11.78□□□□□ -0.52
COL3A1-201ENST00000304636 SUSD2Q9UGT4 822 aa11.78□□□□□ -0.52
COL3A1-201ENST00000304636 BCORQ6W2J9 1755 aa11.78□□□□□ -0.52
COL3A1-201ENST00000304636 MCRIP1C9JLW8 97 aa11.78□□□□□ -0.52
COL3A1-201ENST00000304636 BSGP35613 385 aa11.78□□□□□ -0.52
COL3A1-201ENST00000304636 DEFB103AP81534 67 aa11.78□□□□□ -0.52
COL3A1-201ENST00000304636 RBM39Q14498 530 aaKnown RBP11.78□□□□□ -0.52
COL3A1-201ENST00000304636 DEFB133Q30KQ1 61 aa11.78□□□□□ -0.52
COL3A1-201ENST00000304636 ATPAF1Q5TC12 328 aaPredicted RBP11.78□□□□□ -0.52
COL3A1-201ENST00000304636 AADACL3Q5VUY0 350 aa11.78□□□□□ -0.52
COL3A1-201ENST00000304636 SHISA6Q6ZSJ9 500 aa11.78□□□□□ -0.52
COL3A1-201ENST00000304636 C22orf15Q8WYQ4 148 aa11.78□□□□□ -0.52
COL3A1-201ENST00000304636 RNF170Q96K19 258 aa11.78□□□□□ -0.52
COL3A1-201ENST00000304636 TM7SF3Q9NS93 570 aa11.78□□□□□ -0.52
COL3A1-201ENST00000304636 A0A0B4J203 849 aa11.77□□□□□ -0.52
COL3A1-201ENST00000304636 DFFBO76075 338 aa11.77□□□□□ -0.52
COL3A1-201ENST00000304636 GALP22466 123 aa11.77□□□□□ -0.52
COL3A1-201ENST00000304636 IRS1P35568 1242 aa11.77□□□□□ -0.52
COL3A1-201ENST00000304636 RPS15P62841 145 aaKnown RBP11.77□□□□□ -0.52
COL3A1-201ENST00000304636 C1orf87Q8N0U7 546 aa11.77□□□□□ -0.52
COL3A1-201ENST00000304636 OR5L1Q8NGL2 311 aa11.77□□□□□ -0.52
COL3A1-201ENST00000304636 OR1J2Q8NGS2 313 aa11.77□□□□□ -0.52
COL3A1-201ENST00000304636 SECTM1Q8WVN6 248 aa11.77□□□□□ -0.52
COL3A1-201ENST00000304636 HRO43593 1189 aa11.77□□□□□ -0.53
COL3A1-201ENST00000304636 IL5P05113 134 aa11.77□□□□□ -0.53
COL3A1-201ENST00000304636 IRF2P14316 349 aa11.77□□□□□ -0.53
COL3A1-201ENST00000304636 SDHAP31040 664 aa11.77□□□□□ -0.53
COL3A1-201ENST00000304636 EGR3Q06889 387 aa11.77□□□□□ -0.53
COL3A1-201ENST00000304636 C17orf67Q0P5P2 114 aa11.77□□□□□ -0.53
COL3A1-201ENST00000304636 PDLIM3Q53GG5 364 aaPredicted RBP11.77□□□□□ -0.53
COL3A1-201ENST00000304636 BRICD5Q6PL45 260 aa11.77□□□□□ -0.53
COL3A1-201ENST00000304636 STAC2Q6ZMT1 411 aa11.77□□□□□ -0.53
COL3A1-201ENST00000304636 KIAA0907Q7Z7F0 614 aaPredicted RBP11.77□□□□□ -0.53
COL3A1-201ENST00000304636 MSRB3Q8IXL7 192 aa11.77□□□□□ -0.53
COL3A1-201ENST00000304636 BAP18Q8IXM2 172 aa11.77□□□□□ -0.53
COL3A1-201ENST00000304636 LRRC18Q8N456 261 aa11.77□□□□□ -0.53
COL3A1-201ENST00000304636 OR1S2Q8NGQ3 325 aa11.77□□□□□ -0.53
COL3A1-201ENST00000304636 OR13C8Q8NGS7 320 aa11.77□□□□□ -0.53
COL3A1-201ENST00000304636 OR6K3Q8NGY3 331 aa11.77□□□□□ -0.53
COL3A1-201ENST00000304636 C20orf24Q9BUV8 137 aa11.77□□□□□ -0.53
COL3A1-201ENST00000304636 TPSD1Q9BZJ3 242 aa11.77□□□□□ -0.53
COL3A1-201ENST00000304636 ENKD1Q9H0I2 346 aa11.77□□□□□ -0.53
COL3A1-201ENST00000304636 ZNF768Q9H5H4 540 aaKnown RBP11.77□□□□□ -0.53
COL3A1-201ENST00000304636 DAPP1Q9UN19 280 aa11.77□□□□□ -0.53
COL3A1-201ENST00000304636 OR2C1O95371 312 aa11.77□□□□□ -0.53
COL3A1-201ENST00000304636 CD80P33681 288 aa11.77□□□□□ -0.53
COL3A1-201ENST00000304636 UBE2MP61081 183 aaKnown RBP11.77□□□□□ -0.53
COL3A1-201ENST00000304636 ANKRD53Q8N9V6 530 aa11.77□□□□□ -0.53
COL3A1-201ENST00000304636 HMGCLL1Q8TB92 370 aa11.77□□□□□ -0.53
COL3A1-201ENST00000304636 ABHD6Q9BV23 337 aa11.77□□□□□ -0.53
COL3A1-201ENST00000304636 ARGFXA6NJG6 315 aa11.77□□□□□ -0.53
COL3A1-201ENST00000304636 FZD6O60353 706 aa11.77□□□□□ -0.53
COL3A1-201ENST00000304636 NFYBP25208 207 aa11.77□□□□□ -0.53
COL3A1-201ENST00000304636 OR9K2Q8NGE7 335 aa11.77□□□□□ -0.53
COL3A1-201ENST00000304636 UFSP2Q9NUQ7 469 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms