RNA–Protein interactions for RNA: ENST00000292510.5

VPS28-201, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 979 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-201ENST00000292510 ART1P52961 327 aa11.61□□□□□ -0.55
VPS28-201ENST00000292510 NAAAQ02083 359 aa11.61□□□□□ -0.55
VPS28-201ENST00000292510 SGCAQ16586 387 aa11.61□□□□□ -0.55
VPS28-201ENST00000292510 PGGHGQ32M88 737 aa11.61□□□□□ -0.55
VPS28-201ENST00000292510 SLC35F1Q5T1Q4 408 aa11.61□□□□□ -0.55
VPS28-201ENST00000292510 OTPQ5XKR4 325 aa11.61□□□□□ -0.55
VPS28-201ENST00000292510 C20orf204Q6ZNR8 217 aa11.61□□□□□ -0.55
VPS28-201ENST00000292510 RASSF6Q6ZTQ3 369 aa11.61□□□□□ -0.55
VPS28-201ENST00000292510 SLC16A14Q7RTX9 510 aa11.61□□□□□ -0.55
VPS28-201ENST00000292510 FAM169BQ8N8A8 192 aa11.61□□□□□ -0.55
VPS28-201ENST00000292510 OR4K13Q8NH42 304 aa11.61□□□□□ -0.55
VPS28-201ENST00000292510 SMAP2Q8WU79 429 aaPredicted RBP11.61□□□□□ -0.55
VPS28-201ENST00000292510 ZNF75AQ96N20 296 aa11.61□□□□□ -0.55
VPS28-201ENST00000292510 FEVQ99581 238 aa11.61□□□□□ -0.55
VPS28-201ENST00000292510 DGCR6LQ9BY27 220 aa11.61□□□□□ -0.55
VPS28-201ENST00000292510 RERGLQ9H628 205 aa11.61□□□□□ -0.55
VPS28-201ENST00000292510 LAMP3Q9UQV4 416 aa11.61□□□□□ -0.55
VPS28-201ENST00000292510 IGHV2OR16-5A0A0B4J2B6 119 aa11.6□□□□□ -0.55
VPS28-201ENST00000292510 BHLHE40O14503 412 aa11.6□□□□□ -0.55
VPS28-201ENST00000292510 SLC16A7O60669 478 aa11.6□□□□□ -0.55
VPS28-201ENST00000292510 RAB36O95755 333 aa11.6□□□□□ -0.55
VPS28-201ENST00000292510 TP53P04637 393 aaPredicted RBP11.6□□□□□ -0.55
VPS28-201ENST00000292510 SCG5P05408 212 aa11.6□□□□□ -0.55
VPS28-201ENST00000292510 DANCRP0C864 163 aa11.6□□□□□ -0.55
VPS28-201ENST00000292510 APEHP13798 732 aaKnown RBP11.6□□□□□ -0.55
VPS28-201ENST00000292510 HIST1H1CP16403 213 aaKnown RBP11.6□□□□□ -0.55
VPS28-201ENST00000292510 ZNF14P17017 642 aaPredicted RBP11.6□□□□□ -0.55
VPS28-201ENST00000292510 PAX7P23759 505 aa11.6□□□□□ -0.55
VPS28-201ENST00000292510 LAP3P28838 519 aa11.6□□□□□ -0.55
VPS28-201ENST00000292510 MRPS34P82930 218 aaKnown RBP11.6□□□□□ -0.55
VPS28-201ENST00000292510 GK3PQ14409 553 aa11.6□□□□□ -0.55
VPS28-201ENST00000292510 RAB39AQ14964 217 aa11.6□□□□□ -0.55
VPS28-201ENST00000292510 DEFB113Q30KQ7 82 aa11.6□□□□□ -0.55
VPS28-201ENST00000292510 C3orf36Q3SXR2 165 aa11.6□□□□□ -0.55
VPS28-201ENST00000292510 LEG1Q6P5S2 330 aa11.6□□□□□ -0.55
VPS28-201ENST00000292510 JAZF1Q86VZ6 243 aa11.6□□□□□ -0.55
VPS28-201ENST00000292510 ZNF584Q8IVC4 421 aa11.6□□□□□ -0.55
VPS28-201ENST00000292510 DEPDC4Q8N2C3 294 aa11.6□□□□□ -0.55
VPS28-201ENST00000292510 SDR9C7Q8NEX9 313 aa11.6□□□□□ -0.55
VPS28-201ENST00000292510 OR52L1Q8NGH7 329 aa11.6□□□□□ -0.55
VPS28-201ENST00000292510 FNDC8Q8TC99 324 aa11.6□□□□□ -0.55
VPS28-201ENST00000292510 TSSK2Q96PF2 358 aa11.6□□□□□ -0.55
VPS28-201ENST00000292510 NMNAT3Q96T66 252 aa11.6□□□□□ -0.55
VPS28-201ENST00000292510 KCNS3Q9BQ31 491 aa11.6□□□□□ -0.55
VPS28-201ENST00000292510 TSSK6Q9BXA6 273 aa11.6□□□□□ -0.55
VPS28-201ENST00000292510 RNF121Q9H920 327 aa11.6□□□□□ -0.55
VPS28-201ENST00000292510 SIAEQ9HAT2 523 aa11.6□□□□□ -0.55
VPS28-201ENST00000292510 ARMC1Q9NVT9 282 aa11.6□□□□□ -0.55
VPS28-201ENST00000292510 IL20Q9NYY1 176 aa11.6□□□□□ -0.55
VPS28-201ENST00000292510 VSX1Q9NZR4 365 aaPredicted RBP11.6□□□□□ -0.55
VPS28-201ENST00000292510 EDARQ9UNE0 448 aa11.6□□□□□ -0.55
VPS28-201ENST00000292510 HEATR1Q9H583 2144 aaKnown RBP11.6□□□□□ -0.55
VPS28-201ENST00000292510 DSCAMO60469 2012 aa11.59□□□□□ -0.55
VPS28-201ENST00000292510 DCTN6O00399 190 aa11.59□□□□□ -0.55
VPS28-201ENST00000292510 ARPC3O15145 178 aa11.59□□□□□ -0.55
VPS28-201ENST00000292510 GPANK1O95872 356 aa11.59□□□□□ -0.55
VPS28-201ENST00000292510 CRYAAP02489 173 aa11.59□□□□□ -0.55
VPS28-201ENST00000292510 GSTM3P21266 225 aa11.59□□□□□ -0.55
VPS28-201ENST00000292510 NOS3P29474 1203 aa11.59□□□□□ -0.55
VPS28-201ENST00000292510 KPNB1Q14974 876 aaKnown RBP11.59□□□□□ -0.55
VPS28-201ENST00000292510 SLC36A2Q495M3 483 aa11.59□□□□□ -0.55
VPS28-201ENST00000292510 NRN1LQ496H8 165 aa11.59□□□□□ -0.55
VPS28-201ENST00000292510 UGT2A3Q6UWM9 527 aa11.59□□□□□ -0.55
VPS28-201ENST00000292510 FOXL2NBQ6ZUU3 175 aa11.59□□□□□ -0.55
VPS28-201ENST00000292510 ADCK1Q86TW2 530 aa11.59□□□□□ -0.55
VPS28-201ENST00000292510 OR4Q3Q8NH05 313 aa11.59□□□□□ -0.55
VPS28-201ENST00000292510 IGFBPL1Q8WX77 278 aa11.59□□□□□ -0.55
VPS28-201ENST00000292510 MBD6Q96DN6 1003 aa11.59□□□□□ -0.55
VPS28-201ENST00000292510 FBXO17Q96EF6 278 aa11.59□□□□□ -0.55
VPS28-201ENST00000292510 NUAK2Q9H093 628 aa11.59□□□□□ -0.55
VPS28-201ENST00000292510 FN3KQ9H479 309 aa11.59□□□□□ -0.55
VPS28-201ENST00000292510 MOV10Q9HCE1 1003 aaKnown RBP11.59□□□□□ -0.55
VPS28-201ENST00000292510 EMC7Q9NPA0 242 aa11.59□□□□□ -0.55
VPS28-201ENST00000292510 POLE4Q9NR33 117 aa11.59□□□□□ -0.55
VPS28-201ENST00000292510 TBC1D23Q9NUY8 699 aa11.59□□□□□ -0.55
VPS28-201ENST00000292510 COA3Q9Y2R0 106 aaPredicted RBP11.59□□□□□ -0.55
VPS28-201ENST00000292510 AP4S1Q9Y587 144 aa11.59□□□□□ -0.55
VPS28-201ENST00000292510 PRRC2AP48634 2157 aaKnown RBP11.59□□□□□ -0.55
VPS28-201ENST00000292510 USF3Q68DE3 2245 aa11.59□□□□□ -0.55
VPS28-201ENST00000292510 ARRDC5A6NEK1 342 aa11.58□□□□□ -0.56
VPS28-201ENST00000292510 AHCYL1O43865 530 aa11.58□□□□□ -0.56
VPS28-201ENST00000292510 MGRN1O60291 552 aa11.58□□□□□ -0.56
VPS28-201ENST00000292510 ENTPD5O75356 428 aa11.58□□□□□ -0.56
VPS28-201ENST00000292510 DEAF1O75398 565 aaPredicted RBP11.58□□□□□ -0.56
VPS28-201ENST00000292510 KHDRBS3O75525 346 aaKnown RBP11.58□□□□□ -0.56
VPS28-201ENST00000292510 MPZL1O95297 269 aa11.58□□□□□ -0.56
VPS28-201ENST00000292510 CD8AP01732 235 aa11.58□□□□□ -0.56
VPS28-201ENST00000292510 MMP7P09237 267 aaPredicted RBP11.58□□□□□ -0.56
VPS28-201ENST00000292510 CCL2P13500 99 aa11.58□□□□□ -0.56
VPS28-201ENST00000292510 ZNF32P17041 273 aa11.58□□□□□ -0.56
VPS28-201ENST00000292510 NPR2P20594 1047 aa11.58□□□□□ -0.56
VPS28-201ENST00000292510 FABP6P51161 128 aa11.58□□□□□ -0.56
VPS28-201ENST00000292510 HGFACQ04756 655 aa11.58□□□□□ -0.56
VPS28-201ENST00000292510 ENDOGQ14249 297 aaKnown RBP11.58□□□□□ -0.56
VPS28-201ENST00000292510 TESK1Q15569 626 aa11.58□□□□□ -0.56
VPS28-201ENST00000292510 ATP6AP1Q15904 470 aa11.58□□□□□ -0.56
VPS28-201ENST00000292510 SLC36A3Q495N2 470 aa11.58□□□□□ -0.56
VPS28-201ENST00000292510 FAM27BQ5VT28 67 aa11.58□□□□□ -0.56
VPS28-201ENST00000292510 RPL13AP3Q6NVV1 102 aa11.58□□□□□ -0.56
VPS28-201ENST00000292510 TMEM53Q6P2H8 277 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms