RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 ELF3P78545 371 aaPredicted RBP11.13□□□□□ -0.63
SS18-202ENST00000269138 MRPS34P82930 218 aaKnown RBP11.13□□□□□ -0.63
SS18-202ENST00000269138 PPP2R2BQ00005 443 aa11.13□□□□□ -0.63
SS18-202ENST00000269138 CDK5Q00535 292 aa11.13□□□□□ -0.63
SS18-202ENST00000269138 BEX5Q5H9J7 111 aa11.13□□□□□ -0.63
SS18-202ENST00000269138 MDP1Q86V88 176 aa11.13□□□□□ -0.63
SS18-202ENST00000269138 PARP8Q8N3A8 854 aa11.13□□□□□ -0.63
SS18-202ENST00000269138 LRRC18Q8N456 261 aa11.13□□□□□ -0.63
SS18-202ENST00000269138 SLC37A3Q8NCC5 494 aa11.13□□□□□ -0.63
SS18-202ENST00000269138 DNAJC9Q8WXX5 260 aa11.13□□□□□ -0.63
SS18-202ENST00000269138 OSBPL10Q9BXB5 764 aa11.13□□□□□ -0.63
SS18-202ENST00000269138 SEC61A2Q9H9S3 476 aa11.13□□□□□ -0.63
SS18-202ENST00000269138 OBP2BQ9NPH6 170 aa11.13□□□□□ -0.63
SS18-202ENST00000269138 RPRD1BQ9NQG5 326 aaKnown RBP11.13□□□□□ -0.63
SS18-202ENST00000269138 B3GNT2Q9NY97 397 aa11.13□□□□□ -0.63
SS18-202ENST00000269138 B9D1Q9UPM9 204 aa11.13□□□□□ -0.63
SS18-202ENST00000269138 BAIAP2Q9UQB8 552 aa11.13□□□□□ -0.63
SS18-202ENST00000269138 COA3Q9Y2R0 106 aaPredicted RBP11.13□□□□□ -0.63
SS18-202ENST00000269138 FBN2P35556 2912 aa11.13□□□□□ -0.63
SS18-202ENST00000269138 NBPF19A0A087WUL8 3843 aa11.12□□□□□ -0.63
SS18-202ENST00000269138 KHDRBS3O75525 346 aaKnown RBP11.12□□□□□ -0.63
SS18-202ENST00000269138 MPZL1O95297 269 aa11.12□□□□□ -0.63
SS18-202ENST00000269138 RENP00797 406 aa11.12□□□□□ -0.63
SS18-202ENST00000269138 CELA3BP08861 270 aa11.12□□□□□ -0.63
SS18-202ENST00000269138 GRK5P34947 590 aa11.12□□□□□ -0.63
SS18-202ENST00000269138 POLR2IP36954 125 aaKnown RBP11.12□□□□□ -0.63
SS18-202ENST00000269138 BSPH1Q075Z2 132 aa11.12□□□□□ -0.63
SS18-202ENST00000269138 CRMP1Q14194 572 aa11.12□□□□□ -0.63
SS18-202ENST00000269138 RCN1Q15293 331 aa11.12□□□□□ -0.63
SS18-202ENST00000269138 NCMAPQ5T1S8 102 aa11.12□□□□□ -0.63
SS18-202ENST00000269138 SLC27A4Q6P1M0 643 aa11.12□□□□□ -0.63
SS18-202ENST00000269138 UGT2A3Q6UWM9 527 aa11.12□□□□□ -0.63
SS18-202ENST00000269138 FOXL2NBQ6ZUU3 175 aa11.12□□□□□ -0.63
SS18-202ENST00000269138 MYPOPQ86VE0 399 aaPredicted RBP11.12□□□□□ -0.63
SS18-202ENST00000269138 TMEM200AQ86VY9 491 aa11.12□□□□□ -0.63
SS18-202ENST00000269138 OR6V1Q8N148 313 aa11.12□□□□□ -0.63
SS18-202ENST00000269138 CBR4Q8N4T8 237 aa11.12□□□□□ -0.63
SS18-202ENST00000269138 ZNRF4Q8WWF5 429 aa11.12□□□□□ -0.63
SS18-202ENST00000269138 SNX18Q96RF0 628 aa11.12□□□□□ -0.63
SS18-202ENST00000269138 SIAEQ9HAT2 523 aa11.12□□□□□ -0.63
SS18-202ENST00000269138 EMC7Q9NPA0 242 aa11.12□□□□□ -0.63
SS18-202ENST00000269138 NGBQ9NPG2 151 aa11.12□□□□□ -0.63
SS18-202ENST00000269138 IGLV1-36A0A0B4J1U3 117 aa11.11□□□□□ -0.63
SS18-202ENST00000269138 IGHV1-18A0A0C4DH31 117 aa11.11□□□□□ -0.63
SS18-202ENST00000269138 EI24O14681 340 aa11.11□□□□□ -0.63
SS18-202ENST00000269138 ANPEPP15144 967 aa11.11□□□□□ -0.63
SS18-202ENST00000269138 CBR1P16152 277 aa11.11□□□□□ -0.63
SS18-202ENST00000269138 IGFBP5P24593 272 aa11.11□□□□□ -0.63
SS18-202ENST00000269138 LAP3P28838 519 aa11.11□□□□□ -0.63
SS18-202ENST00000269138 PYCR1P32322 319 aa11.11□□□□□ -0.63
SS18-202ENST00000269138 CENPAP49450 140 aa11.11□□□□□ -0.63
SS18-202ENST00000269138 SPOCK1Q08629 439 aa11.11□□□□□ -0.63
SS18-202ENST00000269138 DAG1Q14118 895 aa11.11□□□□□ -0.63
SS18-202ENST00000269138 PTGES3Q15185 160 aaKnown RBP11.11□□□□□ -0.63
SS18-202ENST00000269138 FBXW10Q5XX13 1052 aa11.11□□□□□ -0.63
SS18-202ENST00000269138 CCDC36Q8IYA8 594 aa11.11□□□□□ -0.63
SS18-202ENST00000269138 OR9Q1Q8NGQ5 310 aa11.11□□□□□ -0.63
SS18-202ENST00000269138 ZNF75AQ96N20 296 aa11.11□□□□□ -0.63
SS18-202ENST00000269138 SLC29A1Q99808 456 aa11.11□□□□□ -0.63
SS18-202ENST00000269138 RBM4BQ9BQ04 359 aaKnown RBP11.11□□□□□ -0.63
SS18-202ENST00000269138 RBM4Q9BWF3 364 aaKnown RBP11.11□□□□□ -0.63
SS18-202ENST00000269138 CLEC4MQ9H2X3 399 aaPredicted RBP11.11□□□□□ -0.63
SS18-202ENST00000269138 MED20Q9H944 212 aa11.11□□□□□ -0.63
SS18-202ENST00000269138 SLC25A19Q9HC21 320 aa11.11□□□□□ -0.63
SS18-202ENST00000269138 POLE4Q9NR33 117 aa11.11□□□□□ -0.63
SS18-202ENST00000269138 CMC2Q9NRP2 79 aa11.11□□□□□ -0.63
SS18-202ENST00000269138 KLHL21Q9UJP4 597 aa11.11□□□□□ -0.63
SS18-202ENST00000269138 ABCA4P78363 2273 aa11.11□□□□□ -0.63
SS18-202ENST00000269138 FAM183AA6NL82 134 aa11.1□□□□□ -0.63
SS18-202ENST00000269138 FARS2O95363 451 aaKnown RBP11.1□□□□□ -0.63
SS18-202ENST00000269138 IGLV1-44P01699 117 aa11.1□□□□□ -0.63
SS18-202ENST00000269138 ALPLP05186 524 aa11.1□□□□□ -0.63
SS18-202ENST00000269138 NPR2P20594 1047 aa11.1□□□□□ -0.63
SS18-202ENST00000269138 CD40P25942 277 aa11.1□□□□□ -0.63
SS18-202ENST00000269138 CRABP1P29762 137 aa11.1□□□□□ -0.63
SS18-202ENST00000269138 PTDSS1P48651 473 aaKnown RBP11.1□□□□□ -0.63
SS18-202ENST00000269138 IDH3GP51553 393 aaPredicted RBP11.1□□□□□ -0.63
SS18-202ENST00000269138 ESRRGP62508 458 aa11.1□□□□□ -0.63
SS18-202ENST00000269138 RAB1AP62820 205 aa11.1□□□□□ -0.63
SS18-202ENST00000269138 NPRL3Q12980 569 aa11.1□□□□□ -0.63
SS18-202ENST00000269138 ENDOGQ14249 297 aaKnown RBP11.1□□□□□ -0.63
SS18-202ENST00000269138 GSG1Q2KHT4 349 aa11.1□□□□□ -0.63
SS18-202ENST00000269138 NRN1LQ496H8 165 aa11.1□□□□□ -0.63
SS18-202ENST00000269138 FAM27BQ5VT28 67 aa11.1□□□□□ -0.63
SS18-202ENST00000269138 SSX8Q7RTT4 187 aa11.1□□□□□ -0.63
SS18-202ENST00000269138 SLC16A14Q7RTX9 510 aa11.1□□□□□ -0.63
SS18-202ENST00000269138 ZSCAN2Q7Z7L9 614 aaPredicted RBP11.1□□□□□ -0.63
SS18-202ENST00000269138 ZBTB46Q86UZ6 589 aa11.1□□□□□ -0.63
SS18-202ENST00000269138 CDC20BQ86Y33 519 aa11.1□□□□□ -0.63
SS18-202ENST00000269138 GLB1L2Q8IW92 636 aa11.1□□□□□ -0.63
SS18-202ENST00000269138 OR51L1Q8NGJ5 315 aa11.1□□□□□ -0.63
SS18-202ENST00000269138 C11orf40Q8WZ69 217 aa11.1□□□□□ -0.63
SS18-202ENST00000269138 NRGNQ92686 78 aa11.1□□□□□ -0.63
SS18-202ENST00000269138 NEUROG1Q92886 237 aa11.1□□□□□ -0.63
SS18-202ENST00000269138 FBXO17Q96EF6 278 aa11.1□□□□□ -0.63
SS18-202ENST00000269138 MS4A3Q96HJ5 214 aa11.1□□□□□ -0.63
SS18-202ENST00000269138 SLC38A2Q96QD8 506 aa11.1□□□□□ -0.63
SS18-202ENST00000269138 TMEM204Q9BSN7 226 aa11.1□□□□□ -0.63
SS18-202ENST00000269138 ZNF416Q9BWM5 594 aa11.1□□□□□ -0.63
SS18-202ENST00000269138 HCAR1Q9BXC0 346 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms