RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 C22orf39Q6P5X5 142 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 SLC24A5Q71RS6 500 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 OR51A7Q8NH64 312 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 PPP1R1CQ8WVI7 109 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 SHISA4Q96DD7 197 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 PIK3IP1Q96FE7 263 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 ZNF442Q9H7R0 627 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 IL17CQ9P0M4 197 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 SLC7A7Q9UM01 511 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 POM121BA6NF01 834 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 SLC17A2O00624 439 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 SHC1P29353 583 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 SLC11A1P49279 550 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 LRFN4Q6PJG9 635 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 FAM216AQ8WUB2 273 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 SMOQ99835 787 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 ZNF226Q9NYT6 803 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 USP36Q9P275 1121 aaKnown RBP4.31□□□□□ -1.72
SCN1A-220ENST00000641603 WRAP73Q9P2S5 460 aaPredicted RBP4.31□□□□□ -1.72
SCN1A-220ENST00000641603 ZNF443Q9Y2A4 671 aaPredicted RBP4.31□□□□□ -1.72
SCN1A-220ENST00000641603 TP53TG5Q9Y2B4 290 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 IGKV6-21A0A0C4DH24 114 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 LOC102725191A0A1B0GVB3 256 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 ANTXRLA6NF34 631 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 MT-ATP6P00846 226 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 EIF4EP06730 217 aaKnown RBP4.3□□□□□ -1.72
SCN1A-220ENST00000641603 CLEC2LP0C7M8 214 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 EFNA3P52797 238 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 TIGITQ495A1 244 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 C8orf82Q6P1X6 216 aaPredicted RBP4.3□□□□□ -1.72
SCN1A-220ENST00000641603 RPS27LQ71UM5 84 aaKnown RBP4.3□□□□□ -1.72
SCN1A-220ENST00000641603 SLC35E3Q7Z769 313 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 MISPQ8IVT2 679 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 ZNF321PQ8N8H1 164 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 OR51A2Q8NGJ7 313 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 OR51T1Q8NGJ9 327 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 NUDT16L1Q9BRJ7 211 aaKnown RBP4.3□□□□□ -1.72
SCN1A-220ENST00000641603 GHITMQ9H3K2 345 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 MYOTQ9UBF9 498 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 LAMA4Q16363 1823 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 MBTPS2O43462 519 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 COX5AP20674 150 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 G0S2P27469 103 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 DIO1P49895 249 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 DCAF7P61962 342 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 GPR18Q14330 331 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 PDLIM3Q53GG5 364 aaPredicted RBP4.3□□□□□ -1.72
SCN1A-220ENST00000641603 NHLRC3Q5JS37 347 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 LEG1Q6P5S2 330 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 ZNF383Q8NA42 475 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 FTSJ1Q9UET6 329 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 C5P01031 1676 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 CCDC88AQ3V6T2 1871 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 GLAP06280 429 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 PTGFRP43088 359 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 RPL24P83731 157 aaKnown RBP4.3□□□□□ -1.72
SCN1A-220ENST00000641603 MEP1BQ16820 701 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 Q7L0L9 218 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 GRASPQ7Z6J2 395 aaPredicted RBP4.3□□□□□ -1.72
SCN1A-220ENST00000641603 ZDHHC11Q9H8X9 412 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 TMEM9BQ9NQ34 198 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 ST6GAL1P15907 406 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 CD1CP29017 333 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 ATP1B3P54709 279 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 CLRN1P58418 232 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 MEF2AQ02078 507 aaPredicted RBP4.3□□□□□ -1.72
SCN1A-220ENST00000641603 PTPRCAPQ14761 206 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 NLGN4XQ8N0W4 816 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 NLGN4YQ8NFZ3 816 aaPredicted RBP4.3□□□□□ -1.72
SCN1A-220ENST00000641603 DAZAP1Q96EP5 407 aaKnown RBP4.3□□□□□ -1.72
SCN1A-220ENST00000641603 CAPNS2Q96L46 248 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 GPR160Q9UJ42 338 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 LOXHD1Q8IVV2 1947 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 CCL15-CCL14A0A0B4J2E2 113 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 SLC22A20A6NK97 555 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 SERPINE3A8MV23 424 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 GRXCR1A8MXD5 290 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 PLPP2O43688 288 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 KNG1P01042 644 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 EPHA1P21709 976 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 AADACP22760 399 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 HOXC12P31275 282 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 POU3F4P49335 361 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 ARSDP51689 593 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 PMCHL1Q16048 86 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 CCL15Q16663 113 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 EOGTQ5NDL2 527 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 RTP2Q5QGT7 225 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 TMPRSS7Q7RTY8 843 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 OR51Q1Q8NH59 317 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 PPP1R35Q8TAP8 253 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 PHOSPHO1Q8TCT1 267 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 OR10C1Q96KK4 312 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 ELP3Q9H9T3 547 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 BAZ2BQ9UIF8 2168 aaKnown RBP4.3□□□□□ -1.72
SCN1A-220ENST00000641603 CD82P27701 267 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 PCBD1P61457 104 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 FAM3AP98173 230 aa4.3□□□□□ -1.72
SCN1A-220ENST00000641603 RGS7BPQ6MZT1 257 aaPredicted RBP4.3□□□□□ -1.72
SCN1A-220ENST00000641603 CMTM4Q8IZR5 234 aa4.3□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms