RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 PACSIN2Q9UNF0 486 aaPredicted RBP0.12□□□□□ -2.39
VPS35-212ENST00000640313 COPS3Q9UNS2 423 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 MRPS33Q9Y291 106 aaKnown RBP0.12□□□□□ -2.39
VPS35-212ENST00000640313 KCNIP3Q9Y2W7 256 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 OR10H1Q9Y4A9 318 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 MRPS18BQ9Y676 258 aaKnown RBP0.12□□□□□ -2.39
VPS35-212ENST00000640313 LTBP4Q8N2S1 1624 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 CACNA1DQ01668 2161 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 GPATCH8Q9UKJ3 1502 aaKnown RBP0.12□□□□□ -2.39
VPS35-212ENST00000640313 NLRC5Q86WI3 1866 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 MYO16Q9Y6X6 1858 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 ATP8B3O60423 1300 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 CDHR2Q9BYE9 1310 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 CENPJQ9HC77 1338 aaPredicted RBP0.12□□□□□ -2.39
VPS35-212ENST00000640313 FANCIQ9NVI1 1328 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 FSIP2Q5CZC0 6907 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 VWDEQ8N2E2 1590 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 BRWD3Q6RI45 1802 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 TUBGCP6Q96RT7 1819 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 MSH6P52701 1360 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 GPRASP1Q5JY77 1395 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 IGHV3-72A0A0B4J1Y9 119 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 IGKV1-8A0A0C4DH67 115 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 CIB4A0PJX0 185 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 METTL21EPA6NDL7 271 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 FAM47DPA6NHR8 397 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 SNTNA6NMZ2 147 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 A8MUI8 341 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP0.11□□□□□ -2.39
VPS35-212ENST00000640313 K7EMT4 169 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 K7EPI3 171 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 DNASE2O00115 360 aaPredicted RBP0.11□□□□□ -2.39
VPS35-212ENST00000640313 HIP1O00291 1037 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 FOXE1O00358 373 aaPredicted RBP0.11□□□□□ -2.39
VPS35-212ENST00000640313 CCL21O00585 134 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 ANGPT2O15123 496 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 KMOO15229 486 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 MED7O43513 233 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 CBR3O75828 277 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 CLPXO76031 633 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 VAMP5O95183 116 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 CLDN9O95484 217 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 OXSR1O95747 527 aaPredicted RBP0.11□□□□□ -2.39
VPS35-212ENST00000640313 AIFM1O95831 613 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 TSPAN12O95859 305 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 LHBP01229 141 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 IFNB1P01574 187 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 IGLV3-25P01717 112 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 APCSP02743 223 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 ZNF688P0C7X2 276 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 ZNF806P0C7X5 589 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 ZNF735P0CB33 412 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 INAFM2P0DMQ5 153 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 C1GALT1C1LP0DN25 315 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 EPB41P11171 864 aaKnown RBP0.11□□□□□ -2.39
VPS35-212ENST00000640313 HPGDP15428 266 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 NCK1P16333 377 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 ABOP16442 354 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 STMN1P16949 149 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 ZNF43P17038 809 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 ARF4P18085 180 aaPredicted RBP0.11□□□□□ -2.39
VPS35-212ENST00000640313 TCN1P20061 433 aaPredicted RBP0.11□□□□□ -2.39
VPS35-212ENST00000640313 TCN2P20062 427 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 HMGB2P26583 209 aaKnown RBP0.11□□□□□ -2.39
VPS35-212ENST00000640313 ANXA13P27216 316 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 MAPK3P27361 379 aaPredicted RBP0.11□□□□□ -2.39
VPS35-212ENST00000640313 RORAP35398 523 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 MAS1LP35410 378 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 SERPINB5P36952 375 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 EPS15P42566 896 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 CDKN2BP42772 138 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 NAMPTP43490 491 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 CYB561P49447 251 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 GDI2P50395 445 aaKnown RBP0.11□□□□□ -2.39
VPS35-212ENST00000640313 RORCP51449 518 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 GPM6AP51674 278 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 ATP1B3P54709 279 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 PRRX1P54821 245 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 CDH4P55283 916 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 ELF3P78545 371 aaPredicted RBP0.11□□□□□ -2.39
VPS35-212ENST00000640313 CBX1P83916 185 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 PITPNAQ00169 270 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 MEF2CQ06413 473 aaPredicted RBP0.11□□□□□ -2.39
VPS35-212ENST00000640313 SCRN3Q0VDG4 424 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 BAMBIQ13145 260 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 MAB21L1Q13394 359 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 ZNF235Q14590 738 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 MESDQ14696 234 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 IRF4Q15306 451 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 RBMY1FQ15415 496 aaKnown RBP0.11□□□□□ -2.39
VPS35-212ENST00000640313 RGNQ15493 299 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 ZNF726P1Q15940 193 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 PDK4Q16654 411 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 TATDN3Q17R31 274 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 USH1GQ495M9 461 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 SLC36A3Q495N2 470 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 KCTD21Q4G0X4 260 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 FILIP1LQ4L180 1135 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 SMUG1Q53HV7 270 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 PCOTHQ58A44 107 aa0.11□□□□□ -2.39
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms