RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 A6NJ64 397 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 PRR19A6NJB7 356 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 ZNF891A8MT65 544 aaPredicted RBP3.62□□□□□ -1.83
SCN1A-214ENST00000637038 BLOC1S5-TXNDC5H3BN57 136 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 TEX46H3BTG2 121 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 EIF1AYO14602 144 aaKnown RBP3.62□□□□□ -1.83
SCN1A-214ENST00000637038 NDUFA2O43678 99 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 FGF17O60258 216 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 PMS2P2O95744 297 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 HOXB2P14652 356 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 CXCR1P25024 350 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 PSMB10P40306 273 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 EIF1AXP47813 144 aaKnown RBP3.62□□□□□ -1.83
SCN1A-214ENST00000637038 SOX2P48431 317 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 POU3F4P49335 361 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 P2RX1P51575 399 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 CTXN1P60606 82 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 DHODHQ02127 395 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 Q3ZCU0 254 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 C14orf28Q4W4Y0 310 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 ZNF626Q68DY1 528 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 TMUB2Q71RG4 321 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 CA13Q8N1Q1 262 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 COQ8AQ8NI60 647 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 ZNF707Q96C28 371 aaPredicted RBP3.62□□□□□ -1.83
SCN1A-214ENST00000637038 RSPRY1Q96DX4 576 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 TM4SF19Q96DZ7 209 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 CCDC120Q96HB5 630 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 DERL3Q96Q80 235 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 OR2A5Q96R48 311 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 WDR76Q9H967 626 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 SYNPO2LQ9H987 977 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 FGF22Q9HCT0 170 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 DNAJB12Q9NXW2 375 aaKnown RBP3.62□□□□□ -1.83
SCN1A-214ENST00000637038 CHRNA9Q9UGM1 479 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 ICAM5Q9UMF0 924 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 AUP1Q9Y679 476 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 MUC3AQ02505 3323 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 A0A087WUJ7 227 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 ACOD1A6NK06 481 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 TMEM150CB9EJG8 249 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 GOSR2O14653 212 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 ARPC5O15511 151 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 XRCC3O43542 346 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 CTNSO60931 367 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 LDB3O75112 727 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 GLSO94925 669 aaPredicted RBP3.62□□□□□ -1.83
SCN1A-214ENST00000637038 CYB5AP00167 134 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 ITPKBP27987 946 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 BTCP35070 178 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 CASRP41180 1078 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 RABIFP47224 123 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 ERVK-25P63136 954 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 ADAM8P78325 824 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 ZMYND11Q15326 602 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 PRICKLE4Q2TBC4 344 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 LGALSLQ3ZCW2 172 aaPredicted RBP3.62□□□□□ -1.83
SCN1A-214ENST00000637038 TSSK4Q6SA08 328 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 PRSS42Q7Z5A4 293 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 LSRQ86X29 649 aaPredicted RBP3.62□□□□□ -1.83
SCN1A-214ENST00000637038 CDH26Q8IXH8 852 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 OR5T2Q8NGG2 359 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 BAHD1Q8TBE0 780 aaPredicted RBP3.62□□□□□ -1.83
SCN1A-214ENST00000637038 FOXRED1Q96CU9 486 aaPredicted RBP3.62□□□□□ -1.83
SCN1A-214ENST00000637038 SCARF2Q96GP6 870 aaPredicted RBP3.62□□□□□ -1.83
SCN1A-214ENST00000637038 PTCHD1Q96NR3 888 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 SCGB3A2Q96PL1 93 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 NMNAT3Q96T66 252 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 HCAR1Q9BXC0 346 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 SLC25A32Q9H2D1 315 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 NARFLQ9H6Q4 476 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 AUNIPQ9H7T9 357 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 UBQLN4Q9NRR5 601 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 TBC1D29Q9UFV1 150 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 GPN3Q9UHW5 284 aaPredicted RBP3.62□□□□□ -1.83
SCN1A-214ENST00000637038 DHDHQ9UQ10 334 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 TRBV23OR9-2A0A075B6M9 112 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 LOC100289279A0A1B0GTE1 492 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 C10orf142B7Z368 130 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 C4orf51C9J302 202 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 MKRN2OSH3BPM6 223 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 SELENOFO60613 162 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 THY1P04216 161 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 SMIM10L1P0DMW3 83 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 CXCL3P19876 107 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 CDK2P24941 298 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 IL12BP29460 328 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 PEBP1P30086 187 aaKnown RBP3.62□□□□□ -1.83
SCN1A-214ENST00000637038 SDHAP31040 664 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 RAD52P43351 418 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 SOX9P48436 509 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 ARL4DP49703 201 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 RIDAP52758 137 aaKnown RBP3.62□□□□□ -1.83
SCN1A-214ENST00000637038 ADPRHP54922 357 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 CBFBQ13951 182 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 RAB12Q6IQ22 244 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 FBXO42Q6P3S6 717 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 C5orf46Q6UWT4 87 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 ARSKQ6UWY0 536 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 STAC2Q6ZMT1 411 aa3.62□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms