RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 CACNA1AO00555 2505 aa17.86■□□□□ 0.45
CLN3-250ENST00000636839 ZNF726A6NNF4 738 aa17.86■□□□□ 0.45
CLN3-250ENST00000636839 IGHG1P01857 330 aa17.86■□□□□ 0.45
CLN3-250ENST00000636839 SCG5P05408 212 aa17.86■□□□□ 0.45
CLN3-250ENST00000636839 FAM87AP0C7U9 286 aa17.86■□□□□ 0.45
CLN3-250ENST00000636839 CD36P16671 472 aa17.86■□□□□ 0.45
CLN3-250ENST00000636839 OR12D2P58182 307 aa17.86■□□□□ 0.45
CLN3-250ENST00000636839 POU4F2Q12837 409 aa17.86■□□□□ 0.45
CLN3-250ENST00000636839 GALEQ14376 348 aa17.86■□□□□ 0.45
CLN3-250ENST00000636839 POU4F3Q15319 338 aa17.86■□□□□ 0.45
CLN3-250ENST00000636839 SSX1Q16384 188 aa17.86■□□□□ 0.45
CLN3-250ENST00000636839 CNPY1Q3B7I2 92 aa17.86■□□□□ 0.45
CLN3-250ENST00000636839 FAM205BPQ63HN1 556 aa17.86■□□□□ 0.45
CLN3-250ENST00000636839 ABLIM2Q6H8Q1 611 aa17.86■□□□□ 0.45
CLN3-250ENST00000636839 ZNF322Q6U7Q0 402 aaPredicted RBP17.86■□□□□ 0.45
CLN3-250ENST00000636839 POMGNT2Q8NAT1 580 aa17.86■□□□□ 0.45
CLN3-250ENST00000636839 OR2M2Q96R28 347 aa17.86■□□□□ 0.45
CLN3-250ENST00000636839 TIGARQ9NQ88 270 aa17.86■□□□□ 0.45
CLN3-250ENST00000636839 B3GNT3Q9Y2A9 372 aa17.86■□□□□ 0.45
CLN3-250ENST00000636839 FLVCR1Q9Y5Y0 555 aa17.86■□□□□ 0.45
CLN3-250ENST00000636839 RGS6P49758 472 aa17.85■□□□□ 0.45
CLN3-250ENST00000636839 LSM3P62310 102 aaKnown RBP17.85■□□□□ 0.45
CLN3-250ENST00000636839 RASGEF1BQ0VAM2 473 aa17.85■□□□□ 0.45
CLN3-250ENST00000636839 DPY19L4Q7Z388 723 aa17.85■□□□□ 0.45
CLN3-250ENST00000636839 SIAH3Q8IW03 269 aa17.85■□□□□ 0.45
CLN3-250ENST00000636839 NOXO1Q8NFA2 376 aa17.85■□□□□ 0.45
CLN3-250ENST00000636839 RSL24D1Q9UHA3 163 aaKnown RBP17.85■□□□□ 0.45
CLN3-250ENST00000636839 CLEC4AQ9UMR7 237 aa17.85■□□□□ 0.45
CLN3-250ENST00000636839 CAMK2AQ9UQM7 478 aa17.85■□□□□ 0.45
CLN3-250ENST00000636839 E9PI62 339 aa17.84■□□□□ 0.45
CLN3-250ENST00000636839 CYTIPO60759 359 aa17.84■□□□□ 0.45
CLN3-250ENST00000636839 ZNF432O94892 652 aa17.84■□□□□ 0.45
CLN3-250ENST00000636839 IGHG3P01860 377 aa17.84■□□□□ 0.45
CLN3-250ENST00000636839 OR2T7P0C7T2 308 aa17.84■□□□□ 0.45
CLN3-250ENST00000636839 EDNRAP25101 427 aa17.84■□□□□ 0.45
CLN3-250ENST00000636839 BCL2A1Q16548 175 aa17.84■□□□□ 0.45
CLN3-250ENST00000636839 SOWAHCQ53LP3 525 aaPredicted RBP17.84■□□□□ 0.45
CLN3-250ENST00000636839 PDSS1Q5T2R2 415 aa17.84■□□□□ 0.45
CLN3-250ENST00000636839 SLC16A9Q7RTY1 509 aa17.84■□□□□ 0.45
CLN3-250ENST00000636839 KLBQ86Z14 1044 aa17.84■□□□□ 0.45
CLN3-250ENST00000636839 KLHL36Q8N4N3 616 aa17.84■□□□□ 0.45
CLN3-250ENST00000636839 OR6N2Q8NGY6 317 aa17.84■□□□□ 0.45
CLN3-250ENST00000636839 OR2T27Q8NH04 317 aa17.84■□□□□ 0.45
CLN3-250ENST00000636839 MCHR2Q969V1 340 aa17.84■□□□□ 0.45
CLN3-250ENST00000636839 C12orf43Q96C57 262 aaKnown RBP17.84■□□□□ 0.45
CLN3-250ENST00000636839 AMELYQ99218 206 aa17.84■□□□□ 0.45
CLN3-250ENST00000636839 ARHGAP9Q9BRR9 750 aa17.84■□□□□ 0.45
CLN3-250ENST00000636839 SIRT4Q9Y6E7 314 aaPredicted RBP17.84■□□□□ 0.45
CLN3-250ENST00000636839 MED19A0JLT2 244 aaPredicted RBP17.84■□□□□ 0.45
CLN3-250ENST00000636839 J3QLW9 94 aa17.84■□□□□ 0.45
CLN3-250ENST00000636839 ZNF593O00488 134 aaPredicted RBP17.84■□□□□ 0.45
CLN3-250ENST00000636839 QDPRP09417 244 aa17.84■□□□□ 0.45
CLN3-250ENST00000636839 ZNF19P17023 458 aa17.84■□□□□ 0.45
CLN3-250ENST00000636839 CRABP1P29762 137 aa17.84■□□□□ 0.45
CLN3-250ENST00000636839 CDAP32320 146 aa17.84■□□□□ 0.45
CLN3-250ENST00000636839 TTKP33981 857 aa17.84■□□□□ 0.45
CLN3-250ENST00000636839 TGFBR1P36897 503 aa17.84■□□□□ 0.45
CLN3-250ENST00000636839 HIST3H3Q16695 136 aa17.84■□□□□ 0.45
CLN3-250ENST00000636839 TP53I3Q53FA7 332 aa17.84■□□□□ 0.45
CLN3-250ENST00000636839 LIPKQ5VXJ0 399 aa17.84■□□□□ 0.45
CLN3-250ENST00000636839 PLEKHG7Q6ZR37 379 aa17.84■□□□□ 0.45
CLN3-250ENST00000636839 TMEM123Q8N131 208 aa17.84■□□□□ 0.45
CLN3-250ENST00000636839 C4orf36Q96KX1 117 aa17.84■□□□□ 0.45
CLN3-250ENST00000636839 RBP7Q96R05 134 aa17.84■□□□□ 0.45
CLN3-250ENST00000636839 INTS14Q96SY0 518 aa17.84■□□□□ 0.45
CLN3-250ENST00000636839 SF3B5Q9BWJ5 86 aaKnown RBP17.84■□□□□ 0.45
CLN3-250ENST00000636839 RACGAP1Q9H0H5 632 aa17.84■□□□□ 0.45
CLN3-250ENST00000636839 H3BMQ9 156 aa17.83■□□□□ 0.45
CLN3-250ENST00000636839 GADD45AP24522 165 aa17.83■□□□□ 0.45
CLN3-250ENST00000636839 PTGS2P35354 604 aa17.83■□□□□ 0.45
CLN3-250ENST00000636839 ZNF837Q96EG3 531 aaPredicted RBP17.83■□□□□ 0.45
CLN3-250ENST00000636839 KCNG2Q9UJ96 466 aa17.83■□□□□ 0.45
CLN3-250ENST00000636839 PHF3Q92576 2039 aaKnown RBP17.83■□□□□ 0.44
CLN3-250ENST00000636839 ATE1O95260 518 aa17.82■□□□□ 0.44
CLN3-250ENST00000636839 TGM6O95932 706 aa17.82■□□□□ 0.44
CLN3-250ENST00000636839 CPN1P15169 458 aa17.82■□□□□ 0.44
CLN3-250ENST00000636839 THEM4Q5T1C6 240 aa17.82■□□□□ 0.44
CLN3-250ENST00000636839 RPTNQ6XPR3 784 aa17.82■□□□□ 0.44
CLN3-250ENST00000636839 ATCAYQ86WG3 371 aa17.82■□□□□ 0.44
CLN3-250ENST00000636839 CDC20BQ86Y33 519 aa17.82■□□□□ 0.44
CLN3-250ENST00000636839 SLC26A10Q8NG04 563 aa17.82■□□□□ 0.44
CLN3-250ENST00000636839 OR51E2Q9H255 320 aa17.82■□□□□ 0.44
CLN3-250ENST00000636839 MARCH7Q9H992 704 aa17.82■□□□□ 0.44
CLN3-250ENST00000636839 CAB39Q9Y376 341 aaPredicted RBP17.82■□□□□ 0.44
CLN3-250ENST00000636839 A0A1B0GTH9 108 aa17.82■□□□□ 0.44
CLN3-250ENST00000636839 KHDRBS3O75525 346 aaKnown RBP17.82■□□□□ 0.44
CLN3-250ENST00000636839 PCSK6P29122 969 aa17.82■□□□□ 0.44
CLN3-250ENST00000636839 RPS3AP61247 264 aaKnown RBP17.82■□□□□ 0.44
CLN3-250ENST00000636839 GLO1Q04760 184 aa17.82■□□□□ 0.44
CLN3-250ENST00000636839 AQP6Q13520 282 aa17.82■□□□□ 0.44
CLN3-250ENST00000636839 CTF1Q16619 201 aa17.82■□□□□ 0.44
CLN3-250ENST00000636839 LINC00303Q3SY05 128 aa17.82■□□□□ 0.44
CLN3-250ENST00000636839 SLC25A47Q6Q0C1 308 aa17.82■□□□□ 0.44
CLN3-250ENST00000636839 UNQ6494/PRO21346Q6UXR6 183 aa17.82■□□□□ 0.44
CLN3-250ENST00000636839 OR5M9Q8NGP3 310 aa17.82■□□□□ 0.44
CLN3-250ENST00000636839 OR52N1Q8NH53 320 aa17.82■□□□□ 0.44
CLN3-250ENST00000636839 RNF128Q8TEB7 428 aa17.82■□□□□ 0.44
CLN3-250ENST00000636839 ADAD1Q96M93 576 aaKnown RBP17.82■□□□□ 0.44
CLN3-250ENST00000636839 RNF167Q9H6Y7 350 aa17.82■□□□□ 0.44
CLN3-250ENST00000636839 GLTPQ9NZD2 209 aa17.82■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms