RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 CSF2RBP32927 897 aa11.52□□□□□ -0.56
LINC00540-203ENST00000631321 RPL27P61353 136 aaKnown RBP11.52□□□□□ -0.56
LINC00540-203ENST00000631321 RBMS2Q15434 407 aaKnown RBP11.52□□□□□ -0.56
LINC00540-203ENST00000631321 C1QL3Q5VWW1 255 aa11.52□□□□□ -0.56
LINC00540-203ENST00000631321 LRRC69Q6ZNQ3 347 aa11.52□□□□□ -0.56
LINC00540-203ENST00000631321 KANSL1Q7Z3B3 1105 aa11.52□□□□□ -0.56
LINC00540-203ENST00000631321 ZNF679Q8IYX0 411 aa11.52□□□□□ -0.56
LINC00540-203ENST00000631321 FAM160A2Q8N612 972 aaPredicted RBP11.52□□□□□ -0.56
LINC00540-203ENST00000631321 MEIOBQ8N635 442 aa11.52□□□□□ -0.56
LINC00540-203ENST00000631321 MSANTD3Q96H12 275 aa11.52□□□□□ -0.56
LINC00540-203ENST00000631321 SZT2Q5T011 3432 aa11.52□□□□□ -0.56
LINC00540-203ENST00000631321 IGLV1-36A0A0B4J1U3 117 aa11.52□□□□□ -0.57
LINC00540-203ENST00000631321 TEX51A0A1B0GUA7 166 aa11.52□□□□□ -0.57
LINC00540-203ENST00000631321 TCRBV16S1A1N1A0A5B0 115 aa11.52□□□□□ -0.57
LINC00540-203ENST00000631321 OR6C65A6NJZ3 312 aa11.52□□□□□ -0.57
LINC00540-203ENST00000631321 PYCARD-AS1I3L0S3 204 aa11.52□□□□□ -0.57
LINC00540-203ENST00000631321 SLC17A2O00624 439 aa11.52□□□□□ -0.57
LINC00540-203ENST00000631321 DXOO77932 396 aaKnown RBP11.52□□□□□ -0.57
LINC00540-203ENST00000631321 IGHMP01871 453 aa11.52□□□□□ -0.57
LINC00540-203ENST00000631321 PDGFAP04085 211 aa11.52□□□□□ -0.57
LINC00540-203ENST00000631321 CD37P11049 281 aa11.52□□□□□ -0.57
LINC00540-203ENST00000631321 PGCP20142 388 aa11.52□□□□□ -0.57
LINC00540-203ENST00000631321 ENPP1P22413 925 aa11.52□□□□□ -0.57
LINC00540-203ENST00000631321 IL12BP29460 328 aa11.52□□□□□ -0.57
LINC00540-203ENST00000631321 EFNB2P52799 333 aa11.52□□□□□ -0.57
LINC00540-203ENST00000631321 PSMA6P60900 246 aaKnown RBP11.52□□□□□ -0.57
LINC00540-203ENST00000631321 ACKR1Q16570 336 aa11.52□□□□□ -0.57
LINC00540-203ENST00000631321 MEP1BQ16820 701 aa11.52□□□□□ -0.57
LINC00540-203ENST00000631321 PCGF3Q3KNV8 242 aa11.52□□□□□ -0.57
LINC00540-203ENST00000631321 SLC18B1Q6NT16 456 aa11.52□□□□□ -0.57
LINC00540-203ENST00000631321 MARCH3Q86UD3 253 aa11.52□□□□□ -0.57
LINC00540-203ENST00000631321 C9orf40Q8IXQ3 194 aa11.52□□□□□ -0.57
LINC00540-203ENST00000631321 OR4C16Q8NGL9 310 aa11.52□□□□□ -0.57
LINC00540-203ENST00000631321 SUN5Q8TC36 379 aa11.52□□□□□ -0.57
LINC00540-203ENST00000631321 ZDHHC12Q96GR4 267 aa11.52□□□□□ -0.57
LINC00540-203ENST00000631321 ULBP3Q9BZM4 244 aa11.52□□□□□ -0.57
LINC00540-203ENST00000631321 CHIAQ9BZP6 476 aa11.52□□□□□ -0.57
LINC00540-203ENST00000631321 ING1Q9UK53 422 aaPredicted RBP11.52□□□□□ -0.57
LINC00540-203ENST00000631321 TMA7Q9Y2S6 64 aaKnown RBP11.52□□□□□ -0.57
LINC00540-203ENST00000631321 MYO9BQ13459 2157 aa11.52□□□□□ -0.57
LINC00540-203ENST00000631321 LOC100289279A0A1B0GTE1 492 aa11.51□□□□□ -0.57
LINC00540-203ENST00000631321 C2CD4DB7Z1M9 353 aa11.51□□□□□ -0.57
LINC00540-203ENST00000631321 VSIG10L2P0DP72 767 aa11.51□□□□□ -0.57
LINC00540-203ENST00000631321 GP1BBP13224 206 aa11.51□□□□□ -0.57
LINC00540-203ENST00000631321 OR1D4P47884 311 aa11.51□□□□□ -0.57
LINC00540-203ENST00000631321 EFNA3P52797 238 aa11.51□□□□□ -0.57
LINC00540-203ENST00000631321 INSM1Q01101 510 aaPredicted RBP11.51□□□□□ -0.57
LINC00540-203ENST00000631321 SSBP1Q04837 148 aaKnown RBP11.51□□□□□ -0.57
LINC00540-203ENST00000631321 OPCMLQ14982 345 aa11.51□□□□□ -0.57
LINC00540-203ENST00000631321 RAB11BQ15907 218 aa11.51□□□□□ -0.57
LINC00540-203ENST00000631321 NKAIN2Q5VXU1 208 aa11.51□□□□□ -0.57
LINC00540-203ENST00000631321 OGFOD3Q6PK18 319 aa11.51□□□□□ -0.57
LINC00540-203ENST00000631321 TTLL10Q6ZVT0 673 aa11.51□□□□□ -0.57
LINC00540-203ENST00000631321 BIVMQ86UB2 503 aa11.51□□□□□ -0.57
LINC00540-203ENST00000631321 OR51D1Q8NGF3 324 aa11.51□□□□□ -0.57
LINC00540-203ENST00000631321 OR6N1Q8NGY5 312 aa11.51□□□□□ -0.57
LINC00540-203ENST00000631321 OR8K3Q8NH51 312 aa11.51□□□□□ -0.57
LINC00540-203ENST00000631321 ZDHHC19Q8WVZ1 309 aaPredicted RBP11.51□□□□□ -0.57
LINC00540-203ENST00000631321 METTL21AQ8WXB1 218 aa11.51□□□□□ -0.57
LINC00540-203ENST00000631321 ATOH1Q92858 354 aaPredicted RBP11.51□□□□□ -0.57
LINC00540-203ENST00000631321 C8orf44Q96CB5 159 aa11.51□□□□□ -0.57
LINC00540-203ENST00000631321 GAL3ST4Q96RP7 486 aa11.51□□□□□ -0.57
LINC00540-203ENST00000631321 DHRS9Q9BPW9 319 aa11.51□□□□□ -0.57
LINC00540-203ENST00000631321 GSX2Q9BZM3 304 aa11.51□□□□□ -0.57
LINC00540-203ENST00000631321 TXNIPQ9H3M7 391 aa11.51□□□□□ -0.57
LINC00540-203ENST00000631321 SLC2A4RGQ9NR83 387 aa11.51□□□□□ -0.57
LINC00540-203ENST00000631321 MRPL22Q9NWU5 206 aaKnown RBP11.51□□□□□ -0.57
LINC00540-203ENST00000631321 MPDZO75970 2070 aa11.51□□□□□ -0.57
LINC00540-203ENST00000631321 KNL1Q8NG31 2342 aa11.51□□□□□ -0.57
LINC00540-203ENST00000631321 IGHV1OR15-9A0A0B4J2B8 117 aa11.51□□□□□ -0.57
LINC00540-203ENST00000631321 ITGA5P08648 1049 aa11.51□□□□□ -0.57
LINC00540-203ENST00000631321 RRASP10301 218 aa11.51□□□□□ -0.57
LINC00540-203ENST00000631321 CXCL2P19875 107 aa11.51□□□□□ -0.57
LINC00540-203ENST00000631321 POU3F4P49335 361 aa11.51□□□□□ -0.57
LINC00540-203ENST00000631321 POLR2HP52434 150 aaKnown RBP11.51□□□□□ -0.57
LINC00540-203ENST00000631321 KCNAB1Q14722 419 aa11.51□□□□□ -0.57
LINC00540-203ENST00000631321 ASPHD2Q6ICH7 369 aa11.51□□□□□ -0.57
LINC00540-203ENST00000631321 CHRDL2Q6WN34 429 aa11.51□□□□□ -0.57
LINC00540-203ENST00000631321 SYT13Q7L8C5 426 aa11.51□□□□□ -0.57
LINC00540-203ENST00000631321 HDDC2Q7Z4H3 204 aa11.51□□□□□ -0.57
LINC00540-203ENST00000631321 COMMD7Q86VX2 200 aa11.51□□□□□ -0.57
LINC00540-203ENST00000631321 TSEN15Q8WW01 171 aaKnown RBP11.51□□□□□ -0.57
LINC00540-203ENST00000631321 FAM3DQ96BQ1 224 aa11.51□□□□□ -0.57
LINC00540-203ENST00000631321 C17orf51A8MQB3 221 aa11.5□□□□□ -0.57
LINC00540-203ENST00000631321 C11orf98E9PRG8 122 aa11.5□□□□□ -0.57
LINC00540-203ENST00000631321 MEN1O00255 615 aa11.5□□□□□ -0.57
LINC00540-203ENST00000631321 WISP1O95388 367 aa11.5□□□□□ -0.57
LINC00540-203ENST00000631321 CD27P26842 260 aa11.5□□□□□ -0.57
LINC00540-203ENST00000631321 MAP2K6P52564 334 aa11.5□□□□□ -0.57
LINC00540-203ENST00000631321 DLX5P56178 289 aa11.5□□□□□ -0.57
LINC00540-203ENST00000631321 FAM198BQ6UWH4 519 aa11.5□□□□□ -0.57
LINC00540-203ENST00000631321 ZNF441Q8N8Z8 693 aa11.5□□□□□ -0.57
LINC00540-203ENST00000631321 NRSN2Q9GZP1 204 aa11.5□□□□□ -0.57
LINC00540-203ENST00000631321 WWTR1Q9GZV5 400 aa11.5□□□□□ -0.57
LINC00540-203ENST00000631321 KIF25Q9UIL4 384 aa11.5□□□□□ -0.57
LINC00540-203ENST00000631321 TMED7-TICAM2A0A0A6YYA0 188 aa11.5□□□□□ -0.57
LINC00540-203ENST00000631321 MCRIP1C9JLW8 97 aa11.5□□□□□ -0.57
LINC00540-203ENST00000631321 SUSD5O60279 629 aa11.5□□□□□ -0.57
LINC00540-203ENST00000631321 SLC25A12O75746 678 aa11.5□□□□□ -0.57
LINC00540-203ENST00000631321 PNPP00491 289 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms