RNA–Protein interactions for RNA: ENST00000627317.1

PNKP-221, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 767 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-221ENST00000627317 OR10A4Q9H209 315 aa12.92□□□□□ -0.34
PNKP-221ENST00000627317 DCLRE1BQ9H816 532 aa12.92□□□□□ -0.34
PNKP-221ENST00000627317 NDRG3Q9UGV2 375 aa12.92□□□□□ -0.34
PNKP-221ENST00000627317 PRSS37A4D1T9 235 aa12.91□□□□□ -0.34
PNKP-221ENST00000627317 SH3D21A4FU49 640 aa12.91□□□□□ -0.34
PNKP-221ENST00000627317 EI24O14681 340 aa12.91□□□□□ -0.34
PNKP-221ENST00000627317 DHHO43323 396 aa12.91□□□□□ -0.34
PNKP-221ENST00000627317 AHCYL1O43865 530 aa12.91□□□□□ -0.34
PNKP-221ENST00000627317 MITFO75030 526 aaPredicted RBP12.91□□□□□ -0.34
PNKP-221ENST00000627317 SLC2A10O95528 541 aa12.91□□□□□ -0.34
PNKP-221ENST00000627317 RENP00797 406 aa12.91□□□□□ -0.34
PNKP-221ENST00000627317 IFNGP01579 166 aa12.91□□□□□ -0.34
PNKP-221ENST00000627317 PPP3CBP16298 524 aa12.91□□□□□ -0.34
PNKP-221ENST00000627317 HIST1H1CP16403 213 aaKnown RBP12.91□□□□□ -0.34
PNKP-221ENST00000627317 ARF1P84077 181 aaKnown RBP12.91□□□□□ -0.34
PNKP-221ENST00000627317 PPP2R2BQ00005 443 aa12.91□□□□□ -0.34
PNKP-221ENST00000627317 FMODQ06828 376 aa12.91□□□□□ -0.34
PNKP-221ENST00000627317 DAG1Q14118 895 aa12.91□□□□□ -0.34
PNKP-221ENST00000627317 TRIP10Q15642 601 aa12.91□□□□□ -0.34
PNKP-221ENST00000627317 HIST3H3Q16695 136 aa12.91□□□□□ -0.34
PNKP-221ENST00000627317 THEM4Q5T1C6 240 aa12.91□□□□□ -0.34
PNKP-221ENST00000627317 SLC35F1Q5T1Q4 408 aa12.91□□□□□ -0.34
PNKP-221ENST00000627317 SLC27A4Q6P1M0 643 aa12.91□□□□□ -0.34
PNKP-221ENST00000627317 LEG1Q6P5S2 330 aa12.91□□□□□ -0.34
PNKP-221ENST00000627317 KLHL24Q6TFL4 600 aa12.91□□□□□ -0.34
PNKP-221ENST00000627317 LNX2Q8N448 690 aa12.91□□□□□ -0.34
PNKP-221ENST00000627317 CBR4Q8N4T8 237 aa12.91□□□□□ -0.34
PNKP-221ENST00000627317 OR1K1Q8NGR3 316 aa12.91□□□□□ -0.34
PNKP-221ENST00000627317 OR4Q3Q8NH05 313 aa12.91□□□□□ -0.34
PNKP-221ENST00000627317 OR4K13Q8NH42 304 aa12.91□□□□□ -0.34
PNKP-221ENST00000627317 MCHR2Q969V1 340 aa12.91□□□□□ -0.34
PNKP-221ENST00000627317 ZNF837Q96EG3 531 aaPredicted RBP12.91□□□□□ -0.34
PNKP-221ENST00000627317 USB1Q9BQ65 265 aaKnown RBP12.91□□□□□ -0.34
PNKP-221ENST00000627317 TEX12Q9BXU0 123 aa12.91□□□□□ -0.34
PNKP-221ENST00000627317 CLEC4MQ9H2X3 399 aaPredicted RBP12.91□□□□□ -0.34
PNKP-221ENST00000627317 MAP1AP78559 2803 aaPredicted RBP12.9□□□□□ -0.34
PNKP-221ENST00000627317 A0A1W2PPR1 153 aa12.9□□□□□ -0.34
PNKP-221ENST00000627317 SLC22A23A1A5C7 686 aa12.9□□□□□ -0.34
PNKP-221ENST00000627317 OR5H1A6NKK0 313 aa12.9□□□□□ -0.34
PNKP-221ENST00000627317 RIIAD1A6NNX1 92 aa12.9□□□□□ -0.34
PNKP-221ENST00000627317 ZNF99A8MXY4 864 aaPredicted RBP12.9□□□□□ -0.34
PNKP-221ENST00000627317 SIAH2O43255 324 aa12.9□□□□□ -0.34
PNKP-221ENST00000627317 SEC14L2O76054 403 aa12.9□□□□□ -0.34
PNKP-221ENST00000627317 GOSR1O95249 250 aa12.9□□□□□ -0.34
PNKP-221ENST00000627317 GRK5P34947 590 aa12.9□□□□□ -0.34
PNKP-221ENST00000627317 ALDH3A2P51648 485 aa12.9□□□□□ -0.34
PNKP-221ENST00000627317 CRISP1P54107 249 aa12.9□□□□□ -0.34
PNKP-221ENST00000627317 ESRRGP62508 458 aa12.9□□□□□ -0.34
PNKP-221ENST00000627317 KHDRBS1Q07666 443 aaKnown RBP eCLIP12.9□□□□□ -0.34
PNKP-221ENST00000627317 GINS1Q14691 196 aa12.9□□□□□ -0.34
PNKP-221ENST00000627317 GABRA6Q16445 453 aa12.9□□□□□ -0.34
PNKP-221ENST00000627317 ANKRD16Q6P6B7 361 aa12.9□□□□□ -0.34
PNKP-221ENST00000627317 LRFN4Q6PJG9 635 aa12.9□□□□□ -0.34
PNKP-221ENST00000627317 ZNF813Q6ZN06 617 aa12.9□□□□□ -0.34
PNKP-221ENST00000627317 ZBTB49Q6ZSB9 765 aa12.9□□□□□ -0.34
PNKP-221ENST00000627317 PTCHD4Q6ZW05 846 aa12.9□□□□□ -0.34
PNKP-221ENST00000627317 C17orf78Q8N4C9 275 aa12.9□□□□□ -0.34
PNKP-221ENST00000627317 SDR9C7Q8NEX9 313 aa12.9□□□□□ -0.34
PNKP-221ENST00000627317 OR52E2Q8NGJ4 325 aa12.9□□□□□ -0.34
PNKP-221ENST00000627317 NSMAFQ92636 917 aa12.9□□□□□ -0.34
PNKP-221ENST00000627317 NMD3Q96D46 503 aaKnown RBP12.9□□□□□ -0.34
PNKP-221ENST00000627317 ZC3HAV1LQ96H79 300 aaKnown RBP12.9□□□□□ -0.34
PNKP-221ENST00000627317 FOXB1Q99853 325 aa12.9□□□□□ -0.34
PNKP-221ENST00000627317 SYT4Q9H2B2 425 aa12.9□□□□□ -0.34
PNKP-221ENST00000627317 RIBC2Q9H4K1 309 aa12.9□□□□□ -0.34
PNKP-221ENST00000627317 RERGLQ9H628 205 aa12.9□□□□□ -0.34
PNKP-221ENST00000627317 USE1Q9NZ43 259 aa12.9□□□□□ -0.34
PNKP-221ENST00000627317 VSX1Q9NZR4 365 aaPredicted RBP12.9□□□□□ -0.34
PNKP-221ENST00000627317 TMEFF2Q9UIK5 374 aaPredicted RBP12.9□□□□□ -0.34
PNKP-221ENST00000627317 KLHL21Q9UJP4 597 aa12.9□□□□□ -0.34
PNKP-221ENST00000627317 A0A096LPE4 126 aa12.89□□□□□ -0.35
PNKP-221ENST00000627317 A0A1W2PPZ6 126 aa12.89□□□□□ -0.35
PNKP-221ENST00000627317 HRGP04196 525 aa12.89□□□□□ -0.35
PNKP-221ENST00000627317 ALPLP05186 524 aa12.89□□□□□ -0.35
PNKP-221ENST00000627317 B4GALT1P15291 398 aa12.89□□□□□ -0.35
PNKP-221ENST00000627317 ZNF3P17036 446 aa12.89□□□□□ -0.35
PNKP-221ENST00000627317 CDKN2AP42771 156 aaKnown RBP12.89□□□□□ -0.35
PNKP-221ENST00000627317 ZNF133P52736 654 aaPredicted RBP12.89□□□□□ -0.35
PNKP-221ENST00000627317 RAD23AP54725 363 aa12.89□□□□□ -0.35
PNKP-221ENST00000627317 UBE2NP61088 152 aaKnown RBP12.89□□□□□ -0.35
PNKP-221ENST00000627317 HIKESHIQ53FT3 197 aa12.89□□□□□ -0.35
PNKP-221ENST00000627317 TIMM23BQ5SRD1 257 aa12.89□□□□□ -0.35
PNKP-221ENST00000627317 C10orf128Q5T292 105 aa12.89□□□□□ -0.35
PNKP-221ENST00000627317 ALKBH2Q6NS38 261 aa12.89□□□□□ -0.35
PNKP-221ENST00000627317 DNM1P34Q6PK57 102 aa12.89□□□□□ -0.35
PNKP-221ENST00000627317 C22orf34Q6ZV56 151 aa12.89□□□□□ -0.35
PNKP-221ENST00000627317 P2RY8Q86VZ1 359 aa12.89□□□□□ -0.35
PNKP-221ENST00000627317 CDC20BQ86Y33 519 aa12.89□□□□□ -0.35
PNKP-221ENST00000627317 MUCL1Q96DR8 90 aa12.89□□□□□ -0.35
PNKP-221ENST00000627317 MUS81Q96NY9 551 aa12.89□□□□□ -0.35
PNKP-221ENST00000627317 WFIKKN1Q96NZ8 548 aa12.89□□□□□ -0.35
PNKP-221ENST00000627317 SNX18Q96RF0 628 aa12.89□□□□□ -0.35
PNKP-221ENST00000627317 NMNAT3Q96T66 252 aa12.89□□□□□ -0.35
PNKP-221ENST00000627317 PRRG3Q9BZD7 231 aa12.89□□□□□ -0.35
PNKP-221ENST00000627317 LIME1Q9H400 295 aa12.89□□□□□ -0.35
PNKP-221ENST00000627317 SLC25A19Q9HC21 320 aa12.89□□□□□ -0.35
PNKP-221ENST00000627317 F8P00451 2351 aa12.88□□□□□ -0.35
PNKP-221ENST00000627317 A0A1W2PPL8 197 aa12.88□□□□□ -0.35
PNKP-221ENST00000627317 DEFB108AA8MXU0 73 aa12.88□□□□□ -0.35
PNKP-221ENST00000627317 CASKO14936 926 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms