RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 FCER2P06734 321 aa9.56□□□□□ -0.88
CUX1-221ENST00000622516 SLC26A5P58743 744 aa9.56□□□□□ -0.88
CUX1-221ENST00000622516 EMC4Q5J8M3 183 aa9.56□□□□□ -0.88
CUX1-221ENST00000622516 GPR139Q6DWJ6 353 aa9.56□□□□□ -0.88
CUX1-221ENST00000622516 CORO6Q6QEF8 472 aa9.56□□□□□ -0.88
CUX1-221ENST00000622516 OR2G2Q8NGZ5 317 aa9.56□□□□□ -0.88
CUX1-221ENST00000622516 SLC7A6Q92536 515 aa9.56□□□□□ -0.88
CUX1-221ENST00000622516 TMEM106AQ96A25 262 aa9.56□□□□□ -0.88
CUX1-221ENST00000622516 KLHL15Q96M94 604 aa9.56□□□□□ -0.88
CUX1-221ENST00000622516 BEX1Q9HBH7 125 aa9.56□□□□□ -0.88
CUX1-221ENST00000622516 TCF7L1Q9HCS4 588 aa9.56□□□□□ -0.88
CUX1-221ENST00000622516 PLSCR3Q9NRY6 295 aa9.56□□□□□ -0.88
CUX1-221ENST00000622516 LAMA5O15230 3695 aa9.56□□□□□ -0.88
CUX1-221ENST00000622516 CPAMD8Q8IZJ3 1885 aa9.55□□□□□ -0.88
CUX1-221ENST00000622516 TRABD2BA6NFA1 517 aa9.55□□□□□ -0.88
CUX1-221ENST00000622516 A6NL46 340 aa9.55□□□□□ -0.88
CUX1-221ENST00000622516 IFITM5A6NNB3 132 aa9.55□□□□□ -0.88
CUX1-221ENST00000622516 MS4A18H0YCH9 400 aa9.55□□□□□ -0.88
CUX1-221ENST00000622516 TOX3O15405 576 aaPredicted RBP9.55□□□□□ -0.88
CUX1-221ENST00000622516 DXOO77932 396 aaKnown RBP9.55□□□□□ -0.88
CUX1-221ENST00000622516 IGF2P01344 180 aa9.55□□□□□ -0.88
CUX1-221ENST00000622516 ANKRD34CP0C6C1 535 aa9.55□□□□□ -0.88
CUX1-221ENST00000622516 CCR6P51684 374 aa9.55□□□□□ -0.88
CUX1-221ENST00000622516 POU3F1Q03052 451 aaPredicted RBP9.55□□□□□ -0.88
CUX1-221ENST00000622516 C17orf67Q0P5P2 114 aa9.55□□□□□ -0.88
CUX1-221ENST00000622516 BTBD16Q32M84 506 aa9.55□□□□□ -0.88
CUX1-221ENST00000622516 MS4A18Q3C1V0 323 aa9.55□□□□□ -0.88
CUX1-221ENST00000622516 SLC36A2Q495M3 483 aa9.55□□□□□ -0.88
CUX1-221ENST00000622516 ZFP69Q49AA0 526 aa9.55□□□□□ -0.88
CUX1-221ENST00000622516 YIF1BQ5BJH7 314 aa9.55□□□□□ -0.88
CUX1-221ENST00000622516 ZNF385CQ66K41 422 aaPredicted RBP9.55□□□□□ -0.88
CUX1-221ENST00000622516 UNQ9370/PRO34162Q6UXP9 181 aa9.55□□□□□ -0.88
CUX1-221ENST00000622516 STAC2Q6ZMT1 411 aa9.55□□□□□ -0.88
CUX1-221ENST00000622516 UBALD2Q8IYN6 164 aa9.55□□□□□ -0.88
CUX1-221ENST00000622516 OTOSQ8NHW6 89 aa9.55□□□□□ -0.88
CUX1-221ENST00000622516 ZNF486Q96H40 463 aaPredicted RBP9.55□□□□□ -0.88
CUX1-221ENST00000622516 NECAB3Q96P71 396 aaPredicted RBP9.55□□□□□ -0.88
CUX1-221ENST00000622516 TXNIPQ9H3M7 391 aa9.55□□□□□ -0.88
CUX1-221ENST00000622516 KCNK15Q9H427 330 aa9.55□□□□□ -0.88
CUX1-221ENST00000622516 C12orf10Q9HB07 376 aa9.55□□□□□ -0.88
CUX1-221ENST00000622516 MYOTQ9UBF9 498 aa9.55□□□□□ -0.88
CUX1-221ENST00000622516 FBXL2Q9UKC9 423 aa9.55□□□□□ -0.88
CUX1-221ENST00000622516 CFAP47Q6ZTR5 3102 aa9.55□□□□□ -0.88
CUX1-221ENST00000622516 SLC22A23A1A5C7 686 aa9.55□□□□□ -0.88
CUX1-221ENST00000622516 HMX3A6NHT5 357 aa9.55□□□□□ -0.88
CUX1-221ENST00000622516 G3V3Y1 287 aa9.55□□□□□ -0.88
CUX1-221ENST00000622516 GPRIN2O60269 458 aa9.55□□□□□ -0.88
CUX1-221ENST00000622516 TMIGD3P0DMS9 266 aaPredicted RBP9.55□□□□□ -0.88
CUX1-221ENST00000622516 HSF2Q03933 536 aa9.55□□□□□ -0.88
CUX1-221ENST00000622516 RIN1Q13671 783 aa9.55□□□□□ -0.88
CUX1-221ENST00000622516 Q499Y3 187 aa9.55□□□□□ -0.88
CUX1-221ENST00000622516 TRIM61Q5EBN2 209 aa9.55□□□□□ -0.88
CUX1-221ENST00000622516 WDR38Q5JTN6 314 aa9.55□□□□□ -0.88
CUX1-221ENST00000622516 SIAH3Q8IW03 269 aa9.55□□□□□ -0.88
CUX1-221ENST00000622516 ZNF519Q8TB69 540 aa9.55□□□□□ -0.88
CUX1-221ENST00000622516 MRPL48Q96GC5 212 aaKnown RBP9.55□□□□□ -0.88
CUX1-221ENST00000622516 METTL7AQ9H8H3 244 aa9.55□□□□□ -0.88
CUX1-221ENST00000622516 COL5A1P20908 1838 aaPredicted RBP9.55□□□□□ -0.88
CUX1-221ENST00000622516 A0A1W2PNR3 127 aa9.54□□□□□ -0.88
CUX1-221ENST00000622516 OR4C45A6NMZ5 311 aa9.54□□□□□ -0.88
CUX1-221ENST00000622516 FTCDNL1E5RQL4 147 aa9.54□□□□□ -0.88
CUX1-221ENST00000622516 INMT-MINDY4F8WBC2 141 aa9.54□□□□□ -0.88
CUX1-221ENST00000622516 CDK2AP1O14519 115 aa9.54□□□□□ -0.88
CUX1-221ENST00000622516 EIF1AYO14602 144 aaKnown RBP9.54□□□□□ -0.88
CUX1-221ENST00000622516 LAMTOR5O43504 91 aa9.54□□□□□ -0.88
CUX1-221ENST00000622516 MT-ATP6P00846 226 aa9.54□□□□□ -0.88
CUX1-221ENST00000622516 MT-ND4P03905 459 aa9.54□□□□□ -0.88
CUX1-221ENST00000622516 CCKBRP32239 447 aa9.54□□□□□ -0.88
CUX1-221ENST00000622516 KIR3DL2P43630 455 aa9.54□□□□□ -0.88
CUX1-221ENST00000622516 CAPZA2P47755 286 aa9.54□□□□□ -0.88
CUX1-221ENST00000622516 EIF1AXP47813 144 aaKnown RBP9.54□□□□□ -0.88
CUX1-221ENST00000622516 MRPS15P82914 257 aaKnown RBP9.54□□□□□ -0.88
CUX1-221ENST00000622516 IFITM2Q01629 132 aa9.54□□□□□ -0.88
CUX1-221ENST00000622516 PUDPQ08623 228 aa9.54□□□□□ -0.88
CUX1-221ENST00000622516 NTRK2Q16620 822 aa9.54□□□□□ -0.88
CUX1-221ENST00000622516 BCL2L15Q5TBC7 163 aa9.54□□□□□ -0.88
CUX1-221ENST00000622516 TCEAL6Q6IPX3 200 aa9.54□□□□□ -0.88
CUX1-221ENST00000622516 PYHIN1Q6K0P9 492 aa9.54□□□□□ -0.88
CUX1-221ENST00000622516 LINGO2Q7L985 606 aa9.54□□□□□ -0.88
CUX1-221ENST00000622516 TMPRSS12Q86WS5 348 aa9.54□□□□□ -0.88
CUX1-221ENST00000622516 MAML2Q8IZL2 1156 aaPredicted RBP9.54□□□□□ -0.88
CUX1-221ENST00000622516 TOMM5Q8N4H5 51 aa9.54□□□□□ -0.88
CUX1-221ENST00000622516 HGDQ93099 445 aa9.54□□□□□ -0.88
CUX1-221ENST00000622516 TCEAL3Q969E4 200 aa9.54□□□□□ -0.88
CUX1-221ENST00000622516 YIPF5Q969M3 257 aa9.54□□□□□ -0.88
CUX1-221ENST00000622516 C5orf34Q96MH7 638 aa9.54□□□□□ -0.88
CUX1-221ENST00000622516 GAL3ST1Q99999 423 aa9.54□□□□□ -0.88
CUX1-221ENST00000622516 NUDT15Q9NV35 164 aa9.54□□□□□ -0.88
CUX1-221ENST00000622516 PPP4R1LQ9P1A2 415 aa9.54□□□□□ -0.88
CUX1-221ENST00000622516 FBXL3Q9UKT7 428 aa9.54□□□□□ -0.88
CUX1-221ENST00000622516 SPATA2Q9UM82 520 aa9.54□□□□□ -0.88
CUX1-221ENST00000622516 V9GY05 133 aa9.54□□□□□ -0.88
CUX1-221ENST00000622516 SYPP08247 313 aa9.54□□□□□ -0.88
CUX1-221ENST00000622516 KLK2P20151 261 aa9.54□□□□□ -0.88
CUX1-221ENST00000622516 GIFP27352 417 aa9.54□□□□□ -0.88
CUX1-221ENST00000622516 BTCP35070 178 aa9.54□□□□□ -0.88
CUX1-221ENST00000622516 TLE3Q04726 772 aa9.54□□□□□ -0.88
CUX1-221ENST00000622516 MFGE8Q08431 387 aaPredicted RBP9.54□□□□□ -0.88
CUX1-221ENST00000622516 SIGIRRQ6IA17 410 aa9.54□□□□□ -0.88
CUX1-221ENST00000622516 GPAT4Q86UL3 456 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 171.3 ms