RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 SLX4IPQ5VYV7 408 aa17.32■□□□□ 0.36
UPF3A-211ENST00000618700 TMEM236Q5W0B7 351 aa17.32■□□□□ 0.36
UPF3A-211ENST00000618700 LEG1Q6P5S2 330 aa17.32■□□□□ 0.36
UPF3A-211ENST00000618700 JAZF1Q86VZ6 243 aa17.32■□□□□ 0.36
UPF3A-211ENST00000618700 ACBD4Q8NC06 268 aa17.32■□□□□ 0.36
UPF3A-211ENST00000618700 C1orf162Q8NEQ5 155 aaPredicted RBP17.32■□□□□ 0.36
UPF3A-211ENST00000618700 SDR9C7Q8NEX9 313 aa17.32■□□□□ 0.36
UPF3A-211ENST00000618700 OR52E2Q8NGJ4 325 aa17.32■□□□□ 0.36
UPF3A-211ENST00000618700 KISS1RQ969F8 398 aaPredicted RBP17.32■□□□□ 0.36
UPF3A-211ENST00000618700 NMNAT3Q96T66 252 aa17.32■□□□□ 0.36
UPF3A-211ENST00000618700 OR10A4Q9H209 315 aa17.32■□□□□ 0.36
UPF3A-211ENST00000618700 SYT4Q9H2B2 425 aa17.32■□□□□ 0.36
UPF3A-211ENST00000618700 RIBC2Q9H4K1 309 aa17.32■□□□□ 0.36
UPF3A-211ENST00000618700 DOPEY2Q9Y3R5 2298 aa17.31■□□□□ 0.36
UPF3A-211ENST00000618700 ZNF99A8MXY4 864 aaPredicted RBP17.31■□□□□ 0.36
UPF3A-211ENST00000618700 C19orf84I3L1E1 186 aa17.31■□□□□ 0.36
UPF3A-211ENST00000618700 DLGAP1O14490 977 aa17.31■□□□□ 0.36
UPF3A-211ENST00000618700 TSC22D1Q15714 1073 aa17.31■□□□□ 0.36
UPF3A-211ENST00000618700 GABRA6Q16445 453 aa17.31■□□□□ 0.36
UPF3A-211ENST00000618700 ZNF627Q7L945 461 aa17.31■□□□□ 0.36
UPF3A-211ENST00000618700 BHLHA15Q7RTS1 189 aaPredicted RBP17.31■□□□□ 0.36
UPF3A-211ENST00000618700 SLC37A3Q8NCC5 494 aa17.31■□□□□ 0.36
UPF3A-211ENST00000618700 RDH12Q96NR8 316 aa17.31■□□□□ 0.36
UPF3A-211ENST00000618700 RBP7Q96R05 134 aa17.31■□□□□ 0.36
UPF3A-211ENST00000618700 HDHD5Q9BXW7 423 aa17.31■□□□□ 0.36
UPF3A-211ENST00000618700 NELFAQ9H3P2 528 aa17.31■□□□□ 0.36
UPF3A-211ENST00000618700 TOR3AQ9H497 397 aa17.31■□□□□ 0.36
UPF3A-211ENST00000618700 KLHL21Q9UJP4 597 aa17.31■□□□□ 0.36
UPF3A-211ENST00000618700 UGT2A1Q9Y4X1 527 aa17.31■□□□□ 0.36
UPF3A-211ENST00000618700 ANKHD1Q8IWZ3 2542 aaKnown RBP17.31■□□□□ 0.36
UPF3A-211ENST00000618700 ASH1LQ9NR48 2969 aaKnown RBP17.31■□□□□ 0.36
UPF3A-211ENST00000618700 OR6C68A6NDL8 312 aa17.3■□□□□ 0.36
UPF3A-211ENST00000618700 SURF4O15260 269 aa17.3■□□□□ 0.36
UPF3A-211ENST00000618700 RENP00797 406 aa17.3■□□□□ 0.36
UPF3A-211ENST00000618700 HMGN1P05114 100 aa17.3■□□□□ 0.36
UPF3A-211ENST00000618700 CTLA4P16410 223 aa17.3■□□□□ 0.36
UPF3A-211ENST00000618700 IL32P24001 234 aa17.3■□□□□ 0.36
UPF3A-211ENST00000618700 ARF1P84077 181 aaKnown RBP17.3■□□□□ 0.36
UPF3A-211ENST00000618700 TGFBR3Q03167 851 aa17.3■□□□□ 0.36
UPF3A-211ENST00000618700 CRMP1Q14194 572 aa17.3■□□□□ 0.36
UPF3A-211ENST00000618700 C12orf73Q69YU5 71 aa17.3■□□□□ 0.36
UPF3A-211ENST00000618700 STEAP2Q8NFT2 490 aa17.3■□□□□ 0.36
UPF3A-211ENST00000618700 OR1K1Q8NGR3 316 aa17.3■□□□□ 0.36
UPF3A-211ENST00000618700 NRG4Q8WWG1 115 aa17.3■□□□□ 0.36
UPF3A-211ENST00000618700 MUS81Q96NY9 551 aa17.3■□□□□ 0.36
UPF3A-211ENST00000618700 PSMG3-AS1Q96PY0 264 aa17.3■□□□□ 0.36
UPF3A-211ENST00000618700 FOXB1Q99853 325 aa17.3■□□□□ 0.36
UPF3A-211ENST00000618700 GRIP2Q9C0E4 1043 aa17.3■□□□□ 0.36
UPF3A-211ENST00000618700 UTP20O75691 2785 aaKnown RBP17.29■□□□□ 0.36
UPF3A-211ENST00000618700 SETXQ7Z333 2677 aaKnown RBP17.29■□□□□ 0.36
UPF3A-211ENST00000618700 RIIAD1A6NNX1 92 aa17.29■□□□□ 0.36
UPF3A-211ENST00000618700 DCTN6O00399 190 aa17.29■□□□□ 0.36
UPF3A-211ENST00000618700 RAD51DO75771 328 aa17.29■□□□□ 0.36
UPF3A-211ENST00000618700 SNAP29O95721 258 aa17.29■□□□□ 0.36
UPF3A-211ENST00000618700 IFNGP01579 166 aa17.29■□□□□ 0.36
UPF3A-211ENST00000618700 ZIK1Q3SY52 487 aaPredicted RBP17.29■□□□□ 0.36
UPF3A-211ENST00000618700 FOXL2NBQ6ZUU3 175 aa17.29■□□□□ 0.36
UPF3A-211ENST00000618700 GALNT4Q8N4A0 578 aa17.29■□□□□ 0.36
UPF3A-211ENST00000618700 C17orf78Q8N4C9 275 aa17.29■□□□□ 0.36
UPF3A-211ENST00000618700 CYB561A3Q8NBI2 242 aa17.29■□□□□ 0.36
UPF3A-211ENST00000618700 BCL2L2Q92843 193 aaPredicted RBP17.29■□□□□ 0.36
UPF3A-211ENST00000618700 PITX2Q99697 317 aa17.29■□□□□ 0.36
UPF3A-211ENST00000618700 NMNAT2Q9BZQ4 307 aa17.29■□□□□ 0.36
UPF3A-211ENST00000618700 ACTR6Q9GZN1 396 aa17.29■□□□□ 0.36
UPF3A-211ENST00000618700 NUAK2Q9H093 628 aa17.29■□□□□ 0.36
UPF3A-211ENST00000618700 SMPD3Q9NY59 655 aaPredicted RBP17.29■□□□□ 0.36
UPF3A-211ENST00000618700 PTPN13Q12923 2485 aa17.29■□□□□ 0.36
UPF3A-211ENST00000618700 IGLV1-36A0A0B4J1U3 117 aa17.28■□□□□ 0.36
UPF3A-211ENST00000618700 CIB4A0PJX0 185 aa17.28■□□□□ 0.36
UPF3A-211ENST00000618700 A1L4Q6 167 aa17.28■□□□□ 0.36
UPF3A-211ENST00000618700 OR5H1A6NKK0 313 aa17.28■□□□□ 0.36
UPF3A-211ENST00000618700 PRSS44E7EML9 344 aa17.28■□□□□ 0.36
UPF3A-211ENST00000618700 ZNF3P17036 446 aa17.28■□□□□ 0.36
UPF3A-211ENST00000618700 ZNF84P51523 738 aa17.28■□□□□ 0.36
UPF3A-211ENST00000618700 NRN1LQ496H8 165 aa17.28■□□□□ 0.36
UPF3A-211ENST00000618700 OR7E24Q6IFN5 339 aa17.28■□□□□ 0.36
UPF3A-211ENST00000618700 ANKRD16Q6P6B7 361 aa17.28■□□□□ 0.36
UPF3A-211ENST00000618700 ZBTB46Q86UZ6 589 aa17.28■□□□□ 0.36
UPF3A-211ENST00000618700 NSMAFQ92636 917 aa17.28■□□□□ 0.36
UPF3A-211ENST00000618700 S100PBPQ96BU1 408 aa17.28■□□□□ 0.36
UPF3A-211ENST00000618700 HRASLS5Q96KN8 279 aa17.28■□□□□ 0.36
UPF3A-211ENST00000618700 TSSK2Q96PF2 358 aa17.28■□□□□ 0.36
UPF3A-211ENST00000618700 SLC38A2Q96QD8 506 aa17.28■□□□□ 0.36
UPF3A-211ENST00000618700 USB1Q9BQ65 265 aaKnown RBP17.28■□□□□ 0.36
UPF3A-211ENST00000618700 TEX12Q9BXU0 123 aa17.28■□□□□ 0.36
UPF3A-211ENST00000618700 PRRG3Q9BZD7 231 aa17.28■□□□□ 0.36
UPF3A-211ENST00000618700 RACGAP1Q9H0H5 632 aa17.28■□□□□ 0.36
UPF3A-211ENST00000618700 FN3KQ9H479 309 aa17.28■□□□□ 0.36
UPF3A-211ENST00000618700 RPRD1BQ9NQG5 326 aaKnown RBP17.28■□□□□ 0.36
UPF3A-211ENST00000618700 TMEM38BQ9NVV0 291 aa17.28■□□□□ 0.36
UPF3A-211ENST00000618700 FKBP7Q9Y680 259 aa17.28■□□□□ 0.36
UPF3A-211ENST00000618700 SLC16A7O60669 478 aa17.27■□□□□ 0.36
UPF3A-211ENST00000618700 SEC14L2O76054 403 aa17.27■□□□□ 0.36
UPF3A-211ENST00000618700 B4GALT1P15291 398 aa17.27■□□□□ 0.36
UPF3A-211ENST00000618700 CRABP1P29762 137 aa17.27■□□□□ 0.36
UPF3A-211ENST00000618700 PEX19P40855 299 aa17.27■□□□□ 0.36
UPF3A-211ENST00000618700 SLC25A1P53007 311 aa17.27■□□□□ 0.36
UPF3A-211ENST00000618700 EFNB1P98172 346 aa17.27■□□□□ 0.36
UPF3A-211ENST00000618700 ETFDHQ16134 617 aa17.27■□□□□ 0.36
UPF3A-211ENST00000618700 DNM1P34Q6PK57 102 aa17.27■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms