RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 OR6C68A6NDL8 312 aa13.14□□□□□ -0.31
SHROOM1-208ENST00000617339 H3BML4 177 aa13.14□□□□□ -0.31
SHROOM1-208ENST00000617339 UTS2O95399 124 aa13.14□□□□□ -0.31
SHROOM1-208ENST00000617339 NSA2O95478 260 aaKnown RBP13.14□□□□□ -0.31
SHROOM1-208ENST00000617339 ATF1P18846 271 aa13.14□□□□□ -0.31
SHROOM1-208ENST00000617339 RAB3BP20337 219 aa13.14□□□□□ -0.31
SHROOM1-208ENST00000617339 HSD11B2P80365 405 aa13.14□□□□□ -0.31
SHROOM1-208ENST00000617339 DMRTC1Q5HYR2 192 aa13.14□□□□□ -0.31
SHROOM1-208ENST00000617339 HES5Q5TA89 166 aa13.14□□□□□ -0.31
SHROOM1-208ENST00000617339 ZNF595Q8IYB9 648 aa13.14□□□□□ -0.31
SHROOM1-208ENST00000617339 SLC2A12Q8TD20 617 aa13.14□□□□□ -0.31
SHROOM1-208ENST00000617339 KLK11Q9UBX7 282 aa13.14□□□□□ -0.31
SHROOM1-208ENST00000617339 ZNF223Q9UK11 482 aaPredicted RBP13.14□□□□□ -0.31
SHROOM1-208ENST00000617339 SLC35A3Q9Y2D2 325 aa13.14□□□□□ -0.31
SHROOM1-208ENST00000617339 POLEQ07864 2286 aa13.13□□□□□ -0.31
SHROOM1-208ENST00000617339 TRBV2A0A0J9YWF9 115 aa13.13□□□□□ -0.31
SHROOM1-208ENST00000617339 TMEM72A0PK05 275 aa13.13□□□□□ -0.31
SHROOM1-208ENST00000617339 DNASE2O00115 360 aaPredicted RBP13.13□□□□□ -0.31
SHROOM1-208ENST00000617339 SUSD5O60279 629 aa13.13□□□□□ -0.31
SHROOM1-208ENST00000617339 IFNGP01579 166 aa13.13□□□□□ -0.31
SHROOM1-208ENST00000617339 RLN1P04808 185 aa13.13□□□□□ -0.31
SHROOM1-208ENST00000617339 OR8G3PP0DMU2 310 aa13.13□□□□□ -0.31
SHROOM1-208ENST00000617339 CXCR1P25024 350 aa13.13□□□□□ -0.31
SHROOM1-208ENST00000617339 SLC6A19Q695T7 634 aa13.13□□□□□ -0.31
SHROOM1-208ENST00000617339 C11orf88Q6PI97 169 aa13.13□□□□□ -0.31
SHROOM1-208ENST00000617339 OVCH2Q7RTZ1 564 aa13.13□□□□□ -0.31
SHROOM1-208ENST00000617339 TMPRSS9Q7Z410 1059 aa13.13□□□□□ -0.31
SHROOM1-208ENST00000617339 OR11G2Q8NGC1 345 aa13.13□□□□□ -0.31
SHROOM1-208ENST00000617339 ABHD4Q8TB40 342 aa13.13□□□□□ -0.31
SHROOM1-208ENST00000617339 C2CD4CQ8TF44 421 aa13.13□□□□□ -0.31
SHROOM1-208ENST00000617339 WNT2BQ93097 391 aa13.13□□□□□ -0.31
SHROOM1-208ENST00000617339 OR14A2Q96R54 314 aa13.13□□□□□ -0.31
SHROOM1-208ENST00000617339 ANKRD10Q9NXR5 420 aa13.13□□□□□ -0.31
SHROOM1-208ENST00000617339 WNT16Q9UBV4 365 aa13.13□□□□□ -0.31
SHROOM1-208ENST00000617339 SUSD2Q9UGT4 822 aa13.13□□□□□ -0.31
SHROOM1-208ENST00000617339 IGHV1OR21-1A0A087WYE8 117 aa13.13□□□□□ -0.31
SHROOM1-208ENST00000617339 MCRIP1C9JLW8 97 aa13.13□□□□□ -0.31
SHROOM1-208ENST00000617339 EIF1AXP47813 144 aaKnown RBP13.13□□□□□ -0.31
SHROOM1-208ENST00000617339 EFNA3P52797 238 aa13.13□□□□□ -0.31
SHROOM1-208ENST00000617339 HLA-BQ31612 363 aa13.13□□□□□ -0.31
SHROOM1-208ENST00000617339 ACSM3Q53FZ2 586 aa13.13□□□□□ -0.31
SHROOM1-208ENST00000617339 PRAMEF8Q5VWM4 474 aa13.13□□□□□ -0.31
SHROOM1-208ENST00000617339 PRAMEF7Q5VXH5 474 aa13.13□□□□□ -0.31
SHROOM1-208ENST00000617339 TMUB2Q71RG4 321 aa13.13□□□□□ -0.31
SHROOM1-208ENST00000617339 ADAT1Q9BUB4 502 aaKnown RBP13.13□□□□□ -0.31
SHROOM1-208ENST00000617339 APMAPQ9HDC9 416 aa13.13□□□□□ -0.31
SHROOM1-208ENST00000617339 TRIM36Q9NQ86 728 aa13.13□□□□□ -0.31
SHROOM1-208ENST00000617339 H7C2Y5 167 aa13.13□□□□□ -0.31
SHROOM1-208ENST00000617339 SCRG1O75711 98 aa13.13□□□□□ -0.31
SHROOM1-208ENST00000617339 NDUFB2O95178 105 aa13.13□□□□□ -0.31
SHROOM1-208ENST00000617339 LDOC1O95751 146 aaPredicted RBP13.13□□□□□ -0.31
SHROOM1-208ENST00000617339 JMJD7P0C870 316 aa13.13□□□□□ -0.31
SHROOM1-208ENST00000617339 CSF2RBP32927 897 aa13.13□□□□□ -0.31
SHROOM1-208ENST00000617339 MC2RQ01718 297 aa13.13□□□□□ -0.31
SHROOM1-208ENST00000617339 JAZF1Q86VZ6 243 aa13.13□□□□□ -0.31
SHROOM1-208ENST00000617339 ZFP82Q8N141 532 aa13.13□□□□□ -0.31
SHROOM1-208ENST00000617339 SLC38A9Q8NBW4 561 aa13.13□□□□□ -0.31
SHROOM1-208ENST00000617339 UBL7Q96S82 380 aaPredicted RBP13.13□□□□□ -0.31
SHROOM1-208ENST00000617339 G6PC3Q9BUM1 346 aa13.13□□□□□ -0.31
SHROOM1-208ENST00000617339 NOX3Q9HBY0 568 aa13.13□□□□□ -0.31
SHROOM1-208ENST00000617339 DCTN6O00399 190 aa13.12□□□□□ -0.31
SHROOM1-208ENST00000617339 MT-ND5P03915 603 aa13.12□□□□□ -0.31
SHROOM1-208ENST00000617339 PSMB1P20618 241 aaKnown RBP13.12□□□□□ -0.31
SHROOM1-208ENST00000617339 S100A11P31949 105 aa13.12□□□□□ -0.31
SHROOM1-208ENST00000617339 OTX2P32243 289 aa13.12□□□□□ -0.31
SHROOM1-208ENST00000617339 GDI2P50395 445 aaKnown RBP13.12□□□□□ -0.31
SHROOM1-208ENST00000617339 LNX2Q8N448 690 aa13.12□□□□□ -0.31
SHROOM1-208ENST00000617339 TMEM156Q8N614 296 aa13.12□□□□□ -0.31
SHROOM1-208ENST00000617339 OR6N2Q8NGY6 317 aa13.12□□□□□ -0.31
SHROOM1-208ENST00000617339 OR52I2Q8NH67 350 aa13.12□□□□□ -0.31
SHROOM1-208ENST00000617339 LGALS14Q8TCE9 139 aa13.12□□□□□ -0.31
SHROOM1-208ENST00000617339 SYT4Q9H2B2 425 aa13.12□□□□□ -0.31
SHROOM1-208ENST00000617339 TMEM138Q9NPI0 162 aa13.12□□□□□ -0.31
SHROOM1-208ENST00000617339 CMC2Q9NRP2 79 aa13.12□□□□□ -0.31
SHROOM1-208ENST00000617339 TAS2R3Q9NYW6 316 aa13.12□□□□□ -0.31
SHROOM1-208ENST00000617339 A0A1W2PR77 199 aa13.12□□□□□ -0.31
SHROOM1-208ENST00000617339 A8MXK9 166 aa13.12□□□□□ -0.31
SHROOM1-208ENST00000617339 SIGLEC6O43699 453 aa13.12□□□□□ -0.31
SHROOM1-208ENST00000617339 ALOX12BO75342 701 aa13.12□□□□□ -0.31
SHROOM1-208ENST00000617339 PTP4A3O75365 173 aa13.12□□□□□ -0.31
SHROOM1-208ENST00000617339 ATG12O94817 140 aa13.12□□□□□ -0.31
SHROOM1-208ENST00000617339 TIAF1O95411 115 aa13.12□□□□□ -0.31
SHROOM1-208ENST00000617339 EFNB1P98172 346 aa13.12□□□□□ -0.31
SHROOM1-208ENST00000617339 INPP5JQ15735 1006 aaPredicted RBP13.12□□□□□ -0.31
SHROOM1-208ENST00000617339 LRRN1Q6UXK5 716 aa13.12□□□□□ -0.31
SHROOM1-208ENST00000617339 LRRC69Q6ZNQ3 347 aa13.12□□□□□ -0.31
SHROOM1-208ENST00000617339 ZNF550Q7Z398 422 aa13.12□□□□□ -0.31
SHROOM1-208ENST00000617339 FGF11Q92914 225 aa13.12□□□□□ -0.31
SHROOM1-208ENST00000617339 ADAD1Q96M93 576 aaKnown RBP13.12□□□□□ -0.31
SHROOM1-208ENST00000617339 DERL3Q96Q80 235 aa13.12□□□□□ -0.31
SHROOM1-208ENST00000617339 TSPAN10Q9H1Z9 355 aaPredicted RBP13.12□□□□□ -0.31
SHROOM1-208ENST00000617339 HRASLSQ9HDD0 168 aa13.12□□□□□ -0.31
SHROOM1-208ENST00000617339 ROS1P08922 2347 aa13.12□□□□□ -0.31
SHROOM1-208ENST00000617339 PLSCR5A0PG75 271 aa13.12□□□□□ -0.31
SHROOM1-208ENST00000617339 SLC22A31A6NKX4 558 aa13.12□□□□□ -0.31
SHROOM1-208ENST00000617339 UBL3O95164 117 aa13.12□□□□□ -0.31
SHROOM1-208ENST00000617339 CCKBRP32239 447 aa13.12□□□□□ -0.31
SHROOM1-208ENST00000617339 GK2Q14410 553 aaPredicted RBP13.12□□□□□ -0.31
SHROOM1-208ENST00000617339 SCARB1Q8WTV0 552 aa13.12□□□□□ -0.31
SHROOM1-208ENST00000617339 PPP1R14AQ96A00 147 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms