RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 PRRC2AP48634 2157 aaKnown RBP16.85■□□□□ 0.29
UPF1-212ENST00000601689 E7EQL1 145 aa16.85■□□□□ 0.29
UPF1-212ENST00000601689 ATP6V1G2-DDX39BF2Z307 99 aa16.85■□□□□ 0.29
UPF1-212ENST00000601689 GNGT2O14610 69 aa16.85■□□□□ 0.29
UPF1-212ENST00000601689 DANCRP0C864 163 aa16.85■□□□□ 0.29
UPF1-212ENST00000601689 FUT4P22083 530 aa16.85■□□□□ 0.29
UPF1-212ENST00000601689 ATP5J2P56134 94 aa16.85■□□□□ 0.29
UPF1-212ENST00000601689 ERVK-25P63136 954 aa16.85■□□□□ 0.29
UPF1-212ENST00000601689 MS4A2Q01362 244 aa16.85■□□□□ 0.29
UPF1-212ENST00000601689 GALK2Q01415 458 aa16.85■□□□□ 0.29
UPF1-212ENST00000601689 SPOCK1Q08629 439 aa16.85■□□□□ 0.29
UPF1-212ENST00000601689 GK3PQ14409 553 aa16.85■□□□□ 0.29
UPF1-212ENST00000601689 C10orf128Q5T292 105 aa16.85■□□□□ 0.29
UPF1-212ENST00000601689 RPL13AP3Q6NVV1 102 aa16.85■□□□□ 0.29
UPF1-212ENST00000601689 SMARCD3Q6STE5 483 aa16.85■□□□□ 0.29
UPF1-212ENST00000601689 DPY19L2P2Q6ZN68 376 aa16.85■□□□□ 0.29
UPF1-212ENST00000601689 LRRC75AQ8NAA5 344 aa16.85■□□□□ 0.29
UPF1-212ENST00000601689 NSMAFQ92636 917 aa16.85■□□□□ 0.29
UPF1-212ENST00000601689 HDAC2Q92769 488 aaKnown RBP16.85■□□□□ 0.29
UPF1-212ENST00000601689 CLPTM1LQ96KA5 538 aa16.85■□□□□ 0.29
UPF1-212ENST00000601689 TSPAN32Q96QS1 320 aa16.85■□□□□ 0.29
UPF1-212ENST00000601689 KCNK17Q96T54 332 aa16.85■□□□□ 0.29
UPF1-212ENST00000601689 CCNB1IP1Q9NPC3 277 aa16.85■□□□□ 0.29
UPF1-212ENST00000601689 SIGLEC7Q9Y286 467 aa16.85■□□□□ 0.29
UPF1-212ENST00000601689 IQCMA0A1B0GVH7 501 aa16.84■□□□□ 0.29
UPF1-212ENST00000601689 NOS3P29474 1203 aa16.84■□□□□ 0.29
UPF1-212ENST00000601689 SDHAP31040 664 aa16.84■□□□□ 0.29
UPF1-212ENST00000601689 SLC6A6P31641 620 aa16.84■□□□□ 0.29
UPF1-212ENST00000601689 MAGEA2P43356 314 aa16.84■□□□□ 0.29
UPF1-212ENST00000601689 LIMS1P48059 325 aa16.84■□□□□ 0.29
UPF1-212ENST00000601689 PTH2RP49190 550 aa16.84■□□□□ 0.29
UPF1-212ENST00000601689 ZNF133P52736 654 aaPredicted RBP16.84■□□□□ 0.29
UPF1-212ENST00000601689 HMGA2P52926 109 aa16.84■□□□□ 0.29
UPF1-212ENST00000601689 RUNX1T1Q06455 604 aa16.84■□□□□ 0.29
UPF1-212ENST00000601689 BNIP1Q12981 228 aa16.84■□□□□ 0.29
UPF1-212ENST00000601689 FLOT2Q14254 428 aa16.84■□□□□ 0.29
UPF1-212ENST00000601689 SEC23BQ15437 767 aa16.84■□□□□ 0.29
UPF1-212ENST00000601689 ETFDHQ16134 617 aa16.84■□□□□ 0.29
UPF1-212ENST00000601689 IQCCQ4KMZ1 466 aa16.84■□□□□ 0.29
UPF1-212ENST00000601689 TGIF2LYQ8IUE0 185 aa16.84■□□□□ 0.29
UPF1-212ENST00000601689 OR52L1Q8NGH7 329 aa16.84■□□□□ 0.29
UPF1-212ENST00000601689 OR1J2Q8NGS2 313 aa16.84■□□□□ 0.29
UPF1-212ENST00000601689 FANK1Q8TC84 345 aa16.84■□□□□ 0.29
UPF1-212ENST00000601689 SEC61A2Q9H9S3 476 aa16.84■□□□□ 0.29
UPF1-212ENST00000601689 SIAEQ9HAT2 523 aa16.84■□□□□ 0.29
UPF1-212ENST00000601689 BARX1Q9HBU1 254 aaPredicted RBP16.84■□□□□ 0.29
UPF1-212ENST00000601689 TCRBV5S2A0A599 114 aa16.83■□□□□ 0.28
UPF1-212ENST00000601689 PTP4A3O75365 173 aa16.83■□□□□ 0.28
UPF1-212ENST00000601689 CCNB2O95067 398 aa16.83■□□□□ 0.28
UPF1-212ENST00000601689 SOD3P08294 240 aa16.83■□□□□ 0.28
UPF1-212ENST00000601689 PAX1P15863 534 aa16.83■□□□□ 0.28
UPF1-212ENST00000601689 FPR3P25089 353 aa16.83■□□□□ 0.28
UPF1-212ENST00000601689 GIPRP48546 466 aa16.83■□□□□ 0.28
UPF1-212ENST00000601689 MRPS34P82930 218 aaKnown RBP16.83■□□□□ 0.28
UPF1-212ENST00000601689 SGCAQ16586 387 aa16.83■□□□□ 0.28
UPF1-212ENST00000601689 PGGHGQ32M88 737 aa16.83■□□□□ 0.28
UPF1-212ENST00000601689 Q5PR19 223 aa16.83■□□□□ 0.28
UPF1-212ENST00000601689 OR2T5Q6IEZ7 315 aa16.83■□□□□ 0.28
UPF1-212ENST00000601689 C1orf94Q6P1W5 598 aa16.83■□□□□ 0.28
UPF1-212ENST00000601689 ADCK1Q86TW2 530 aa16.83■□□□□ 0.28
UPF1-212ENST00000601689 DTX2Q86UW9 622 aa16.83■□□□□ 0.28
UPF1-212ENST00000601689 SPATA24Q86W54 205 aa16.83■□□□□ 0.28
UPF1-212ENST00000601689 LURAP1LQ8IV03 231 aa16.83■□□□□ 0.28
UPF1-212ENST00000601689 WDFY1Q8IWB7 410 aa16.83■□□□□ 0.28
UPF1-212ENST00000601689 SKA3Q8IX90 412 aa16.83■□□□□ 0.28
UPF1-212ENST00000601689 OR2T29Q8NH02 315 aa16.83■□□□□ 0.28
UPF1-212ENST00000601689 ZNF519Q8TB69 540 aa16.83■□□□□ 0.28
UPF1-212ENST00000601689 GPX7Q96SL4 187 aaPredicted RBP16.83■□□□□ 0.28
UPF1-212ENST00000601689 TRAF4Q9BUZ4 470 aaPredicted RBP16.83■□□□□ 0.28
UPF1-212ENST00000601689 MMADHCQ9H3L0 296 aaPredicted RBP16.83■□□□□ 0.28
UPF1-212ENST00000601689 ZNF701Q9NV72 531 aaPredicted RBP16.83■□□□□ 0.28
UPF1-212ENST00000601689 B3GNT2Q9NY97 397 aa16.83■□□□□ 0.28
UPF1-212ENST00000601689 SAMHD1Q9Y3Z3 626 aaKnown RBP16.83■□□□□ 0.28
UPF1-212ENST00000601689 PLCE1Q9P212 2302 aa16.82■□□□□ 0.28
UPF1-212ENST00000601689 DHRS12A0PJE2 317 aa16.82■□□□□ 0.28
UPF1-212ENST00000601689 SLC22A23A1A5C7 686 aa16.82■□□□□ 0.28
UPF1-212ENST00000601689 SLC2A10O95528 541 aa16.82■□□□□ 0.28
UPF1-212ENST00000601689 CST1P01037 141 aa16.82■□□□□ 0.28
UPF1-212ENST00000601689 SERPINA5P05154 406 aa16.82■□□□□ 0.28
UPF1-212ENST00000601689 APEHP13798 732 aaKnown RBP16.82■□□□□ 0.28
UPF1-212ENST00000601689 CD99P14209 185 aa16.82■□□□□ 0.28
UPF1-212ENST00000601689 PCBD1P61457 104 aa16.82■□□□□ 0.28
UPF1-212ENST00000601689 SNRPD2P62316 118 aaKnown RBP16.82■□□□□ 0.28
UPF1-212ENST00000601689 ADAM8P78325 824 aa16.82■□□□□ 0.28
UPF1-212ENST00000601689 HSF2Q03933 536 aa16.82■□□□□ 0.28
UPF1-212ENST00000601689 TSPAN31Q12999 210 aa16.82■□□□□ 0.28
UPF1-212ENST00000601689 KRR1Q13601 381 aaKnown RBP16.82■□□□□ 0.28
UPF1-212ENST00000601689 RFX4Q33E94 735 aa16.82■□□□□ 0.28
UPF1-212ENST00000601689 DNM1P34Q6PK57 102 aa16.82■□□□□ 0.28
UPF1-212ENST00000601689 VHLLQ6RSH7 139 aa16.82■□□□□ 0.28
UPF1-212ENST00000601689 UNQ6126/PRO20091Q6UXV3 157 aa16.82■□□□□ 0.28
UPF1-212ENST00000601689 YTHDF3Q7Z739 585 aaKnown RBP16.82■□□□□ 0.28
UPF1-212ENST00000601689 ZER1Q7Z7L7 766 aa16.82■□□□□ 0.28
UPF1-212ENST00000601689 JAZF1Q86VZ6 243 aa16.82■□□□□ 0.28
UPF1-212ENST00000601689 ALDH16A1Q8IZ83 802 aa16.82■□□□□ 0.28
UPF1-212ENST00000601689 LRRC18Q8N456 261 aa16.82■□□□□ 0.28
UPF1-212ENST00000601689 NUP37Q8NFH4 326 aa16.82■□□□□ 0.28
UPF1-212ENST00000601689 SLC7A6OSQ96CW6 309 aaPredicted RBP16.82■□□□□ 0.28
UPF1-212ENST00000601689 Q96M85 177 aa16.82■□□□□ 0.28
UPF1-212ENST00000601689 SH3GL3Q99963 347 aa16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms