RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 OR51B6Q9H340 312 aa8.42□□□□□ -1.06
VRK3-216ENST00000599342 MEPEQ9NQ76 525 aaPredicted RBP8.42□□□□□ -1.06
VRK3-216ENST00000599342 INIPQ9NRY2 104 aa8.42□□□□□ -1.06
VRK3-216ENST00000599342 MYEF2Q9P2K5 600 aaKnown RBP8.42□□□□□ -1.06
VRK3-216ENST00000599342 TMEFF2Q9UIK5 374 aaPredicted RBP8.42□□□□□ -1.06
VRK3-216ENST00000599342 MED31Q9Y3C7 131 aa8.42□□□□□ -1.06
VRK3-216ENST00000599342 B4DSR2 109 aa8.41□□□□□ -1.06
VRK3-216ENST00000599342 MGRN1O60291 552 aa8.41□□□□□ -1.06
VRK3-216ENST00000599342 SHOX2O60902 331 aaPredicted RBP8.41□□□□□ -1.06
VRK3-216ENST00000599342 SNAP29O95721 258 aa8.41□□□□□ -1.06
VRK3-216ENST00000599342 IGF2P01344 180 aa8.41□□□□□ -1.06
VRK3-216ENST00000599342 HPXP02790 462 aa8.41□□□□□ -1.06
VRK3-216ENST00000599342 LCKP06239 509 aa8.41□□□□□ -1.06
VRK3-216ENST00000599342 SAGP10523 405 aaPredicted RBP8.41□□□□□ -1.06
VRK3-216ENST00000599342 THRBP10828 461 aa8.41□□□□□ -1.06
VRK3-216ENST00000599342 NAT2P11245 290 aa8.41□□□□□ -1.06
VRK3-216ENST00000599342 CCL2P13500 99 aa8.41□□□□□ -1.06
VRK3-216ENST00000599342 ACADSP16219 412 aa8.41□□□□□ -1.06
VRK3-216ENST00000599342 TNFRSF1BP20333 461 aa8.41□□□□□ -1.06
VRK3-216ENST00000599342 APLNRP35414 380 aa8.41□□□□□ -1.06
VRK3-216ENST00000599342 AQP2P41181 271 aa8.41□□□□□ -1.06
VRK3-216ENST00000599342 RAD52P43351 418 aa8.41□□□□□ -1.06
VRK3-216ENST00000599342 OR1E2P47887 323 aa8.41□□□□□ -1.06
VRK3-216ENST00000599342 ARFIP2P53365 341 aa8.41□□□□□ -1.06
VRK3-216ENST00000599342 CRYBA2P53672 197 aa8.41□□□□□ -1.06
VRK3-216ENST00000599342 UGT2B15P54855 530 aa8.41□□□□□ -1.06
VRK3-216ENST00000599342 CDH15P55291 814 aa8.41□□□□□ -1.06
VRK3-216ENST00000599342 KLF3P57682 345 aaPredicted RBP8.41□□□□□ -1.06
VRK3-216ENST00000599342 HSF2Q03933 536 aa8.41□□□□□ -1.06
VRK3-216ENST00000599342 ALKBH6Q3KRA9 238 aa8.41□□□□□ -1.06
VRK3-216ENST00000599342 ELFN2Q5R3F8 820 aa8.41□□□□□ -1.06
VRK3-216ENST00000599342 LIPNQ5VXI9 398 aa8.41□□□□□ -1.06
VRK3-216ENST00000599342 GLCCI1Q86VQ1 547 aa8.41□□□□□ -1.06
VRK3-216ENST00000599342 CALHM3Q86XJ0 350 aa8.41□□□□□ -1.06
VRK3-216ENST00000599342 NKAIN4Q8IVV8 208 aa8.41□□□□□ -1.06
VRK3-216ENST00000599342 LRRC18Q8N456 261 aa8.41□□□□□ -1.06
VRK3-216ENST00000599342 SYT14Q8NB59 555 aa8.41□□□□□ -1.06
VRK3-216ENST00000599342 ICA1LQ8NDH6 482 aa8.41□□□□□ -1.06
VRK3-216ENST00000599342 C11orf40Q8WZ69 217 aa8.41□□□□□ -1.06
VRK3-216ENST00000599342 TPD52L3Q96J77 140 aa8.41□□□□□ -1.06
VRK3-216ENST00000599342 C19orf24Q9BVV8 132 aa8.41□□□□□ -1.06
VRK3-216ENST00000599342 ZNF416Q9BWM5 594 aa8.41□□□□□ -1.06
VRK3-216ENST00000599342 BCL2L14Q9BZR8 327 aa8.41□□□□□ -1.06
VRK3-216ENST00000599342 NARFLQ9H6Q4 476 aa8.41□□□□□ -1.06
VRK3-216ENST00000599342 CCNB1IP1Q9NPC3 277 aa8.41□□□□□ -1.06
VRK3-216ENST00000599342 GID8Q9NWU2 228 aa8.41□□□□□ -1.06
VRK3-216ENST00000599342 TAAR3PQ9P1P4 343 aa8.41□□□□□ -1.06
VRK3-216ENST00000599342 RIMS3Q9UJD0 308 aa8.41□□□□□ -1.06
VRK3-216ENST00000599342 RTTNQ86VV8 2226 aa8.41□□□□□ -1.06
VRK3-216ENST00000599342 GMNCA6NCL1 334 aa8.4□□□□□ -1.06
VRK3-216ENST00000599342 FAM220BPB1ANY3 271 aa8.4□□□□□ -1.06
VRK3-216ENST00000599342 FXYD1O00168 92 aa8.4□□□□□ -1.06
VRK3-216ENST00000599342 PPIHO43447 177 aaKnown RBP8.4□□□□□ -1.06
VRK3-216ENST00000599342 TRMUO75648 421 aaKnown RBP8.4□□□□□ -1.06
VRK3-216ENST00000599342 TFP02787 698 aa8.4□□□□□ -1.06
VRK3-216ENST00000599342 MT-ND5P03915 603 aa8.4□□□□□ -1.06
VRK3-216ENST00000599342 H2AFXP16104 143 aaPredicted RBP8.4□□□□□ -1.06
VRK3-216ENST00000599342 DRD4P21917 467 aa8.4□□□□□ -1.06
VRK3-216ENST00000599342 CCNOP22674 350 aa8.4□□□□□ -1.06
VRK3-216ENST00000599342 DVL1P1P54792 670 aaPredicted RBP8.4□□□□□ -1.06
VRK3-216ENST00000599342 TMEM33P57088 247 aa8.4□□□□□ -1.06
VRK3-216ENST00000599342 MRPS11P82912 194 aaKnown RBP8.4□□□□□ -1.06
VRK3-216ENST00000599342 RUNX1T1Q06455 604 aa8.4□□□□□ -1.06
VRK3-216ENST00000599342 CD47Q08722 323 aa8.4□□□□□ -1.06
VRK3-216ENST00000599342 ST3GAL3Q11203 375 aa8.4□□□□□ -1.06
VRK3-216ENST00000599342 SF3A3Q12874 501 aaKnown RBP eCLIP8.4□□□□□ -1.06
VRK3-216ENST00000599342 KLF10Q13118 480 aa8.4□□□□□ -1.06
VRK3-216ENST00000599342 TOP3AQ13472 1001 aaPredicted RBP8.4□□□□□ -1.06
VRK3-216ENST00000599342 PIN1Q13526 163 aaPredicted RBP8.4□□□□□ -1.06
VRK3-216ENST00000599342 MOGQ16653 247 aa8.4□□□□□ -1.06
VRK3-216ENST00000599342 HIST3H3Q16695 136 aa8.4□□□□□ -1.06
VRK3-216ENST00000599342 PCGF3Q3KNV8 242 aa8.4□□□□□ -1.06
VRK3-216ENST00000599342 CYBRD1Q53TN4 286 aa8.4□□□□□ -1.06
VRK3-216ENST00000599342 ALG10Q5BKT4 473 aa8.4□□□□□ -1.06
VRK3-216ENST00000599342 TMEM154Q6P9G4 183 aa8.4□□□□□ -1.06
VRK3-216ENST00000599342 RINLQ6ZS11 566 aa8.4□□□□□ -1.06
VRK3-216ENST00000599342 PAQR4Q8N4S7 273 aaPredicted RBP8.4□□□□□ -1.06
VRK3-216ENST00000599342 OR2T12Q8NG77 320 aa8.4□□□□□ -1.06
VRK3-216ENST00000599342 ZNF519Q8TB69 540 aa8.4□□□□□ -1.06
VRK3-216ENST00000599342 SYNPRQ8TBG9 265 aa8.4□□□□□ -1.06
VRK3-216ENST00000599342 C10orf82Q8WW14 230 aa8.4□□□□□ -1.06
VRK3-216ENST00000599342 LZICQ8WZA0 190 aa8.4□□□□□ -1.06
VRK3-216ENST00000599342 SEPHS2Q99611 448 aa8.4□□□□□ -1.06
VRK3-216ENST00000599342 MRPL13Q9BYD1 178 aaKnown RBP8.4□□□□□ -1.06
VRK3-216ENST00000599342 ZNF275Q9NSD4 429 aaPredicted RBP8.4□□□□□ -1.06
VRK3-216ENST00000599342 C20orf141Q9NUB4 165 aa8.4□□□□□ -1.06
VRK3-216ENST00000599342 FGFR1OP2Q9NVK5 253 aa8.4□□□□□ -1.06
VRK3-216ENST00000599342 SLCO1C1Q9NYB5 712 aa8.4□□□□□ -1.06
VRK3-216ENST00000599342 LOC100653049A0A140TA62 436 aa8.39□□□□□ -1.07
VRK3-216ENST00000599342 NPIPB13A6NJU9 1138 aa8.39□□□□□ -1.07
VRK3-216ENST00000599342 C17orf100A8MU93 164 aa8.39□□□□□ -1.07
VRK3-216ENST00000599342 NPIPB4C9JG80 1138 aa8.39□□□□□ -1.07
VRK3-216ENST00000599342 TPD52L2O43399 206 aaKnown RBP8.39□□□□□ -1.07
VRK3-216ENST00000599342 TCF21O43680 179 aa8.39□□□□□ -1.07
VRK3-216ENST00000599342 KRT34O76011 436 aa8.39□□□□□ -1.07
VRK3-216ENST00000599342 NCR1O76036 304 aa8.39□□□□□ -1.07
VRK3-216ENST00000599342 SLC2A10O95528 541 aa8.39□□□□□ -1.07
VRK3-216ENST00000599342 CLPTM1O96005 669 aa8.39□□□□□ -1.07
VRK3-216ENST00000599342 ZNF250P15622 560 aa8.39□□□□□ -1.07
VRK3-216ENST00000599342 COL8A2P25067 703 aa8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms