RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 DCTN6O00399 190 aa13.69□□□□□ -0.22
UPF1-206ENST00000598471 ZNHIT1O43257 154 aa13.69□□□□□ -0.22
UPF1-206ENST00000598471 KRT33AO76009 404 aa13.69□□□□□ -0.22
UPF1-206ENST00000598471 CLPTM1O96005 669 aa13.69□□□□□ -0.22
UPF1-206ENST00000598471 MT-ND2P03891 347 aa13.69□□□□□ -0.22
UPF1-206ENST00000598471 STSP08842 583 aa13.69□□□□□ -0.22
UPF1-206ENST00000598471 QDPRP09417 244 aa13.69□□□□□ -0.22
UPF1-206ENST00000598471 SBK2P0C263 348 aa13.69□□□□□ -0.22
UPF1-206ENST00000598471 SMIM18P0DKX4 95 aa13.69□□□□□ -0.22
UPF1-206ENST00000598471 ATP6V1B1P15313 513 aa13.69□□□□□ -0.22
UPF1-206ENST00000598471 AGTR1P30556 359 aa13.69□□□□□ -0.22
UPF1-206ENST00000598471 GUCA1AP43080 201 aaPredicted RBP13.69□□□□□ -0.22
UPF1-206ENST00000598471 ZNF84P51523 738 aa13.69□□□□□ -0.22
UPF1-206ENST00000598471 LINC01590Q5TEZ4 76 aa13.69□□□□□ -0.22
UPF1-206ENST00000598471 SLC25A47Q6Q0C1 308 aa13.69□□□□□ -0.22
UPF1-206ENST00000598471 PLXDC2Q6UX71 529 aa13.69□□□□□ -0.22
UPF1-206ENST00000598471 RPTNQ6XPR3 784 aa13.69□□□□□ -0.22
UPF1-206ENST00000598471 GLB1L2Q8IW92 636 aa13.69□□□□□ -0.22
UPF1-206ENST00000598471 WDFY1Q8IWB7 410 aa13.69□□□□□ -0.22
UPF1-206ENST00000598471 ZNF100Q8IYN0 542 aa13.69□□□□□ -0.22
UPF1-206ENST00000598471 MCHR2Q969V1 340 aa13.69□□□□□ -0.22
UPF1-206ENST00000598471 APH1AQ96BI3 265 aa13.69□□□□□ -0.22
UPF1-206ENST00000598471 NMD3Q96D46 503 aaKnown RBP13.69□□□□□ -0.22
UPF1-206ENST00000598471 ZFP3Q96NJ6 502 aa13.69□□□□□ -0.22
UPF1-206ENST00000598471 MYCBPQ99417 103 aaPredicted RBP13.69□□□□□ -0.22
UPF1-206ENST00000598471 SLCO5A1Q9H2Y9 848 aa13.69□□□□□ -0.22
UPF1-206ENST00000598471 INPP5EQ9NRR6 644 aa13.69□□□□□ -0.22
UPF1-206ENST00000598471 FOXD3Q9UJU5 478 aaPredicted RBP13.69□□□□□ -0.22
UPF1-206ENST00000598471 COA3Q9Y2R0 106 aaPredicted RBP13.69□□□□□ -0.22
UPF1-206ENST00000598471 COMMD3-BMI1R4GMX3 469 aa13.69□□□□□ -0.22
UPF1-206ENST00000598471 MBD3L4A6NDZ8 208 aaPredicted RBP13.68□□□□□ -0.22
UPF1-206ENST00000598471 MBD3L3A6NE82 208 aaPredicted RBP13.68□□□□□ -0.22
UPF1-206ENST00000598471 MBD3L5A6NJ08 208 aaPredicted RBP13.68□□□□□ -0.22
UPF1-206ENST00000598471 APOL3O95236 402 aa13.68□□□□□ -0.22
UPF1-206ENST00000598471 MRPL3P09001 348 aaKnown RBP13.68□□□□□ -0.22
UPF1-206ENST00000598471 ZNF133P52736 654 aaPredicted RBP13.68□□□□□ -0.22
UPF1-206ENST00000598471 PER3P56645 1201 aa13.68□□□□□ -0.22
UPF1-206ENST00000598471 MVKQ03426 396 aa13.68□□□□□ -0.22
UPF1-206ENST00000598471 PIGFQ07326 219 aa13.68□□□□□ -0.22
UPF1-206ENST00000598471 C10orf128Q5T292 105 aa13.68□□□□□ -0.22
UPF1-206ENST00000598471 RIPPLY2Q5TAB7 128 aa13.68□□□□□ -0.22
UPF1-206ENST00000598471 B3GLCTQ6Y288 498 aa13.68□□□□□ -0.22
UPF1-206ENST00000598471 B3GNT6Q6ZMB0 384 aa13.68□□□□□ -0.22
UPF1-206ENST00000598471 SHFQ7M4L6 423 aa13.68□□□□□ -0.22
UPF1-206ENST00000598471 ERI1Q8IV48 349 aaKnown RBP13.68□□□□□ -0.22
UPF1-206ENST00000598471 ACBD7Q8N6N7 88 aa13.68□□□□□ -0.22
UPF1-206ENST00000598471 OR10H5Q8NGA6 315 aa13.68□□□□□ -0.22
UPF1-206ENST00000598471 OR4F15Q8NGB8 312 aa13.68□□□□□ -0.22
UPF1-206ENST00000598471 MBD3L2Q8NHZ7 208 aaPredicted RBP13.68□□□□□ -0.22
UPF1-206ENST00000598471 SGCDQ92629 289 aa13.68□□□□□ -0.22
UPF1-206ENST00000598471 NSMAFQ92636 917 aa13.68□□□□□ -0.22
UPF1-206ENST00000598471 MRPL48Q96GC5 212 aaKnown RBP13.68□□□□□ -0.22
UPF1-206ENST00000598471 INTS14Q96SY0 518 aa13.68□□□□□ -0.22
UPF1-206ENST00000598471 MNTQ99583 582 aa13.68□□□□□ -0.22
UPF1-206ENST00000598471 CDCA4Q9BXL8 241 aa13.68□□□□□ -0.22
UPF1-206ENST00000598471 LINC00470Q9BZP3 86 aa13.68□□□□□ -0.22
UPF1-206ENST00000598471 ADGRL4Q9HBW9 690 aa13.68□□□□□ -0.22
UPF1-206ENST00000598471 ERGIC3Q9Y282 383 aa13.68□□□□□ -0.22
UPF1-206ENST00000598471 A0A1W2PPL8 197 aa13.67□□□□□ -0.22
UPF1-206ENST00000598471 MYL12BO14950 172 aa13.67□□□□□ -0.22
UPF1-206ENST00000598471 DHHO43323 396 aa13.67□□□□□ -0.22
UPF1-206ENST00000598471 SLC19A2O60779 497 aa13.67□□□□□ -0.22
UPF1-206ENST00000598471 C1QL1O75973 258 aa13.67□□□□□ -0.22
UPF1-206ENST00000598471 IGHA1P01876 353 aa13.67□□□□□ -0.22
UPF1-206ENST00000598471 HRGP04196 525 aa13.67□□□□□ -0.22
UPF1-206ENST00000598471 CRHP06850 196 aa13.67□□□□□ -0.22
UPF1-206ENST00000598471 HTR1AP08908 422 aa13.67□□□□□ -0.22
UPF1-206ENST00000598471 OR2T7P0C7T2 308 aa13.67□□□□□ -0.22
UPF1-206ENST00000598471 ZNF823P16415 610 aa13.67□□□□□ -0.22
UPF1-206ENST00000598471 LAP3P28838 519 aa13.67□□□□□ -0.22
UPF1-206ENST00000598471 NAA10P41227 235 aaPredicted RBP13.67□□□□□ -0.22
UPF1-206ENST00000598471 CASP6P55212 293 aa13.67□□□□□ -0.22
UPF1-206ENST00000598471 NFATC3Q12968 1075 aa13.67□□□□□ -0.22
UPF1-206ENST00000598471 TBCEQ15813 527 aaPredicted RBP13.67□□□□□ -0.22
UPF1-206ENST00000598471 RNLSQ5VYX0 342 aa13.67□□□□□ -0.22
UPF1-206ENST00000598471 FAM214BQ7L5A3 538 aa13.67□□□□□ -0.22
UPF1-206ENST00000598471 SLC16A9Q7RTY1 509 aa13.67□□□□□ -0.22
UPF1-206ENST00000598471 ABHD12BQ7Z5M8 362 aaPredicted RBP13.67□□□□□ -0.22
UPF1-206ENST00000598471 SLC35F2Q8IXU6 374 aa13.67□□□□□ -0.22
UPF1-206ENST00000598471 SPARTQ8N0X7 666 aa13.67□□□□□ -0.22
UPF1-206ENST00000598471 C9orf106Q8NAJ2 232 aa13.67□□□□□ -0.22
UPF1-206ENST00000598471 ZNF511Q8NB15 262 aa13.67□□□□□ -0.22
UPF1-206ENST00000598471 OR10H4Q8NGA5 316 aa13.67□□□□□ -0.22
UPF1-206ENST00000598471 OR2T27Q8NH04 317 aa13.67□□□□□ -0.22
UPF1-206ENST00000598471 CPT1CQ8TCG5 803 aa13.67□□□□□ -0.22
UPF1-206ENST00000598471 ZNRF4Q8WWF5 429 aa13.67□□□□□ -0.22
UPF1-206ENST00000598471 FCGR1BQ92637 280 aa13.67□□□□□ -0.22
UPF1-206ENST00000598471 SIGLEC11Q96RL6 698 aa13.67□□□□□ -0.22
UPF1-206ENST00000598471 JAM3Q9BX67 310 aa13.67□□□□□ -0.22
UPF1-206ENST00000598471 YIPF3Q9GZM5 350 aa13.67□□□□□ -0.22
UPF1-206ENST00000598471 MARCH7Q9H992 704 aa13.67□□□□□ -0.22
UPF1-206ENST00000598471 UPB1Q9UBR1 384 aa13.67□□□□□ -0.22
UPF1-206ENST00000598471 ZNF835Q9Y2P0 537 aa13.67□□□□□ -0.22
UPF1-206ENST00000598471 TMEM14AQ9Y6G1 99 aa13.67□□□□□ -0.22
UPF1-206ENST00000598471 NBEAQ8NFP9 2946 aa13.67□□□□□ -0.22
UPF1-206ENST00000598471 PIEZO2Q9H5I5 2752 aa13.66□□□□□ -0.22
UPF1-206ENST00000598471 DAPL1A0PJW8 107 aa13.66□□□□□ -0.22
UPF1-206ENST00000598471 TVP23AA6NH52 213 aa13.66□□□□□ -0.22
UPF1-206ENST00000598471 TRIM64CA6NLI5 447 aa13.66□□□□□ -0.22
UPF1-206ENST00000598471 C12orf71A8MTZ7 269 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms